Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005938

Physical Location & Seq

Genomic Coordinates Forward (+)

28181952 .. 28182823

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18859

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTGAGTCTGCCGTCTCCGTCATCTCCACCGTCCTTTGCTTCCAACTCTGACCACTCCCCTACTCAACCCACCTTGACCCGACCCACCAAAAATGCAGGGCTCTCTTGCCCAGATCTTGGCCCTCCTCGCCCTCCTAATTTGCCCCTCTCCTCCACTAGGCTCACCTCCTCGCCGCCTCCACCACTTTTCTCTCTCTCCATAGAGCCTTCCTGCCGATCCACCACCAAGTCCAACTCGACCGCCACAGCCGCCGCCCATGTCCTCCACTGGCCTTTAAGAAGACATGGGACGCAGTTCCATATTTTTGCAATGAATGTTTCTGTCCCAATTTTAATTCAATGCAAGCAATTCAACTATTTTTTCGAGCCGGGTTTACTGAAGGTTTGGGTGCACAAGAAGAATGGAAGAGTGGGTTTGTGGGTTGAAGATTTAAGGAGGTTGTTTGTGGGGTTTGCGGTTTTAGCAAAGCAAAATGAGTTTGATGGGACATGCTGGGAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.5

Weight (kDa)

9.69

Isoelectric Point (pI)

68.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005938)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476191 RchiOBHm_Chr3g0476351 RchiOBHm_Chr5g0027921 RchiOBHm_Chr7g0210761
rosa_laevigata	RLG00000019861
rosa_multiflora	Rmu_sc0002839.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327550
rosa_rugosa	Rorug06G0398600
rosa_samantha	Rh2AG300200 Rh2AG453200 Rh2CG440200 Rh2CG440300 Rh2DG035200 Rh2DG264500 Rh2DG324300 Rh2DG324400 Rh3BG235000 Rh3BG236300 Rh4CG433300 Rh5AG185900 Rh5AG186000 Rh5BG450000 Rh5DG196500 Rh5DG392800 Rh5DG463400 Rh6AG053200 Rh6AG515900 Rh6CG384500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	119
AciI	CCGC	5 cut(s)	176, 243, 252, 255, 458
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	119, 159
AgsI	TTSAA	3 cut(s)	341, 355, 428
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	121, 272
ApaLI	GTGCAC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	16, 157
BaeGI	GKGCMC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	1 cut(s)	479
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	159
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	3 cut(s)	176, 252, 255
BlsI	GCNGC	3 cut(s)	177, 253, 256
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 159
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	119, 159
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	3 cut(s)	117, 142, 160
BseSI	GKGCMC	1 cut(s)	396
BseYI	CCCAGC	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	123, 274
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	371
BslFI	GGGAC	3 cut(s)	304, 311, 502
BslI	CCNNNNNNNGG	2 cut(s)	119, 159
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	3 cut(s)	304, 311, 502
BsnI	GGCC	2 cut(s)	123, 274
Bsp1286I	GDGCHC	2 cut(s)	105, 396
Bsp143I	GATC	2 cut(s)	115, 218
BspACI	CCGC	5 cut(s)	176, 243, 252, 255, 458
BspANI	GGCC	2 cut(s)	123, 274
BspPI	GGATC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	115, 218
Bst4CI	ACNGT	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	347
BstENI	CCTNNNNNAGG	1 cut(s)	157
BstKTI	GATC	2 cut(s)	118, 221
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	115, 218
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 251, 464
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	123, 274
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	301
CviAII	CATG	3 cut(s)	260, 287, 492
CviJI	RGCY	7 cut(s)	103, 123, 163, 208, 251, 274, 370
CviKI_1	RGCY	7 cut(s)	103, 123, 163, 208, 251, 274, 370
DpnI	GATC	2 cut(s)	117, 220
DpnII	GATC	2 cut(s)	115, 218
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	3 cut(s)	263, 290, 495
FaiI	YATR	5 cut(s)	203, 261, 288, 303, 493
FaqI	GGGAC	3 cut(s)	304, 311, 502
FatI	CATG	3 cut(s)	259, 286, 491
Fnu4HI	GCNGC	3 cut(s)	176, 252, 255
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	176, 252, 255
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	3 cut(s)	176, 252, 255
GsaI	CCCAGC	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	123, 274
HapII	CCGG	1 cut(s)	371
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	263, 290, 495
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	2 cut(s)	16, 157
Hpy166II	GTNNAC	2 cut(s)	377, 394
Hpy188I	TCNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	377, 394
HpyAV	CCTTC	2 cut(s)	219, 376
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	98, 311, 345, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 251, 464
Hsp92II	CATG	3 cut(s)	263, 290, 495
Kzo9I	GATC	2 cut(s)	115, 218
LpnPI	CCDG	6 cut(s)	84, 126, 226, 256, 384, 481
MaeI	CTAG	1 cut(s)	159
MalI	GATC	2 cut(s)	117, 220
MboI	GATC	2 cut(s)	115, 218
MboII	GAAGA	4 cut(s)	294, 412, 420, 440
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	105, 396
MluCI	AATT	4 cut(s)	139, 330, 336, 350
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	69, 258
MseI	TTAA	3 cut(s)	278, 335, 434
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	129, 251, 464
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	2 cut(s)	115, 218
NlaIII	CATG	3 cut(s)	263, 290, 495
NspI	RCATGY	1 cut(s)	495
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	177, 253, 256
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	278, 335, 434
SatI	GCNGC	3 cut(s)	176, 252, 255
Sau3AI	GATC	2 cut(s)	115, 218
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	105, 396
SetI	ASST	4 cut(s)	77, 170, 387, 443
Sse9I	AATT	4 cut(s)	139, 330, 336, 350
SsiI	CCGC	5 cut(s)	176, 243, 252, 255, 458
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	239, 366
TasI	AATT	4 cut(s)	139, 330, 336, 350
TauI	GCSGC	3 cut(s)	178, 254, 257
Tru1I	TTAA	3 cut(s)	278, 335, 434
Tru9I	TTAA	3 cut(s)	278, 335, 434
TscAI	CASTG	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	392
XagI	CCTNNNNNAGG	1 cut(s)	157
XceI	RCATGY	1 cut(s)	495
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.