Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005938

Physical Location & Seq

Genomic Coordinates Reverse (-)

66745077 .. 66746367

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG453200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCAGATGGACCTTGGGCTCTTCGACGACGGCGGAGATGAGATCAGAGAGGAGATCGAAGCAGAGGAGAGGCTCCGTCGTCCTCCTAATCTGGCCCTCTCCTGCACTGGGCTCATCTCACCGCCACCACTTTCCTCTCTCTCCACAGAGCCTTCCCGCCGACCCACCACCGAGTCCAACTCGATCGCCGCCGCAGCCCATGTCCTCCACCGGCCTCCAAGAGGACATGGGCGACAGTGCCATCTTTTTGCAATGAATAAACACATGGAGCTATATGTGAACAAGATAATGAAGATGATGAAGGATGAAAAGCTATTTGCTCCACAAGGAGGTCCAATCATCTTAGCTCAGATTGAAAATGAGTACAATCAAATCGAACTTGCATATAGAGAGTTGGGAGATACATATGTGCAGTGGGCAGCAAAGCTGGCAGTTGGGCAGAATATTGGAGTGCCATGGATCATATGCAAGAAAACTTTGCTTACTGGAACTCCCGGAGACCAAAGGTTGGGGGAAGAAACTGAGGTTCGTTTCTATGAGAAACCAGGGACAGAGTGTGCTGCTTTCATAGCAAATAATCACTCGACCATGGAAGCAACCGTTAATTGGAGGGGACAGAAGTTTCTCCTGCCACCAGCTTCCATTAGCATCCTCCCCGACTGCAAGACTGGTCTTCAATACTCAACAAATGGACGAATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

234

Amino Acids

26.12

Weight (kDa)

5.91

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	87 - 159	1.9e-14	Glycosyl hydrolases family 35
GHD	PF17834	176 - 223	1.1e-15	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005938)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476191 RchiOBHm_Chr3g0476351 RchiOBHm_Chr5g0027921 RchiOBHm_Chr7g0210761
rosa_laevigata	RLG00000019861
rosa_multiflora	Rmu_sc0002839.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327550
rosa_rugosa	Rorug06G0398600
rosa_samantha	Rh2AG300200 Rh2AG453200 Rh2CG440200 Rh2CG440300 Rh2DG035200 Rh2DG264500 Rh2DG324300 Rh2DG324400 Rh3BG235000 Rh3BG236300 Rh4CG433300 Rh5AG185900 Rh5AG186000 Rh5BG450000 Rh5DG196500 Rh5DG392800 Rh5DG463400 Rh6AG053200 Rh6AG515900 Rh6CG384500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	508
AciI	CCGC	5 cut(s)	33, 122, 157, 189, 192
AclWI	GGATC	1 cut(s)	467
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	5 cut(s)	108, 221, 329, 508, 606
AgsI	TTSAA	2 cut(s)	356, 677
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	5 cut(s)	271, 313, 347, 427, 638
AluI	AGCT	5 cut(s)	271, 313, 347, 427, 638
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	2 cut(s)	93, 212
ApeKI	GCWGC	3 cut(s)	194, 419, 560
AspS9I	GGNCC	3 cut(s)	10, 94, 332
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	10, 332
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BanII	GRGCYC	2 cut(s)	21, 114
BbsI	GAAGAC	1 cut(s)	665
BbvI	GCAGC	3 cut(s)	206, 431, 547
BccI	CCATC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	492
BisI	GCNGC	5 cut(s)	189, 192, 195, 420, 561
BlsI	GCNGC	5 cut(s)	190, 193, 196, 421, 562
Bme1390I	CCNGG	2 cut(s)	495, 546
Bme18I	GGWCC	2 cut(s)	10, 332
BmgT120I	GGNCC	3 cut(s)	10, 94, 332
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	495, 546
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	657
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuMI	CCSGG	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	13, 455, 545, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 221, 329, 508, 606
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	3 cut(s)	112, 490, 673
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	13, 455, 545, 588
BseGI	GGATG	2 cut(s)	310, 648
BseLI	CCNNNNNNNGG	5 cut(s)	108, 221, 329, 508, 606
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	2 cut(s)	362, 513
BseNI	ACTGG	3 cut(s)	112, 490, 673
BseRI	GAGGAG	2 cut(s)	65, 80
BseXI	GCAGC	3 cut(s)	206, 431, 547
BsgI	GTGCAG	2 cut(s)	88, 431
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	95, 214
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	211, 495
BslFI	GGGAC	2 cut(s)	562, 627
BslI	CCNNNNNNNGG	5 cut(s)	108, 221, 329, 508, 606
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	2 cut(s)	562, 627
BsnI	GGCC	2 cut(s)	95, 214
Bso31I	GGTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	2 cut(s)	21, 114
Bsp143I	GATC	4 cut(s)	42, 54, 183, 459
Bsp19I	CCATGG	2 cut(s)	455, 588
BspACI	CCGC	5 cut(s)	33, 122, 157, 189, 192
BspANI	GGCC	2 cut(s)	95, 214
BspCNI	CTCAG	2 cut(s)	361, 514
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	112, 490, 673
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	4 cut(s)	13, 455, 545, 588
BssMI	GATC	4 cut(s)	42, 54, 183, 459
BssT1I	CCWWGG	3 cut(s)	13, 455, 588
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	237, 601
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	343, 348, 522
BstDSI	CCRYGG	2 cut(s)	455, 588
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	310, 648
BstKTI	GATC	4 cut(s)	45, 57, 186, 462
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	4 cut(s)	42, 54, 183, 459
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 428, 569
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	493, 544
BstV1I	GCAGC	3 cut(s)	206, 431, 547
BstV2I	GAAGAC	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	95, 214
BtgI	CCRYGG	2 cut(s)	455, 588
BtsCI	GGATG	2 cut(s)	310, 648
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	3 cut(s)	105, 242, 419
Cac8I	GCNNGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	10, 94, 332
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	5 cut(s)	200, 227, 265, 456, 589
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	3 cut(s)	343, 348, 522
DpnI	GATC	4 cut(s)	44, 56, 185, 461
DpnII	GATC	4 cut(s)	42, 54, 183, 459
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	13, 455, 588
Eco24I	GRGCYC	2 cut(s)	21, 114
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	10, 332
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	3 cut(s)	13, 455, 588
EcoT38I	GRGCYC	2 cut(s)	21, 114
ErhI	CCWWGG	3 cut(s)	13, 455, 588
FaeI	CATG	5 cut(s)	203, 230, 268, 459, 592
FaqI	GGGAC	2 cut(s)	562, 627
FatI	CATG	5 cut(s)	199, 226, 264, 455, 588
FauI	CCCGC	1 cut(s)	164
FauNDI	CATATG	2 cut(s)	406, 464
Fnu4HI	GCNGC	5 cut(s)	189, 192, 195, 420, 561
FokI	GGATG	2 cut(s)	317, 635
FriOI	GRGCYC	2 cut(s)	21, 114
Fsp4HI	GCNGC	5 cut(s)	189, 192, 195, 420, 561
GluI	GCNGC	5 cut(s)	189, 192, 195, 420, 561
HaeIII	GGCC	2 cut(s)	95, 214
HapII	CCGG	2 cut(s)	211, 495
Hin1II	CATG	5 cut(s)	203, 230, 268, 459, 592
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	211, 495
HphI	GGTGA	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	47, 351
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	3 cut(s)	29, 32, 81
HpyAV	CCTTC	2 cut(s)	162, 295
HpyCH4III	ACNGT	2 cut(s)	237, 601
HpyCH4V	TGCA	7 cut(s)	4, 105, 251, 383, 412, 468, 663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 428, 569
HpyF3I	CTNAG	3 cut(s)	343, 348, 522
Hsp92II	CATG	5 cut(s)	203, 230, 268, 459, 592
Kzo9I	GATC	4 cut(s)	42, 54, 183, 459
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	3 cut(s)	78, 268, 325
Lsp1109I	GCAGC	3 cut(s)	206, 431, 547
LweI	GCATC	1 cut(s)	657
MalI	GATC	4 cut(s)	44, 56, 185, 461
MboI	GATC	4 cut(s)	42, 54, 183, 459
MboII	GAAGA	4 cut(s)	13, 304, 527, 665
MhlI	GDGCHC	2 cut(s)	21, 114
MluCI	AATT	1 cut(s)	604
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	201
MseI	TTAA	2 cut(s)	603, 703
MspI	CCGG	2 cut(s)	211, 495
MspR9I	CCNGG	2 cut(s)	495, 546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	3 cut(s)	194, 428, 569
NciI	CCSGG	1 cut(s)	495
NcoI	CCATGG	2 cut(s)	455, 588
NdeI	CATATG	2 cut(s)	406, 464
NdeII	GATC	4 cut(s)	42, 54, 183, 459
NlaIII	CATG	5 cut(s)	203, 230, 268, 459, 592
NlaIV	GGNNCC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	493
PkrI	GCNGC	5 cut(s)	190, 193, 196, 421, 562
Ple19I	CGATCG	1 cut(s)	186
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	3 cut(s)	10, 94, 332
PvuI	CGATCG	1 cut(s)	186
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	603, 703
SatI	GCNGC	5 cut(s)	189, 192, 195, 420, 561
Sau3AI	GATC	4 cut(s)	42, 54, 183, 459
Sau96I	GGNCC	3 cut(s)	10, 94, 332
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	495, 546
SduI	GDGCHC	2 cut(s)	21, 114
SetI	ASST	9 cut(s)	15, 273, 315, 334, 349, 429, 509, 528, 640
SfaNI	GCATC	1 cut(s)	657
SinI	GGWCC	2 cut(s)	10, 332
Sse9I	AATT	1 cut(s)	604
SsiI	CCGC	5 cut(s)	33, 122, 157, 189, 192
SspI	AATATT	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	493, 544
StyI	CCWWGG	3 cut(s)	13, 455, 588
TaaI	ACNGT	2 cut(s)	237, 601
TaqI	TCGA	5 cut(s)	24, 57, 182, 375, 584
TasI	AATT	1 cut(s)	604
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	2 cut(s)	191, 194
Tru1I	TTAA	2 cut(s)	603, 703
Tru9I	TTAA	2 cut(s)	603, 703
TscAI	CASTG	3 cut(s)	112, 242, 419
TseI	GCWGC	3 cut(s)	194, 419, 560
TspDTI	ATGAA	5 cut(s)	269, 305, 314, 321, 556
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	3 cut(s)	112, 242, 419
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	10, 332
XagI	CCTNNNNNAGG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.