Rh5DG392800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0005938
Physical Location & Seq
Forward (+)
61553272 .. 61553838
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG392800.1

Sequence Viewer

Length: 402 bp
ATGATCCCTTGGCAGAACCCTAATTTGGGTCTCTGTCTCCTCTCATTTGCTCTACTATCTTCCCTCCTTTCCCCAGCAAACTCCCAACATGCATTCTCGACACCACAAGCCTTGTATAGACACGTGTCCCACCACTCCATTGATGCTGTACTTATCCTCCTCATTGGTACCGCCGACCTCACTCTCCAGAATCCATTCATGGATCAGAAACAAAGCCTCCTACGCCAGAGAGAACGCCTGGATCCTTCCCTTCGGGTCTCCGCTGGAAATCTCGGTAATCTGCTCCTGCTTGTGCACGTTGATCCACACGCTGATGTGCTGCTGGATCTACTTGATAATGCTGCTGGACTTCACAATAACCTCCCAATCGGATCAAATGACCTCTCCTCCCGAACCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.51

Weight (kDa)

6.1

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 2 cut(s) 171, 261
AclWI GGATC 6 cut(s) 210, 236, 249, 296, 333, 379
AcvI CACGTG 1 cut(s) 124
AfaI GTAC 2 cut(s) 150, 169
AfiI CCNNNNNNNGG 2 cut(s) 25, 26
AflIII ACRYGT 2 cut(s) 121, 123
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 3 cut(s) 35, 41, 262
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 6 cut(s) 210, 236, 249, 296, 333, 379
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 319, 341
Asp700I GAANNNNTTC 1 cut(s) 194
Asp718I GGTACC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 297
BamHI GGATCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 167
BbrPI CACGTG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 306, 328
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 3 cut(s) 35, 41, 262
BisI GCNGC 2 cut(s) 320, 342
BlsI GCNGC 2 cut(s) 321, 343
Bme1390I CCNGG 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 169, 243
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 133
BoxI GACNNNNGTC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 124
BsaI GGTCTC 2 cut(s) 35, 262
BsaJI CCNNGG 1 cut(s) 8
BsaXI ACNNNNNCTCC 6 cut(s) 141, 171, 201, 231, 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 26
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 25, 26
BseRI GAGGAG 3 cut(s) 29, 149, 376
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 2 cut(s) 306, 328
BseYI CCCAGC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 297
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 25, 26
BsmAI GTCTC 3 cut(s) 35, 41, 262
BsmFI GGGAC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 92
Bso31I GGTCTC 2 cut(s) 35, 262
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 6 cut(s) 3, 202, 241, 301, 325, 371
BspACI CCGC 2 cut(s) 171, 261
BspLI GGNNCC 2 cut(s) 169, 243
BspPI GGATC 6 cut(s) 210, 236, 249, 296, 333, 379
BspT107I GGYRCC 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 35, 262
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 6 cut(s) 3, 202, 241, 301, 325, 371
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 124
BstKTI GATC 6 cut(s) 6, 205, 244, 304, 328, 374
BstMAI GTCTC 3 cut(s) 35, 41, 262
BstMBI GATC 6 cut(s) 3, 202, 241, 301, 325, 371
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 92
BstPAI GACNNNNGTC 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 306, 328
BstX2I RGATCY 2 cut(s) 241, 325
BstYI RGATCY 2 cut(s) 241, 325
Csp6I GTAC 2 cut(s) 149, 168
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 2 cut(s) 89, 199
CviJI RGCY 2 cut(s) 110, 216
CviKI_1 RGCY 2 cut(s) 110, 216
CviQI GTAC 2 cut(s) 149, 168
DpnI GATC 6 cut(s) 5, 204, 243, 303, 327, 373
DpnII GATC 6 cut(s) 3, 202, 241, 301, 325, 371
Eco130I CCWWGG 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 35, 262
Eco72I CACGTG 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 8
EcoT22I ATGCAT 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 92, 202
FaiI YATR 3 cut(s) 90, 117, 200
FaqI GGGAC 1 cut(s) 112
FatI CATG 2 cut(s) 88, 198
Fnu4HI GCNGC 2 cut(s) 320, 342
Fsp4HI GCNGC 2 cut(s) 320, 342
GluI GCNGC 2 cut(s) 320, 342
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 170
Hin1II CATG 2 cut(s) 92, 202
HinfI GANTC 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 207, 371
Hpy188III TCNNGA 3 cut(s) 97, 187, 390
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 2 cut(s) 255, 260
HpyCH4IV ACGT 2 cut(s) 123, 297
HpyCH4V TGCA 2 cut(s) 92, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpySE526I ACGT 2 cut(s) 123, 297
Hsp92II CATG 2 cut(s) 92, 202
KpnI GGTACC 1 cut(s) 171
Kzo9I GATC 6 cut(s) 3, 202, 241, 301, 325, 371
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 9 cut(s) 87, 200, 224, 239, 249, 251, 299, 308, 330
Lsp1109I GCAGC 2 cut(s) 306, 328
LweI GCATC 1 cut(s) 133
MaeII ACGT 2 cut(s) 123, 297
MalI GATC 6 cut(s) 5, 204, 243, 303, 327, 373
MboI GATC 6 cut(s) 3, 202, 241, 301, 325, 371
MboII GAAGA 1 cut(s) 51
MflI RGATCY 2 cut(s) 241, 325
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 1 cut(s) 22
MnlI CCTC 9 cut(s) 50, 74, 167, 170, 188, 227, 371, 392, 397
Mph1103I ATGCAT 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 1 cut(s) 400
MslI CAYNNNNRTG 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 6 cut(s) 3, 202, 241, 301, 325, 371
NlaIII CATG 2 cut(s) 92, 202
NlaIV GGNNCC 2 cut(s) 169, 243
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 1 cut(s) 92
PctI GAATGC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 321, 343
PmaCI CACGTG 1 cut(s) 124
PmlI CACGTG 1 cut(s) 124
Ppu21I YACGTR 1 cut(s) 124
PshAI GACNNNNGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 237
PspCI CACGTG 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 169, 243
PsuI RGATCY 2 cut(s) 241, 325
RsaI GTAC 2 cut(s) 150, 169
RsaNI GTAC 2 cut(s) 149, 168
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 2 cut(s) 320, 342
Sau3AI GATC 6 cut(s) 3, 202, 241, 301, 325, 371
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 297
SetI ASST 5 cut(s) 126, 180, 300, 363, 384
SfaNI GCATC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 1 cut(s) 22
SsiI CCGC 2 cut(s) 171, 261
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 2 cut(s) 126, 300
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 22
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TseI GCWGC 2 cut(s) 319, 341
TspDTI ATGAA 1 cut(s) 187
VneI GTGCAC 1 cut(s) 293
XceI RCATGY 1 cut(s) 92
XmnI GAANNNNTTC 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.