Rh6AG053200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005938
Physical Location & Seq
Forward (+)
7820639 .. 7820968
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG053200.1

Sequence Viewer

Length: 330 bp
ATGCAGATGGACCTTGGGCTCTTCGACGACGGCGGAGATGAGATCAGAGAGGAGATCGAAGCAGAGGAGAGGCTCCGTCGTCCTCCTAATCTGGCCCTCTCCTCCACTGGGCTCACCTCACCGCCACCACTTTTCTCTCTCTCCACAGAGCCTTCCCGCCAACCCACCACCGAGTCCAACTCGATCGTCGCCGCAGCCCATGTCCTCCACCGGCCTCCAAGAGGACATGGGCGACAGTTCCATCTTTTTGCAATGAATGTATCTGTCCCAATTTTAATTCAGTGCAAGCAAATTCAACTAGTTTGGTTGTTGGTTATGCTTGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.18

Weight (kDa)

5.45

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 33, 122, 157, 192
AcsI RAATTY 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 108, 221
AgsI TTSAA 1 cut(s) 296
AhlI ACTAGT 1 cut(s) 298
AoxI GGCC 2 cut(s) 93, 212
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 10, 94
AsuHPI GGTGA 2 cut(s) 106, 111
AvaII GGWCC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 21, 114
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 46
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 1 cut(s) 299
BisI GCNGC 2 cut(s) 192, 195
BlsI GCNGC 2 cut(s) 193, 196
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 10, 94
BmiI GGNNCC 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 221
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 108, 221
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 3 cut(s) 65, 80, 91
BseXI GCAGC 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 95, 214
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 108, 221
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 95, 214
Bsp1286I GDGCHC 2 cut(s) 21, 114
Bsp143I GATC 3 cut(s) 42, 54, 183
BspACI CCGC 4 cut(s) 33, 122, 157, 192
BspANI GGCC 2 cut(s) 95, 214
BspLI GGNNCC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 42, 54, 183
BssT1I CCWWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 287
BstENI CCTNNNNNAGG 1 cut(s) 219
BstKTI GATC 3 cut(s) 45, 57, 186
BstMBI GATC 3 cut(s) 42, 54, 183
BstMCI CGRYCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 95, 214
BtsIMutI CAGTG 2 cut(s) 105, 287
Cac8I GCNNGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 10, 94
CviAII CATG 2 cut(s) 200, 227
CviJI RGCY 7 cut(s) 19, 73, 95, 112, 151, 197, 214
CviKI_1 RGCY 7 cut(s) 19, 73, 95, 112, 151, 197, 214
DpnI GATC 3 cut(s) 44, 56, 185
DpnII GATC 3 cut(s) 42, 54, 183
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 21, 114
Eco47I GGWCC 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 21, 114
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 203, 230
FaiI YATR 4 cut(s) 201, 228, 317, 328
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 199, 226
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 192, 195
FriOI GRGCYC 2 cut(s) 21, 114
Fsp4HI GCNGC 2 cut(s) 192, 195
FspBI CTAG 1 cut(s) 299
GluI GCNGC 2 cut(s) 192, 195
HaeIII GGCC 2 cut(s) 95, 214
HapII CCGG 1 cut(s) 211
Hin1II CATG 2 cut(s) 203, 230
HinfI GANTC 1 cut(s) 173
HpaII CCGG 1 cut(s) 211
HphI GGTGA 2 cut(s) 106, 111
Hpy188I TCNGA 1 cut(s) 47
Hpy99I CGWCG 4 cut(s) 29, 32, 81, 191
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 4, 251, 285
Hsp92II CATG 2 cut(s) 203, 230
Kzo9I GATC 3 cut(s) 42, 54, 183
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 77, 93, 224
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 1 cut(s) 299
MalI GATC 3 cut(s) 44, 56, 185
MboI GATC 3 cut(s) 42, 54, 183
MboII GAAGA 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 21, 114
MluCI AATT 3 cut(s) 270, 276, 291
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 201
MseI TTAA 1 cut(s) 275
MspI CCGG 1 cut(s) 211
NdeII GATC 3 cut(s) 42, 54, 183
NlaIII CATG 2 cut(s) 203, 230
NlaIV GGNNCC 1 cut(s) 74
PciSI GCTCTTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 193, 196
Ple19I CGATCG 1 cut(s) 186
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 2 cut(s) 10, 94
PvuI CGATCG 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 2 cut(s) 192, 195
Sau3AI GATC 3 cut(s) 42, 54, 183
Sau96I GGNCC 2 cut(s) 10, 94
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 2 cut(s) 21, 114
SetI ASST 2 cut(s) 15, 119
SinI GGWCC 1 cut(s) 10
SpeI ACTAGT 1 cut(s) 298
Sse9I AATT 3 cut(s) 270, 276, 291
SsiI CCGC 4 cut(s) 33, 122, 157, 192
SspMI CTAG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 3 cut(s) 24, 57, 182
TasI AATT 3 cut(s) 270, 276, 291
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 2 cut(s) 112, 287
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 2 cut(s) 112, 287
VpaK11BI GGWCC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 219
XapI RAATTY 1 cut(s) 291
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.