Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002839.1

Orthogroup ID

OG0005938

Physical Location & Seq

Genomic Coordinates Reverse (-)

1214 .. 2569

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002839.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggaccttgggctcttcgacgacggcggagatgagatcagagaggagaggctccgtcgtcctcctaatctggccctctcctccactgggctcacctcaccgccaccacttttctctctctccacagagccttcccgccgacccaccaccgagtccaactcgatcgccgccgcagcccatgtcctccaccggcctccaagaggacatgggcgacagtaccgagtatttggtgaccctccttcacaaagagcagcagaagacattgcattttcagttgctcggtttttctccaagggtggggctctaaccaactactatatgtaccatggtggaacgaattttggaagaacaagtgttgttttcacaacaactcgttactacgatgaggctcctctcgatgaatatgctttgcaaagggacccgaaatggagtcacctcaaggacttgcacaaggctataaatctatgcaagaaaactttgcttactggaactcccggagaccaaaggttgggagaagagactgaggttcgtttctatgagaaaccagggacagagtgtgctgctttcatagcaaataatcactcgaccatggaagcaaccgttaattggaggggacagaagtttctcctgccaccaggttccattagcatcctccccgactgcaagactgtggtcttcaatactcaacaaatggacgaatggattaatatactcaaaaaaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

241

Amino Acids

27.05

Weight (kDa)

7.76

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005938)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476191 RchiOBHm_Chr3g0476351 RchiOBHm_Chr5g0027921 RchiOBHm_Chr7g0210761
rosa_laevigata	RLG00000019861
rosa_multiflora	Rmu_sc0002839.1_g000001
rosa_roxburghii	Rroxscaffold_4G00327550
rosa_rugosa	Rorug06G0398600
rosa_samantha	Rh2AG300200 Rh2AG453200 Rh2CG440200 Rh2CG440300 Rh2DG035200 Rh2DG264500 Rh2DG324300 Rh2DG324400 Rh3BG235000 Rh3BG236300 Rh4CG433300 Rh5AG185900 Rh5AG186000 Rh5BG450000 Rh5DG196500 Rh5DG392800 Rh5DG463400 Rh6AG053200 Rh6AG515900 Rh6CG384500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	508
AciI	CCGC	5 cut(s)	27, 101, 136, 168, 171
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	2 cut(s)	218, 323
AfiI	CCNNNNNNNGG	5 cut(s)	87, 200, 297, 508, 606
AgsI	TTSAA	1 cut(s)	679
AjnI	CCWGG	2 cut(s)	544, 634
Alw26I	GTCTC	2 cut(s)	492, 512
AoxI	GGCC	2 cut(s)	72, 191
ApeKI	GCWGC	3 cut(s)	173, 251, 560
ApoI	RAATTY	1 cut(s)	337
AseI	ATTAAT	1 cut(s)	705
AspS9I	GGNCC	3 cut(s)	4, 73, 418
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	4 cut(s)	85, 90, 242, 425
AvaII	GGWCC	2 cut(s)	4, 418
BanII	GRGCYC	3 cut(s)	15, 93, 304
BbsI	GAAGAC	2 cut(s)	264, 667
BbvI	GCAGC	3 cut(s)	185, 263, 547
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	2 cut(s)	546, 636
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	2 cut(s)	492, 512
BisI	GCNGC	5 cut(s)	168, 171, 174, 252, 561
BlsI	GCNGC	5 cut(s)	169, 172, 175, 253, 562
Bme1390I	CCNGG	3 cut(s)	495, 546, 636
Bme18I	GGWCC	2 cut(s)	4, 418
BmgT120I	GGNCC	3 cut(s)	4, 73, 418
BmiI	GGNNCC	5 cut(s)	53, 390, 419, 420, 640
BmrFI	CCNGG	3 cut(s)	495, 546, 636
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	657
BmuI	ACTGGG	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	671
BpiI	GAAGAC	2 cut(s)	264, 667
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	5 cut(s)	7, 291, 325, 545, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 200, 297, 508, 606
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	91, 490
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	546, 636
BseDI	CCNNGG	5 cut(s)	7, 291, 325, 545, 588
BseGI	GGATG	1 cut(s)	648
BseLI	CCNNNNNNNGG	5 cut(s)	87, 200, 297, 508, 606
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	91, 490
BseRI	GAGGAG	3 cut(s)	59, 70, 381
BseXI	GCAGC	3 cut(s)	185, 263, 547
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	74, 193
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	190, 495
BslFI	GGGAC	3 cut(s)	431, 562, 627
BslI	CCNNNNNNNGG	5 cut(s)	87, 200, 297, 508, 606
BsmAI	GTCTC	2 cut(s)	492, 512
BsmFI	GGGAC	3 cut(s)	431, 562, 627
BsnI	GGCC	2 cut(s)	74, 193
Bso31I	GGTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	3 cut(s)	15, 93, 304
Bsp143I	GATC	2 cut(s)	36, 162
Bsp19I	CCATGG	2 cut(s)	325, 588
BspACI	CCGC	5 cut(s)	27, 101, 136, 168, 171
BspANI	GGCC	2 cut(s)	74, 193
BspCNI	CTCAG	1 cut(s)	514
BspLI	GGNNCC	5 cut(s)	53, 390, 419, 420, 640
BspQI	GCTCTTC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	91, 490
BssAI	RCCGGY	1 cut(s)	189
BssECI	CCNNGG	5 cut(s)	7, 291, 325, 545, 588
BssMI	GATC	2 cut(s)	36, 162
BssT1I	CCWWGG	4 cut(s)	7, 291, 325, 588
Bst2UI	CCWGG	2 cut(s)	546, 636
Bst4CI	ACNGT	3 cut(s)	216, 601, 670
Bst6I	CTCTTC	2 cut(s)	20, 510
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	2 cut(s)	325, 588
BstEII	GGTNACC	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	648
BstKTI	GATC	2 cut(s)	39, 165
BstMAI	GTCTC	2 cut(s)	492, 512
BstMBI	GATC	2 cut(s)	36, 162
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 569
BstNI	CCWGG	2 cut(s)	546, 636
BstPAI	GACNNNNGTC	1 cut(s)	671
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	3 cut(s)	493, 544, 634
BstV1I	GCAGC	3 cut(s)	185, 263, 547
BstV2I	GAAGAC	2 cut(s)	264, 667
BsuRI	GGCC	2 cut(s)	74, 193
BtgI	CCRYGG	2 cut(s)	325, 588
BtsCI	GGATG	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	3 cut(s)	4, 73, 418
CsiI	ACCWGGT	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	217, 322
CviAII	CATG	4 cut(s)	179, 206, 326, 589
CviQI	GTAC	2 cut(s)	217, 322
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	2 cut(s)	38, 164
DpnII	GATC	2 cut(s)	36, 162
Eam1104I	CTCTTC	2 cut(s)	20, 510
EarI	CTCTTC	2 cut(s)	20, 510
EciI	GGCGGA	1 cut(s)	42
Eco130I	CCWWGG	4 cut(s)	7, 291, 325, 588
Eco24I	GRGCYC	3 cut(s)	15, 93, 304
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	4, 418
Eco91I	GGTNACC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	544, 634
EcoT14I	CCWWGG	4 cut(s)	7, 291, 325, 588
EcoT38I	GRGCYC	3 cut(s)	15, 93, 304
ErhI	CCWWGG	4 cut(s)	7, 291, 325, 588
FaeI	CATG	4 cut(s)	182, 209, 329, 592
FaqI	GGGAC	3 cut(s)	431, 562, 627
FatI	CATG	4 cut(s)	178, 205, 325, 588
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	168, 171, 174, 252, 561
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	3 cut(s)	15, 93, 304
Fsp4HI	GCNGC	5 cut(s)	168, 171, 174, 252, 561
GluI	GCNGC	5 cut(s)	168, 171, 174, 252, 561
HaeIII	GGCC	2 cut(s)	74, 193
HapII	CCGG	2 cut(s)	190, 495
Hin1II	CATG	4 cut(s)	182, 209, 329, 592
HinfI	GANTC	2 cut(s)	152, 430
HpaII	CCGG	2 cut(s)	190, 495
HphI	GGTGA	4 cut(s)	85, 90, 242, 425
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	395
Hpy99I	CGWCG	3 cut(s)	23, 26, 60
HpyAV	CCTTC	2 cut(s)	141, 249
HpyCH4III	ACNGT	3 cut(s)	216, 601, 670
HpyCH4V	TGCA	5 cut(s)	266, 412, 448, 468, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 569
HpyF3I	CTNAG	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	182, 209, 329, 592
KflI	GGGWCCC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	36, 162
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	57, 394
Lsp1109I	GCAGC	3 cut(s)	185, 263, 547
LweI	GCATC	1 cut(s)	657
MabI	ACCWGGT	1 cut(s)	634
MaeIII	GTNAC	3 cut(s)	230, 374, 431
MalI	GATC	2 cut(s)	38, 164
MboI	GATC	2 cut(s)	36, 162
MboII	GAAGA	5 cut(s)	7, 269, 357, 527, 667
MhlI	GDGCHC	3 cut(s)	15, 93, 304
MluCI	AATT	3 cut(s)	337, 604, 721
MlyI	GAGTC	2 cut(s)	161, 439
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	3 cut(s)	603, 705, 724
MspI	CCGG	2 cut(s)	190, 495
MspR9I	CCNGG	3 cut(s)	495, 546, 636
MvaI	CCWGG	2 cut(s)	546, 636
MwoI	GCNNNNNNNGC	2 cut(s)	173, 569
NciI	CCSGG	1 cut(s)	495
NcoI	CCATGG	2 cut(s)	325, 588
NdeII	GATC	2 cut(s)	36, 162
NlaIII	CATG	4 cut(s)	182, 209, 329, 592
NlaIV	GGNNCC	5 cut(s)	53, 390, 419, 420, 640
NmuCI	GTSAC	2 cut(s)	230, 431
PciSI	GCTCTTC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	493
PkrI	GCNGC	5 cut(s)	169, 172, 175, 253, 562
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	2 cut(s)	160, 438
PpsI	GAGTC	2 cut(s)	160, 438
PpuMI	RGGWCCY	1 cut(s)	418
PshAI	GACNNNNGTC	1 cut(s)	671
PshBI	ATTAAT	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	544, 634
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	2 cut(s)	544, 634
PspN4I	GGNNCC	5 cut(s)	53, 390, 419, 420, 640
PspPI	GGNCC	3 cut(s)	4, 73, 418
PspPPI	RGGWCCY	1 cut(s)	418
PvuI	CGATCG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	218, 323
RsaNI	GTAC	2 cut(s)	217, 322
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	3 cut(s)	603, 705, 724
SatI	GCNGC	5 cut(s)	168, 171, 174, 252, 561
Sau3AI	GATC	2 cut(s)	36, 162
Sau96I	GGNCC	3 cut(s)	4, 73, 418
SchI	GAGTC	2 cut(s)	161, 439
ScrFI	CCNGG	3 cut(s)	495, 546, 636
SduI	GDGCHC	3 cut(s)	15, 93, 304
SetI	ASST	6 cut(s)	9, 98, 438, 509, 528, 640
SexAI	ACCWGGT	1 cut(s)	634
SfaNI	GCATC	1 cut(s)	657
SinI	GGWCC	2 cut(s)	4, 418
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	337, 604, 721
SsiI	CCGC	5 cut(s)	27, 101, 136, 168, 171
StyD4I	CCNGG	3 cut(s)	493, 544, 634
StyI	CCWWGG	4 cut(s)	7, 291, 325, 588
TaaI	ACNGT	3 cut(s)	216, 601, 670
TaqI	TCGA	4 cut(s)	18, 161, 396, 584
TasI	AATT	3 cut(s)	337, 604, 721
TauI	GCSGC	2 cut(s)	170, 173
Tru1I	TTAA	3 cut(s)	603, 705, 724
Tru9I	TTAA	3 cut(s)	603, 705, 724
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	230, 431
TseI	GCWGC	3 cut(s)	173, 251, 560
Tsp45I	GTSAC	2 cut(s)	230, 431
TspDTI	ATGAA	2 cut(s)	414, 556
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	4, 418
VspI	ATTAAT	1 cut(s)	705
XagI	CCTNNNNNAGG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.