Rh5DG463400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005938
Physical Location & Seq
Reverse (-)
73453297 .. 73453793
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG463400.1

Sequence Viewer

Length: 405 bp
ATGGCGAGTTGGCCGTCTCCGTCATCTCCACCGTCCTCTGCTTCCAACTCCGACCACTCCCCCATTCAACCCACCTCGATTCGACCCACCAAAAATGCGGGGCTCTCTTGCCCCGATCTTGGCCCTCCTCGCCCTCCTAATTTGCCCCTCTCTTCCACTGGGCTCACCTCCCCGCCGCCTCCACCACTTTTCTCTCTCTCCACAGAGCCTTCCTGCCGACCCACCACCAAGTCCAACTCGACCGCCGCCACCGCCCATGTCCTCCACTGGCCTTCAAGAGGACATGGGACGCAGTTCCATATTTTTGCAATGAATGTTTCTGTCCCAATTTTAATTCAATGCAAGCAATTCAACTATTTTTTCGAGCCAGGTTTACTGAAGGTTTGGGTGCACAAGAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.43

Weight (kDa)

9.73

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 98, 173, 176, 243, 246, 252
AcoI YGGCCR 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 398
AfiI CCNNNNNNNGG 2 cut(s) 119, 278
AgsI TTSAA 4 cut(s) 68, 276, 338, 352
AjnI CCWGG 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 21
Alw44I GTGCAC 1 cut(s) 389
AoxI GGCC 3 cut(s) 11, 121, 269
ApaLI GTGCAC 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 393
BanII GRGCYC 2 cut(s) 105, 165
Bbv12I GWGCWC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 21
BisI GCNGC 2 cut(s) 176, 246
BlsI GCNGC 2 cut(s) 177, 247
Bme1390I CCNGG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 369
BmrI ACTGGG 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 278
Bse1I ACTGG 2 cut(s) 163, 272
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 119, 278
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 163, 272
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 393
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 13, 123, 271
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 393
BslFI GGGAC 2 cut(s) 301, 308
BslI CCNNNNNNNGG 2 cut(s) 119, 278
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 2 cut(s) 301, 308
BsnI GGCC 3 cut(s) 13, 123, 271
Bsp1286I GDGCHC 3 cut(s) 105, 165, 393
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 6 cut(s) 98, 173, 176, 243, 246, 252
BspANI GGCC 3 cut(s) 13, 123, 271
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 2 cut(s) 163, 272
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 276
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 129, 251
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 393
BsuRI GGCC 3 cut(s) 13, 123, 271
BtsIMutI CAGTG 2 cut(s) 156, 265
Cac8I GCNNGC 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 298
CviAII CATG 2 cut(s) 257, 284
CviJI RGCY 7 cut(s) 13, 103, 123, 163, 208, 271, 367
CviKI_1 RGCY 7 cut(s) 13, 103, 123, 163, 208, 271, 367
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco24I GRGCYC 2 cut(s) 105, 165
Eco57I CTGAAG 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 2 cut(s) 105, 165
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 2 cut(s) 260, 287
FaiI YATR 3 cut(s) 258, 285, 300
FaqI GGGAC 2 cut(s) 301, 308
FatI CATG 2 cut(s) 256, 283
FauI CCCGC 2 cut(s) 91, 180
Fnu4HI GCNGC 2 cut(s) 176, 246
FriOI GRGCYC 2 cut(s) 105, 165
Fsp4HI GCNGC 2 cut(s) 176, 246
GluI GCNGC 2 cut(s) 176, 246
HaeIII GGCC 3 cut(s) 13, 123, 271
HgaI GACGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 260, 287
HinfI GANTC 1 cut(s) 79
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 374, 391
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 374, 391
HpyAV CCTTC 3 cut(s) 219, 282, 373
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 308, 342, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 251
Hsp92II CATG 2 cut(s) 260, 287
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 144, 226, 253, 354, 381
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 144
MhlI GDGCHC 3 cut(s) 105, 165, 393
MluCI AATT 5 cut(s) 139, 327, 333, 347, 400
MmeI TCCRAC 3 cut(s) 69, 75, 258
MseI TTAA 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 2 cut(s) 129, 251
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 260, 287
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 2 cut(s) 177, 247
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspPI GGNCC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 176, 246
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 3 cut(s) 105, 165, 393
SetI ASST 4 cut(s) 77, 170, 373, 384
Sse9I AATT 5 cut(s) 139, 327, 333, 347, 400
SsiI CCGC 6 cut(s) 98, 173, 176, 243, 246, 252
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 4 cut(s) 77, 82, 239, 363
TasI AATT 5 cut(s) 139, 327, 333, 347, 400
TauI GCSGC 2 cut(s) 178, 248
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 163, 272
TspDTI ATGAA 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 9
TspRI CASTG 2 cut(s) 163, 272
VneI GTGCAC 1 cut(s) 389
XagI CCTNNNNNAGG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.