Rh2DG324300

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005938
Physical Location & Seq
Reverse (-)
40779932 .. 40780698
767 bp
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UTR
Exon/CDS
Intron
Rh2DG324300.1

Sequence Viewer

Length: 270 bp
ATGATTGAAATGAAGAAGAAAGAAAGAAGAACTGATAAGCAAGGAGTCACTTTCCGATCAGATAATGAACCATACAAGAAACACATGGAGCAATATGTGAACAAGATAATGAAGATGATGAAGGATGAAAAGCTATTTGCTCCACAAGGAGGTCCAATCATCTTAGCTCAGATTAATACTTGCAACGGAAGGCATTGTGGAGATACTTTTTCAGGACCTAACAAACCCAACAAGCCTGCTCTATGGACTGAGAATTGGACAGCTCAGTGA

Protein Analysis

89

Amino Acids

10.36

Weight (kDa)

9.52

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 12 - 59 2.1e-11 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 3 cut(s) 133, 167, 263
AluI AGCT 3 cut(s) 133, 167, 263
AseI ATTAAT 1 cut(s) 174
AspS9I GGNCC 2 cut(s) 152, 215
AvaII GGWCC 2 cut(s) 152, 215
Bme18I GGWCC 2 cut(s) 152, 215
BmgT120I GGNCC 2 cut(s) 152, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 182, 240
BslI CCNNNNNNNGG 1 cut(s) 149
Bsp143I GATC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 181, 241
BssMI GATC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 163, 168, 249, 264
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 59
BstMBI GATC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 152, 215
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 133, 167, 235, 263
CviKI_1 RGCY 4 cut(s) 133, 167, 235, 263
DdeI CTNAG 4 cut(s) 163, 168, 249, 264
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 152, 215
EcoO109I RGGNCCY 1 cut(s) 215
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 73, 86, 96, 244
FatI CATG 1 cut(s) 84
FokI GGATG 1 cut(s) 137
Hin1II CATG 1 cut(s) 88
HinfI GANTC 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 56, 61, 171
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 115, 183
HpyCH4V TGCA 1 cut(s) 183
HpyF3I CTNAG 4 cut(s) 163, 168, 249, 264
Hsp92II CATG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 2 cut(s) 88, 145
LpnPI CCDG 2 cut(s) 198, 249
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 4 cut(s) 25, 28, 39, 124
MluCI AATT 1 cut(s) 253
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 1 cut(s) 143
MseI TTAA 1 cut(s) 174
NdeII GATC 1 cut(s) 56
NlaIII CATG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 46
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 215
PspPI GGNCC 2 cut(s) 152, 215
PspPPI RGGWCCY 1 cut(s) 215
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 2 cut(s) 152, 215
SchI GAGTC 1 cut(s) 54
SetI ASST 5 cut(s) 135, 154, 169, 220, 265
SgeI CNNG 9 cut(s) 53, 88, 97, 115, 158, 192, 225, 244, 248
SinI GGWCC 2 cut(s) 152, 215
Sse9I AATT 1 cut(s) 253
TasI AATT 1 cut(s) 253
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 5 cut(s) 26, 81, 125, 134, 141
TspGWI ACGGA 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 152, 215
VspI ATTAAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.