Rh2DG035200

beta-galactosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005938
Physical Location & Seq
Forward (+)
2303720 .. 2303983
264 bp
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UTR
Exon/CDS
Intron
Rh2DG035200.1

Sequence Viewer

Length: 183 bp
ATGGAGCAATATGTGAACAAGATAATGAAGATGATGAAGGGTGAAAAGCTATTTGCTCCACAAGGAGGTCCAATCATCTTAGCTCAGATTGAAAATGAGTATTTGGTGACCCTCCTTCACAAAGAGCAGCAGAAGACATTGCATTTTCAGTTGCTCGGTTTTTCTCCAAGGGTGGGGCTCTAA

Protein Analysis

60

Amino Acids

6.93

Weight (kDa)

9.16

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 1 - 37 4.8e-09 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 65, 173
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 2 cut(s) 49, 83
AluI AGCT 2 cut(s) 49, 83
ApeKI GCWGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 53, 118
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 139
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 173
Bse3DI GCAATG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 65, 173
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 65, 173
Bsp1286I GDGCHC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 79, 84
BstEII GGTNACC 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 68
CviJI RGCY 3 cut(s) 49, 83, 178
CviKI_1 RGCY 3 cut(s) 49, 83, 178
DdeI CTNAG 2 cut(s) 79, 84
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 167
FaiI YATR 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
HphI GGTGA 2 cut(s) 53, 118
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 87
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 31, 125
HpyCH4V TGCA 1 cut(s) 142
HpyF3I CTNAG 2 cut(s) 79, 84
LmnI GCTCC 2 cut(s) 4, 61
Lsp1109I GCAGC 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 106
MboII GAAGA 2 cut(s) 40, 145
MhlI GDGCHC 1 cut(s) 180
MnlI CCTC 2 cut(s) 59, 122
NmuCI GTSAC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 68
SatI GCNGC 1 cut(s) 128
Sau96I GGNCC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 180
SetI ASST 3 cut(s) 51, 70, 85
SgeI CNNG 3 cut(s) 31, 74, 167
SinI GGWCC 1 cut(s) 68
StyI CCWWGG 1 cut(s) 167
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 41, 50
VpaK11BI GGWCC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.