Rh6CG384500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005938
Physical Location & Seq
Forward (+)
57108290 .. 57108544
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG384500.1

Sequence Viewer

Length: 255 bp
ATGGCTGCCCATCGACTCCTGCCCATGGACCTTGGGCTCTTCGACGACGGCGGAGATGAGATCAGAGAGGAGATTGAAGCAGAGGAGCGGCTCCGTCGTCCTCCTAATTTGGCCCTCTCCTCCACTGGGCTCACCTCACCGCCACCACTTTTCTCTCTCTCCACAGAGCCTTCCCGCCGACCCACCACCGAGTCCAACTCGATCGCCGCCGCAGCCCATGTCCTCCACCGGCCTCCAAGAGGACATGGGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.17

Weight (kDa)

6.04

Isoelectric Point (pI)

80.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 6 cut(s) 51, 88, 140, 175, 207, 210
AfiI CCNNNNNNNGG 3 cut(s) 25, 126, 239
AgsI TTSAA 1 cut(s) 77
AoxI GGCC 2 cut(s) 111, 230
ApeKI GCWGC 2 cut(s) 5, 212
AspS9I GGNCC 2 cut(s) 28, 112
AsuHPI GGTGA 2 cut(s) 124, 129
AvaII GGWCC 1 cut(s) 28
BanII GRGCYC 2 cut(s) 39, 132
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 64
BisI GCNGC 5 cut(s) 6, 89, 207, 210, 213
BlsI GCNGC 5 cut(s) 7, 90, 208, 211, 214
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 112
BmiI GGNNCC 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BsaJI CCNNGG 2 cut(s) 24, 31
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 126, 239
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 24, 31
BseLI CCNNNNNNNGG 3 cut(s) 25, 126, 239
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 3 cut(s) 83, 98, 109
BseXI GCAGC 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 113, 232
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 25, 126, 239
BsnI GGCC 2 cut(s) 113, 232
Bsp1286I GDGCHC 2 cut(s) 39, 132
Bsp143I GATC 2 cut(s) 60, 201
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 6 cut(s) 51, 88, 140, 175, 207, 210
BspANI GGCC 2 cut(s) 113, 232
BspLI GGNNCC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 24, 31
BssMI GATC 2 cut(s) 60, 201
BssT1I CCWWGG 2 cut(s) 24, 31
Bst6I CTCTTC 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 24
BstENI CCTNNNNNAGG 1 cut(s) 237
BstKTI GATC 2 cut(s) 63, 204
BstMBI GATC 2 cut(s) 60, 201
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 2 cut(s) 113, 232
BtgI CCRYGG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 28, 112
CviAII CATG 3 cut(s) 25, 218, 245
CviJI RGCY 8 cut(s) 5, 37, 91, 113, 130, 169, 215, 232
CviKI_1 RGCY 8 cut(s) 5, 37, 91, 113, 130, 169, 215, 232
DpnI GATC 2 cut(s) 62, 203
DpnII GATC 2 cut(s) 60, 201
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 24, 31
Eco24I GRGCYC 2 cut(s) 39, 132
Eco47I GGWCC 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 24, 31
EcoT38I GRGCYC 2 cut(s) 39, 132
ErhI CCWWGG 2 cut(s) 24, 31
FaeI CATG 3 cut(s) 28, 221, 248
FaiI YATR 3 cut(s) 26, 219, 246
FatI CATG 3 cut(s) 24, 217, 244
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 5 cut(s) 6, 89, 207, 210, 213
FriOI GRGCYC 2 cut(s) 39, 132
Fsp4HI GCNGC 5 cut(s) 6, 89, 207, 210, 213
GluI GCNGC 5 cut(s) 6, 89, 207, 210, 213
HaeIII GGCC 2 cut(s) 113, 232
HapII CCGG 1 cut(s) 229
Hin1II CATG 3 cut(s) 28, 221, 248
HinfI GANTC 2 cut(s) 15, 191
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 124, 129
Hpy188I TCNGA 1 cut(s) 65
Hpy99I CGWCG 3 cut(s) 47, 50, 99
HpyAV CCTTC 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 3 cut(s) 28, 221, 248
Kzo9I GATC 2 cut(s) 60, 201
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 85, 96
LpnPI CCDG 3 cut(s) 32, 111, 242
Lsp1109I GCAGC 1 cut(s) 224
MalI GATC 2 cut(s) 62, 203
MbiI CCGCTC 1 cut(s) 88
MboI GATC 2 cut(s) 60, 201
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 39, 132
MluCI AATT 1 cut(s) 106
MlyI GAGTC 2 cut(s) 9, 200
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 9 cut(s) 61, 76, 111, 125, 130, 145, 233, 233, 243
MspI CCGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 212
NcoI CCATGG 1 cut(s) 24
NdeII GATC 2 cut(s) 60, 201
NlaIII CATG 3 cut(s) 28, 221, 248
NlaIV GGNNCC 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 44
PkrI GCNGC 5 cut(s) 7, 90, 208, 211, 214
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 2 cut(s) 9, 199
PpsI GAGTC 2 cut(s) 9, 199
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 28, 112
PvuI CGATCG 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 44
SatI GCNGC 5 cut(s) 6, 89, 207, 210, 213
Sau3AI GATC 2 cut(s) 60, 201
Sau96I GGNCC 2 cut(s) 28, 112
SchI GAGTC 2 cut(s) 9, 200
SduI GDGCHC 2 cut(s) 39, 132
SetI ASST 2 cut(s) 33, 137
SinI GGWCC 1 cut(s) 28
Sse9I AATT 1 cut(s) 106
SsiI CCGC 6 cut(s) 51, 88, 140, 175, 207, 210
StyI CCWWGG 2 cut(s) 24, 31
TaqI TCGA 3 cut(s) 13, 42, 200
TasI AATT 1 cut(s) 106
TauI GCSGC 3 cut(s) 91, 209, 212
TscAI CASTG 1 cut(s) 130
TseI GCWGC 2 cut(s) 5, 212
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.