Rh6AG515900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005938
Physical Location & Seq
Forward (+)
68562861 .. 68563530
670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG515900.1

Sequence Viewer

Length: 378 bp
ATGATCCCTTGGCAGAACCCTAATTTGGGTCTCTGTTTCCTCTCATTTGCTCTGCTATCTTCCCTCCTTTCCCCAGCAAACTCCCAACATGCATTCTCGACACCACAAGCCTTGTATAGACATGTGTCCCACCACTCCACTGCTGCTGTACTCATCCTCCTCATCGGTGCCGCCGACCTCACTCTCCAGAATTCATTCATGGATCGGAAACAAAGCCTCATACGCCGGAGAGAACGCCTGGATCCTTCCCTTCAGGTCTCCGTTGGAAATCTCGGTAATCTGCTCCTGCTTGTGCACGTTGATCCACACGCTGATGTGCTGCCGGATCCACTTGATAATGCTGCCGGACTTCCCAATCGGATCAAATTCCCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.73

Weight (kDa)

8.05

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 1 cut(s) 171
AclWI GGATC 7 cut(s) 210, 236, 249, 296, 320, 333, 368
AcsI RAATTY 2 cut(s) 190, 365
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 25, 26
AflIII ACRYGT 1 cut(s) 121
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 35, 262
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 7 cut(s) 210, 236, 249, 296, 320, 333, 368
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 143, 319, 341
ApoI RAATTY 2 cut(s) 190, 365
Asp700I GAANNNNTTC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 297
BamHI GGATCC 2 cut(s) 241, 325
BanI GGYRCC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 3 cut(s) 130, 306, 328
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 35, 262
BisI GCNGC 4 cut(s) 144, 171, 320, 342
BlsI GCNGC 4 cut(s) 145, 172, 321, 343
Bme1390I CCNGG 1 cut(s) 239
BmiI GGNNCC 3 cut(s) 169, 243, 327
BmrFI CCNGG 1 cut(s) 239
BoxI GACNNNNGTC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 35, 262
BsaJI CCNNGG 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 26
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 25, 26
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 3 cut(s) 130, 306, 328
BseYI CCCAGC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 226, 323, 345
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 25, 26
BsmAI GTCTC 2 cut(s) 35, 262
BsmFI GGGAC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 92
Bso31I GGTCTC 2 cut(s) 35, 262
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 6 cut(s) 3, 202, 241, 301, 325, 360
BspACI CCGC 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 169, 243, 327
BspPI GGATC 7 cut(s) 210, 236, 249, 296, 320, 333, 368
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 35, 262
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 6 cut(s) 3, 202, 241, 301, 325, 360
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 6 cut(s) 6, 205, 244, 304, 328, 363
BstMAI GTCTC 2 cut(s) 35, 262
BstMBI GATC 6 cut(s) 3, 202, 241, 301, 325, 360
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 2 cut(s) 92, 125
BstPAI GACNNNNGTC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 130, 306, 328
BstX2I RGATCY 2 cut(s) 241, 325
BstYI RGATCY 2 cut(s) 241, 325
BtsCI GGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Csp6I GTAC 1 cut(s) 149
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 3 cut(s) 89, 122, 199
CviJI RGCY 2 cut(s) 110, 216
CviKI_1 RGCY 2 cut(s) 110, 216
CviQI GTAC 1 cut(s) 149
DpnI GATC 6 cut(s) 5, 204, 243, 303, 327, 362
DpnII GATC 6 cut(s) 3, 202, 241, 301, 325, 360
Eco130I CCWWGG 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 35, 262
Eco57I CTGAAG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 3 cut(s) 92, 125, 202
FaiI YATR 5 cut(s) 90, 117, 123, 200, 221
FaqI GGGAC 1 cut(s) 112
FatI CATG 3 cut(s) 88, 121, 198
Fnu4HI GCNGC 4 cut(s) 144, 171, 320, 342
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 4 cut(s) 144, 171, 320, 342
GluI GCNGC 4 cut(s) 144, 171, 320, 342
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 170
HapII CCGG 3 cut(s) 226, 323, 345
Hin1II CATG 3 cut(s) 92, 125, 202
HpaII CCGG 3 cut(s) 226, 323, 345
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 207, 360
Hpy188III TCNNGA 2 cut(s) 97, 187
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 255, 260
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 92, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 3 cut(s) 92, 125, 202
Kzo9I GATC 6 cut(s) 3, 202, 241, 301, 325, 360
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 9 cut(s) 87, 200, 224, 239, 239, 251, 299, 336, 358
Lsp1109I GCAGC 3 cut(s) 130, 306, 328
MaeII ACGT 1 cut(s) 297
MalI GATC 6 cut(s) 5, 204, 243, 303, 327, 362
MboI GATC 6 cut(s) 3, 202, 241, 301, 325, 360
MboII GAAGA 1 cut(s) 51
MflI RGATCY 2 cut(s) 241, 325
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 3 cut(s) 22, 190, 365
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 6 cut(s) 50, 74, 167, 170, 188, 227
Mph1103I ATGCAT 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 3 cut(s) 226, 323, 345
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 6 cut(s) 3, 202, 241, 301, 325, 360
NlaIII CATG 3 cut(s) 92, 125, 202
NlaIV GGNNCC 3 cut(s) 169, 243, 327
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 2 cut(s) 92, 125
PciI ACATGT 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 194
PkrI GCNGC 4 cut(s) 145, 172, 321, 343
PscI ACATGT 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 169, 243, 327
PsuI RGATCY 2 cut(s) 241, 325
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 312
SatI GCNGC 4 cut(s) 144, 171, 320, 342
Sau3AI GATC 6 cut(s) 3, 202, 241, 301, 325, 360
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 297
SetI ASST 3 cut(s) 180, 258, 300
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 3 cut(s) 22, 190, 365
SsiI CCGC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 98
TasI AATT 3 cut(s) 22, 190, 365
TatI WGTACW 1 cut(s) 148
TauI GCSGC 1 cut(s) 173
TscAI CASTG 1 cut(s) 145
TseI GCWGC 3 cut(s) 143, 319, 341
TspDTI ATGAA 2 cut(s) 183, 187
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 1 cut(s) 145
VneI GTGCAC 1 cut(s) 293
XapI RAATTY 2 cut(s) 190, 365
XceI RCATGY 2 cut(s) 92, 125
XmnI GAANNNNTTC 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.