Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005938

Physical Location & Seq

Genomic Coordinates Reverse (-)

21769436 .. 21771166

Gene Structure 1731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGCAATATGTGAACAAGATAATGAAGATGATGAAGGATGAAAAGCTATTTGCTCCACAAGGAGGTCCAATCATCTTAGCTCAGATTGAAAATGAGTACAATCAAATCCAACTTGCATATAGAGAGTTGGGAGATACATATGTGCAGTGGGCAGCAAAGCTAGCAGTTGGGCAGAATATTAGAGTGCCATGGATCATGTGCAAGCAAAAGGATGCTCCTGATCCAGTGTACCATGGTGGAACAAATTTTGGAAGAACGAGTGTTGTTTTCACAACAACTCGTTACTACGATGAGGCTCCTCTCGATGAATATGCTTTGCAAAGGGACCCGAAATGGAGTCACCTCAAGGACTTGCACAAGGCTATAAATCTATGCAAGAAAACTTTGCTTACTGGAACTCCCGGAGACCAAAGGTTGGGGGAAGAAACTGAGGTTCGTTTCTATGAGAAACCAGGGACAGAGTGTGCTGCTTTCATAGCAAATAATCACTCGACCATGGAAGCAACCGTTAATTGGAGGGGACAGAAGTTTCTCCTGCCACCAGCTTCCATTAGCATCCTCCCCGACTGCAAGACTGTGGTCTTCAATACTCAACAAATGGACGAATGGATTAATATACTCAAAAAAAAATTAATTAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

215

Amino Acids

24.69

Weight (kDa)

7.64

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	1 - 75	3.8e-15	Glycosyl hydrolases family 35
Glyco_hydro_35	PF01301	78 - 122	3.5e-10	Glycosyl hydrolases family 35
GHD	PF17834	146 - 200	9.9e-21	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005938)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476191 RchiOBHm_Chr3g0476351 RchiOBHm_Chr5g0027921 RchiOBHm_Chr7g0210761
rosa_laevigata	RLG00000019861
rosa_multiflora	Rmu_sc0002839.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327550
rosa_rugosa	Rorug06G0398600
rosa_samantha	Rh2AG300200 Rh2AG453200 Rh2CG440200 Rh2CG440300 Rh2DG035200 Rh2DG264500 Rh2DG324300 Rh2DG324400 Rh3BG235000 Rh3BG236300 Rh4CG433300 Rh5AG185900 Rh5AG186000 Rh5BG450000 Rh5DG196500 Rh5DG392800 Rh5DG463400 Rh6AG053200 Rh6AG515900 Rh6CG384500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	418
AclWI	GGATC	2 cut(s)	203, 218
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	2 cut(s)	101, 233
AfiI	CCNNNNNNNGG	3 cut(s)	65, 418, 516
AgsI	TTSAA	2 cut(s)	92, 589
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	4 cut(s)	49, 83, 163, 548
AluI	AGCT	4 cut(s)	49, 83, 163, 548
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	2 cut(s)	203, 218
ApeKI	GCWGC	2 cut(s)	155, 470
ApoI	RAATTY	1 cut(s)	247
AseI	ATTAAT	3 cut(s)	615, 635, 639
AspS9I	GGNCC	2 cut(s)	68, 328
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	68, 328
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	167, 457
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	156, 471
BlsI	GCNGC	2 cut(s)	157, 472
Bme1390I	CCNGG	2 cut(s)	405, 456
Bme18I	GGWCC	2 cut(s)	68, 328
BmgT120I	GGNCC	2 cut(s)	68, 328
BmiI	GGNNCC	3 cut(s)	300, 329, 330
BmrFI	CCNGG	2 cut(s)	405, 456
BmsI	GCATC	2 cut(s)	205, 567
BmtI	GCTAGC	1 cut(s)	167
BoxI	GACNNNNGTC	1 cut(s)	581
BpiI	GAAGAC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	191, 235, 455, 498
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 418, 516
Bse1I	ACTGG	2 cut(s)	227, 400
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	191, 235, 455, 498
BseGI	GGATG	3 cut(s)	46, 220, 558
BseLI	CCNNNNNNNGG	3 cut(s)	65, 418, 516
BseMII	CTCAG	2 cut(s)	98, 423
BseNI	ACTGG	2 cut(s)	227, 400
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	167, 457
BsgI	GTGCAG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	3 cut(s)	341, 472, 537
BslI	CCNNNNNNNGG	3 cut(s)	65, 418, 516
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	3 cut(s)	341, 472, 537
Bso31I	GGTCTC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	195, 223
Bsp19I	CCATGG	3 cut(s)	191, 235, 498
BspCNI	CTCAG	2 cut(s)	97, 424
BspLI	GGNNCC	3 cut(s)	300, 329, 330
BspOI	GCTAGC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	203, 218
BspTNI	GGTCTC	1 cut(s)	402
BsrI	ACTGG	2 cut(s)	227, 400
BssECI	CCNNGG	4 cut(s)	191, 235, 455, 498
BssMI	GATC	2 cut(s)	195, 223
BssT1I	CCWWGG	3 cut(s)	191, 235, 498
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	511, 580
BstC8I	GCNNGC	2 cut(s)	165, 206
BstDEI	CTNAG	3 cut(s)	79, 84, 432
BstDSI	CCRYGG	3 cut(s)	191, 235, 498
BstF5I	GGATG	3 cut(s)	46, 220, 558
BstKTI	GATC	2 cut(s)	198, 226
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	2 cut(s)	195, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 479
BstNI	CCWGG	1 cut(s)	456
BstPAI	GACNNNNGTC	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	403, 454
BstV1I	GCAGC	2 cut(s)	167, 457
BstV2I	GAAGAC	1 cut(s)	577
BtgI	CCRYGG	3 cut(s)	191, 235, 498
BtsCI	GGATG	3 cut(s)	46, 220, 558
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	155, 234
Cac8I	GCNNGC	2 cut(s)	165, 206
Cfr13I	GGNCC	2 cut(s)	68, 328
Csp6I	GTAC	2 cut(s)	100, 232
CviAII	CATG	4 cut(s)	192, 199, 236, 499
CviJI	RGCY	6 cut(s)	49, 83, 163, 299, 365, 548
CviKI_1	RGCY	6 cut(s)	49, 83, 163, 299, 365, 548
CviQI	GTAC	2 cut(s)	100, 232
DdeI	CTNAG	3 cut(s)	79, 84, 432
DpnI	GATC	2 cut(s)	197, 225
DpnII	GATC	2 cut(s)	195, 223
Eco130I	CCWWGG	3 cut(s)	191, 235, 498
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	68, 328
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	3 cut(s)	191, 235, 498
ErhI	CCWWGG	3 cut(s)	191, 235, 498
FaeI	CATG	4 cut(s)	195, 202, 239, 502
FaqI	GGGAC	3 cut(s)	341, 472, 537
FatI	CATG	4 cut(s)	191, 198, 235, 498
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	156, 471
FokI	GGATG	3 cut(s)	53, 227, 545
Fsp4HI	GCNGC	2 cut(s)	156, 471
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	2 cut(s)	156, 471
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	4 cut(s)	195, 202, 239, 502
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	16, 232
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	221, 305
Hpy8I	GTNNAC	2 cut(s)	16, 232
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	511, 580
HpyCH4V	TGCA	7 cut(s)	119, 148, 204, 322, 358, 378, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 479
HpyF3I	CTNAG	3 cut(s)	79, 84, 432
Hsp92II	CATG	4 cut(s)	195, 202, 239, 502
KflI	GGGWCCC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	195, 223
LmnI	GCTCC	4 cut(s)	4, 61, 223, 304
LpnPI	CCDG	8 cut(s)	234, 240, 381, 418, 441, 468, 551, 558
Lsp1109I	GCAGC	2 cut(s)	167, 457
LweI	GCATC	2 cut(s)	205, 567
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	284, 341
MalI	GATC	2 cut(s)	197, 225
MboI	GATC	2 cut(s)	195, 223
MboII	GAAGA	4 cut(s)	40, 267, 437, 577
MluCI	AATT	4 cut(s)	247, 514, 632, 636
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	7 cut(s)	59, 289, 312, 356, 427, 513, 572
MseI	TTAA	4 cut(s)	513, 615, 635, 639
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	405, 456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	164, 479
NciI	CCSGG	1 cut(s)	405
NcoI	CCATGG	3 cut(s)	191, 235, 498
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	2 cut(s)	195, 223
NheI	GCTAGC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	195, 202, 239, 502
NlaIV	GGNNCC	3 cut(s)	300, 329, 330
NmuCI	GTSAC	1 cut(s)	341
PacI	TTAATTAA	1 cut(s)	639
PflMI	CCANNNNNTGG	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	157, 472
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PpuMI	RGGWCCY	1 cut(s)	328
PshAI	GACNNNNGTC	1 cut(s)	581
PshBI	ATTAAT	3 cut(s)	615, 635, 639
Psp5II	RGGWCCY	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	300, 329, 330
PspPI	GGNCC	2 cut(s)	68, 328
PspPPI	RGGWCCY	1 cut(s)	328
RsaI	GTAC	2 cut(s)	101, 233
RsaNI	GTAC	2 cut(s)	100, 232
SaqAI	TTAA	4 cut(s)	513, 615, 635, 639
SatI	GCNGC	2 cut(s)	156, 471
Sau3AI	GATC	2 cut(s)	195, 223
Sau96I	GGNCC	2 cut(s)	68, 328
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	405, 456
SetI	ASST	8 cut(s)	51, 70, 85, 165, 348, 419, 438, 550
SfaNI	GCATC	2 cut(s)	205, 567
SinI	GGWCC	2 cut(s)	68, 328
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	247, 514, 632, 636
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	403, 454
StyI	CCWWGG	3 cut(s)	191, 235, 498
TaaI	ACNGT	2 cut(s)	511, 580
TaqI	TCGA	2 cut(s)	306, 494
TasI	AATT	4 cut(s)	247, 514, 632, 636
TatI	WGTACW	1 cut(s)	99
Tru1I	TTAA	4 cut(s)	513, 615, 635, 639
Tru9I	TTAA	4 cut(s)	513, 615, 635, 639
TscAI	CASTG	2 cut(s)	155, 234
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	2 cut(s)	155, 470
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	5 cut(s)	41, 50, 57, 324, 466
TspRI	CASTG	2 cut(s)	155, 234
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	68, 328
VspI	ATTAAT	3 cut(s)	615, 635, 639
XapI	RAATTY	1 cut(s)	247
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.