Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005938

Physical Location & Seq

Genomic Coordinates Reverse (-)

59718865 .. 59719492

Gene Structure 628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG440200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGCTATATGTGAACAAGATAATGAAGATGATGAAGGATGAAAAGCTATTTGCTCCACAAGGAGGTCCAATCATCTTAGCTCAGATTGAAAATGAGTACAATCAAATCGAACTTGCATATAGAGAGTTGGGAGATACATATGTGCAGTGGGCAGCAAAGCTGGCAGTTGGGCAGAATATTGGAGTGCCATGGATCATATGCAAGAAAACTTTGCTTACTGGAACTCCCGGAGACCAAAGGTTGGGGGAAGAAACTGAGGTTCGTTTCTATGAGAAACCAGGGACAGAGTGTGCTGCTTTCATAGCAAATAATCACTCGACCATGGAAGCAACCGTTAATTGGAGGGGACAGAAGTTTCTCCTGCCACCAGCTTCCATTAGCATCCTCCCCGACTGCAAGACTGGTCTTCAATACTCAACAAATGGACGAATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

5.49

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	1 - 71	7.1e-14	Glycosyl hydrolases family 35
GHD	PF17834	88 - 135	4.5e-16	Beta-sandwich domain in beta galactosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005938)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476191 RchiOBHm_Chr3g0476351 RchiOBHm_Chr5g0027921 RchiOBHm_Chr7g0210761
rosa_laevigata	RLG00000019861
rosa_multiflora	Rmu_sc0002839.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327550
rosa_rugosa	Rorug06G0398600
rosa_samantha	Rh2AG300200 Rh2AG453200 Rh2CG440200 Rh2CG440300 Rh2DG035200 Rh2DG264500 Rh2DG324300 Rh2DG324400 Rh3BG235000 Rh3BG236300 Rh4CG433300 Rh5AG185900 Rh5AG186000 Rh5BG450000 Rh5DG196500 Rh5DG392800 Rh5DG463400 Rh6AG053200 Rh6AG515900 Rh6CG384500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	244
AclWI	GGATC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	65, 244, 342
AgsI	TTSAA	2 cut(s)	92, 413
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	7, 49, 83, 163, 374
AluI	AGCT	5 cut(s)	7, 49, 83, 163, 374
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	155, 296
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	167, 283
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	156, 297
BlsI	GCNGC	2 cut(s)	157, 298
Bme1390I	CCNGG	2 cut(s)	231, 282
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmrFI	CCNGG	2 cut(s)	231, 282
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	191, 281, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 244, 342
Bse1I	ACTGG	2 cut(s)	226, 409
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	191, 281, 324
BseGI	GGATG	2 cut(s)	46, 384
BseLI	CCNNNNNNNGG	3 cut(s)	65, 244, 342
BseMII	CTCAG	2 cut(s)	98, 249
BseNI	ACTGG	2 cut(s)	226, 409
BseXI	GCAGC	2 cut(s)	167, 283
BsgI	GTGCAG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	298, 363
BslI	CCNNNNNNNGG	3 cut(s)	65, 244, 342
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	298, 363
Bso31I	GGTCTC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	195
Bsp19I	CCATGG	2 cut(s)	191, 324
BspCNI	CTCAG	2 cut(s)	97, 250
BspPI	GGATC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	226, 409
BssECI	CCNNGG	3 cut(s)	191, 281, 324
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	191, 324
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	79, 84, 258
BstDSI	CCRYGG	2 cut(s)	191, 324
BstF5I	GGATG	2 cut(s)	46, 384
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 305
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	229, 280
BstV1I	GCAGC	2 cut(s)	167, 283
BstV2I	GAAGAC	1 cut(s)	401
BtgI	CCRYGG	2 cut(s)	191, 324
BtsCI	GGATG	2 cut(s)	46, 384
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	192, 325
CviJI	RGCY	5 cut(s)	7, 49, 83, 163, 374
CviKI_1	RGCY	5 cut(s)	7, 49, 83, 163, 374
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	3 cut(s)	79, 84, 258
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	191, 324
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	191, 324
ErhI	CCWWGG	2 cut(s)	191, 324
FaeI	CATG	2 cut(s)	195, 328
FaqI	GGGAC	2 cut(s)	298, 363
FatI	CATG	2 cut(s)	191, 324
FauNDI	CATATG	2 cut(s)	142, 200
Fnu4HI	GCNGC	2 cut(s)	156, 297
FokI	GGATG	2 cut(s)	53, 371
Fsp4HI	GCNGC	2 cut(s)	156, 297
GluI	GCNGC	2 cut(s)	156, 297
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	195, 328
HpaII	CCGG	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	4 cut(s)	119, 148, 204, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 305
HpyF3I	CTNAG	3 cut(s)	79, 84, 258
Hsp92II	CATG	2 cut(s)	195, 328
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	4, 61
LpnPI	CCDG	8 cut(s)	149, 207, 244, 267, 294, 377, 384, 390
Lsp1109I	GCAGC	2 cut(s)	167, 283
LweI	GCATC	1 cut(s)	393
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	3 cut(s)	40, 263, 401
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	4 cut(s)	59, 253, 339, 398
MseI	TTAA	2 cut(s)	339, 439
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	231, 282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	164, 305
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	2 cut(s)	191, 324
NdeI	CATATG	2 cut(s)	142, 200
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	2 cut(s)	195, 328
PflMI	CCANNNNNTGG	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	157, 298
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	339, 439
SatI	GCNGC	2 cut(s)	156, 297
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	231, 282
SetI	ASST	8 cut(s)	9, 51, 70, 85, 165, 245, 264, 376
SfaNI	GCATC	1 cut(s)	393
SinI	GGWCC	1 cut(s)	68
Sse9I	AATT	1 cut(s)	340
SspI	AATATT	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	229, 280
StyI	CCWWGG	2 cut(s)	191, 324
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	111, 320
TasI	AATT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	339, 439
Tru9I	TTAA	2 cut(s)	339, 439
TscAI	CASTG	1 cut(s)	155
TseI	GCWGC	2 cut(s)	155, 296
TspDTI	ATGAA	4 cut(s)	41, 50, 57, 292
TspRI	CASTG	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.