Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005938

Physical Location & Seq

Genomic Coordinates Reverse (-)

57612131 .. 57615145

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCGAGTTGGTCACCTCCGTCGTCTCCACCGTCCTCTGCTTCCAACTCCGACCACTCCCCCACTCAACCCACCTCGACCCGACCCACCAAAAATGCGGGCCTCTCTTGCTCCGATCTTAGCCCTCTTAATCTGCCCCTCTCCTCCACTAGGCTCACCTCCCTGCTGTCGCCGCCACCACTTTTCTCTCTCTCCACAGAGCCTTCCCGCCGACCCACCACCAAATCCAACTCGACCGCCACCGCCGCCCATGTCCTCCACCGGGCTTTAAGAGGACATGCAAACTCCCCACATGCATTCTCGACACCACAAGCCATGTATAGACAAGTGTCCCACCACTCCTCTACCACCTTCACTGCCGCCGTACTCATCCTCCTCATCGGCGCCGCCGACCTCACTCTCCAGAATCTACTCATGGATCAGAAACAAAGTCTCTTGCGCTGGAGAGAACGCCTGGATCCTTCCCTCCGGGTCCCGCTGGAAATCTTGATAATCTACTCCTCGTCTCAGGGAACCAGCTCGTGCACGTTGATCCACGCGCTGATGTGCTGCCGCCTGCCGGATCTACTTGATAATGTTGCCGGACTTCCCAATTACCCCTCCGGCCTTCATATCGTGGCACAGAATCAGATACGTCATCACTGTCACTGTCACCAACACCGTCTCCTACTGTTGCTGCGCCTTCACCGCCGCCGTCCATCATCCAGGACTGCTGGGATTGCATGCTTTCTGGCCCACCCAATTGCAACAACTTCAGATCTGCCGACATCATGTCCCTCTGGCCTCTGCGCATTCACCGCCGGCAGCTCCATCTCCATCCTCTGGTTCGATGCTGACACCAACAACAACTCCTGCCGCACCATCCAGGACTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

31.71

Weight (kDa)

9.25

Isoelectric Point (pI)

70.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005938)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476191 RchiOBHm_Chr3g0476351 RchiOBHm_Chr5g0027921 RchiOBHm_Chr7g0210761
rosa_laevigata	RLG00000019861
rosa_multiflora	Rmu_sc0002839.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327550
rosa_rugosa	Rorug06G0398600
rosa_samantha	Rh2AG300200 Rh2AG453200 Rh2CG440200 Rh2CG440300 Rh2DG035200 Rh2DG264500 Rh2DG324300 Rh2DG324400 Rh3BG235000 Rh3BG236300 Rh4CG433300 Rh5AG185900 Rh5AG186000 Rh5BG450000 Rh5DG196500 Rh5DG392800 Rh5DG463400 Rh6AG053200 Rh6AG515900 Rh6CG384500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	790
AccB1I	GGYRCC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	822
AccII	CGCG	1 cut(s)	539
AclWI	GGATC	5 cut(s)	426, 452, 465, 526, 570
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	4 cut(s)	150, 262, 559, 822
AhdI	GACNNNNNGTC	1 cut(s)	771
AjnI	CCWGG	3 cut(s)	453, 704, 864
AluBI	AGCT	2 cut(s)	519, 807
AluI	AGCT	2 cut(s)	519, 807
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	4 cut(s)	30, 437, 510, 668
Alw44I	GTGCAC	1 cut(s)	523
AlwI	GGATC	5 cut(s)	426, 452, 465, 526, 570
AoxI	GGCC	4 cut(s)	100, 604, 732, 781
ApaLI	GTGCAC	1 cut(s)	523
ApeKI	GCWGC	3 cut(s)	549, 676, 804
AspLEI	GCGC	5 cut(s)	386, 441, 541, 681, 791
AspS9I	GGNCC	3 cut(s)	100, 472, 733
AsuC2I	CCSGG	2 cut(s)	263, 470
AsuHPI	GGTGA	5 cut(s)	6, 148, 644, 677, 787
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	527
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	383
BauI	CACGAG	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	536, 663, 816
BccI	CCATC	4 cut(s)	706, 818, 824, 869
BceAI	ACGGC	2 cut(s)	347, 678
BciT130I	CCWGG	3 cut(s)	455, 706, 866
BcnI	CCSGG	2 cut(s)	263, 470
BcoDI	GTCTC	4 cut(s)	30, 437, 510, 668
BfaI	CTAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	387
BglII	AGATCT	1 cut(s)	757
Bme1390I	CCNGG	5 cut(s)	263, 455, 470, 706, 866
Bme18I	GGWCC	1 cut(s)	472
BmeRI	GACNNNNNGTC	1 cut(s)	771
BmgT120I	GGNCC	3 cut(s)	100, 472, 733
BmiI	GGNNCC	5 cut(s)	385, 459, 473, 474, 514
BmrFI	CCNGG	5 cut(s)	263, 455, 470, 706, 866
BmsI	GCATC	1 cut(s)	820
BoxI	GACNNNNGTC	1 cut(s)	328
BpmI	CTGGAG	2 cut(s)	386, 463
BpuMI	CCSGG	2 cut(s)	263, 470
BsaHI	GRCGYC	1 cut(s)	384
BsaXI	ACNNNNNCTCC	6 cut(s)	357, 387, 648, 678, 833, 863
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 262, 559, 822
Bse118I	RCCGGY	1 cut(s)	800
BseBI	CCWGG	3 cut(s)	455, 706, 866
BseGI	GGATG	4 cut(s)	369, 701, 816, 861
BseLI	CCNNNNNNNGG	4 cut(s)	150, 262, 559, 822
BseMII	CTCAG	1 cut(s)	521
BseRI	GAGGAG	4 cut(s)	133, 331, 365, 490
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	536, 663, 816
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	102, 606, 734, 783
BshNI	GGYRCC	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	6 cut(s)	262, 469, 560, 582, 603, 801
BslFI	GGGAC	3 cut(s)	316, 458, 759
BslI	CCNNNNNNNGG	4 cut(s)	150, 262, 559, 822
BsmAI	GTCTC	4 cut(s)	30, 437, 510, 668
BsmBI	CGTCTC	3 cut(s)	30, 510, 668
BsmFI	GGGAC	3 cut(s)	316, 458, 759
BsmI	GAATGC	2 cut(s)	296, 791
BsnI	GGCC	4 cut(s)	102, 606, 734, 783
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
BspANI	GGCC	4 cut(s)	102, 606, 734, 783
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	5 cut(s)	385, 459, 473, 474, 514
BspPI	GGATC	5 cut(s)	426, 452, 465, 526, 570
BspT107I	GGYRCC	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	800
BssAI	RCCGGY	1 cut(s)	800
BssMI	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
BssNI	GRCGYC	1 cut(s)	384
BssSI	CACGAG	1 cut(s)	520
Bst2BI	CACGAG	1 cut(s)	520
Bst2UI	CCWGG	3 cut(s)	455, 706, 866
Bst4CI	ACNGT	5 cut(s)	33, 644, 650, 662, 672
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	4 cut(s)	100, 557, 724, 802
BstDEI	CTNAG	2 cut(s)	119, 507
BstEII	GGTNACC	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	148
BstF5I	GGATG	4 cut(s)	369, 701, 816, 861
BstFNI	CGCG	1 cut(s)	539
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	5 cut(s)	386, 441, 541, 681, 791
BstKTI	GATC	6 cut(s)	118, 421, 460, 534, 565, 760
BstMAI	GTCTC	4 cut(s)	30, 437, 510, 668
BstMBI	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 172, 245, 687, 719, 797
BstNI	CCWGG	3 cut(s)	455, 706, 866
BstNSI	RCATGY	3 cut(s)	281, 296, 726
BstPAI	GACNNNNGTC	1 cut(s)	328
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	5 cut(s)	261, 453, 468, 704, 864
BstSLI	GKGCMC	1 cut(s)	527
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	3 cut(s)	536, 663, 816
BstX2I	RGATCY	3 cut(s)	457, 562, 757
BstYI	RGATCY	3 cut(s)	457, 562, 757
BsuRI	GGCC	4 cut(s)	102, 606, 734, 783
BtsCI	GGATG	4 cut(s)	369, 701, 816, 861
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	3 cut(s)	354, 640, 646
Cac8I	GCNNGC	4 cut(s)	100, 557, 724, 802
CfoI	GCGC	5 cut(s)	386, 441, 541, 681, 791
Cfr10I	RCCGGY	1 cut(s)	800
Cfr13I	GGNCC	3 cut(s)	100, 472, 733
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	7 cut(s)	251, 278, 293, 316, 415, 723, 771
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	2 cut(s)	119, 507
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	6 cut(s)	117, 420, 459, 533, 564, 759
DpnII	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
DriI	GACNNNNNGTC	1 cut(s)	771
Eam1105I	GACNNNNNGTC	1 cut(s)	771
Eco47I	GGWCC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	738
Eco91I	GGTNACC	1 cut(s)	12
EcoNI	CCTNNNNNAGG	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	12
EcoRII	CCWGG	3 cut(s)	453, 704, 864
EcoT22I	ATGCAT	1 cut(s)	298
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
Esp3I	CGTCTC	3 cut(s)	30, 510, 668
FaeI	CATG	7 cut(s)	254, 281, 296, 319, 418, 726, 774
FaiI	YATR	9 cut(s)	252, 279, 294, 317, 321, 416, 612, 724, 772
FaqI	GGGAC	3 cut(s)	316, 458, 759
FatI	CATG	7 cut(s)	250, 277, 292, 315, 414, 722, 770
FauI	CCCGC	3 cut(s)	91, 215, 483
FokI	GGATG	4 cut(s)	356, 688, 803, 848
FspBI	CTAG	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	790
GlaI	GCGC	5 cut(s)	385, 440, 540, 680, 790
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	2 cut(s)	386, 463
HaeII	RGCGCY	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	102, 606, 734, 783
HapII	CCGG	6 cut(s)	262, 469, 560, 582, 603, 801
HhaI	GCGC	5 cut(s)	386, 441, 541, 681, 791
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	7 cut(s)	254, 281, 296, 319, 418, 726, 774
Hin6I	GCGC	5 cut(s)	384, 439, 539, 679, 789
HinP1I	GCGC	5 cut(s)	384, 439, 539, 679, 789
HinfI	GANTC	2 cut(s)	406, 625
HpaII	CCGG	6 cut(s)	262, 469, 560, 582, 603, 801
HphI	GGTGA	5 cut(s)	6, 148, 644, 677, 787
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	5 cut(s)	52, 115, 423, 630, 757
Hpy188III	TCNNGA	3 cut(s)	301, 403, 487
Hpy8I	GTNNAC	1 cut(s)	525
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	5 cut(s)	213, 361, 471, 617, 692
HpyCH4III	ACNGT	5 cut(s)	33, 644, 650, 662, 672
HpyCH4IV	ACGT	2 cut(s)	527, 634
HpyCH4V	TGCA	5 cut(s)	281, 296, 525, 722, 746
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 172, 245, 687, 719, 797
HpyF3I	CTNAG	2 cut(s)	119, 507
HpySE526I	ACGT	2 cut(s)	527, 634
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	7 cut(s)	254, 281, 296, 319, 418, 726, 774
HspAI	GCGC	5 cut(s)	384, 439, 539, 679, 789
KasI	GGCGCC	1 cut(s)	383
KflI	GGGWCCC	1 cut(s)	472
KroI	GCCGGC	1 cut(s)	800
KroNI	GCCGGC	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
LmnI	GCTCC	2 cut(s)	116, 812
Lsp1109I	GCAGC	3 cut(s)	536, 663, 816
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	527, 634
MaeIII	GTNAC	3 cut(s)	12, 644, 650
MalI	GATC	6 cut(s)	117, 420, 459, 533, 564, 759
MboI	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	3 cut(s)	457, 562, 757
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	2 cut(s)	592, 741
Mly113I	GGCGCC	1 cut(s)	384
MmeI	TCCRAC	3 cut(s)	69, 75, 252
Mph1103I	ATGCAT	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	800
MseI	TTAA	2 cut(s)	129, 269
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	6 cut(s)	262, 469, 560, 582, 603, 801
MspR9I	CCNGG	5 cut(s)	263, 455, 470, 706, 866
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	296, 791
MvaI	CCWGG	3 cut(s)	455, 706, 866
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	6 cut(s)	108, 172, 245, 687, 719, 797
NaeI	GCCGGC	1 cut(s)	802
NarI	GGCGCC	1 cut(s)	384
NciI	CCSGG	2 cut(s)	263, 470
NdeII	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
NgoMIV	GCCGGC	1 cut(s)	800
NlaIII	CATG	7 cut(s)	254, 281, 296, 319, 418, 726, 774
NlaIV	GGNNCC	5 cut(s)	385, 459, 473, 474, 514
NmuCI	GTSAC	3 cut(s)	12, 644, 650
NsbI	TGCGCA	1 cut(s)	790
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	3 cut(s)	281, 296, 726
PaeI	GCATGC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 387
PctI	GAATGC	2 cut(s)	296, 791
PdiI	GCCGGC	1 cut(s)	802
PfeI	GAWTC	2 cut(s)	406, 625
PflMI	CCANNNNNTGG	1 cut(s)	822
PfoI	TCCNGGA	2 cut(s)	704, 864
PluTI	GGCGCC	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	472
PshAI	GACNNNNGTC	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	3 cut(s)	453, 704, 864
PspEI	GGTNACC	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	3 cut(s)	453, 704, 864
PspN4I	GGNNCC	5 cut(s)	385, 459, 473, 474, 514
PspPI	GGNCC	3 cut(s)	100, 472, 733
PspPPI	RGGWCCY	1 cut(s)	472
PsuI	RGATCY	3 cut(s)	457, 562, 757
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	129, 269
Sau3AI	GATC	6 cut(s)	115, 418, 457, 531, 562, 757
Sau96I	GGNCC	3 cut(s)	100, 472, 733
ScrFI	CCNGG	5 cut(s)	263, 455, 470, 706, 866
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	9 cut(s)	19, 77, 161, 353, 396, 521, 530, 637, 809
SfaNI	GCATC	1 cut(s)	820
SfoI	GGCGCC	1 cut(s)	385
SinI	GGWCC	1 cut(s)	472
SphI	GCATGC	1 cut(s)	726
Sse9I	AATT	2 cut(s)	592, 741
SspDI	GGCGCC	1 cut(s)	383
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	5 cut(s)	261, 453, 468, 704, 864
TaaI	ACNGT	5 cut(s)	33, 644, 650, 662, 672
TaiI	ACGT	2 cut(s)	530, 637
TaqI	TCGA	4 cut(s)	77, 233, 302, 828
TasI	AATT	2 cut(s)	592, 741
TauI	GCSGC	7 cut(s)	175, 248, 362, 389, 555, 693, 858
TfiI	GAWTC	2 cut(s)	406, 625
Tru1I	TTAA	2 cut(s)	129, 269
Tru9I	TTAA	2 cut(s)	129, 269
TscAI	CASTG	3 cut(s)	361, 647, 653
TseFI	GTSAC	3 cut(s)	12, 644, 650
TseI	GCWGC	3 cut(s)	549, 676, 804
Tsp45I	GTSAC	3 cut(s)	12, 644, 650
TspDTI	ATGAA	1 cut(s)	599
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	3 cut(s)	361, 647, 653
Van91I	CCANNNNNTGG	1 cut(s)	822
VneI	GTGCAC	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	148
XceI	RCATGY	3 cut(s)	281, 296, 726
XspI	CTAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.