RchiOBHm_Chr4g0403241

Mechanosensitive ion channel protein 10-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
22294269 .. 22298517
4249 bp
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UTR
Exon/CDS
Intron
PRQ37500

Sequence Viewer

Length: 216 bp
ATGCGAATCTCTGCCTTCTTCATCTCTATCAGAACGTGTGAGCACTCAAATTGTTACACTGATATTGGAAAGCTTCTGAAGATGAAGCTAGATGAGGTTTCAGCTAGGACCATGGAGGTATTGGTGGATGCTTTTTCTAGTTCTGCAGGGCTGTCCACCTTCTCCTATACTGAGTTGGACTATGAATGGGGTGAACAGAATAGAGATTGCCAGTGA

Protein Analysis

71

Amino Acids

8.14

Weight (kDa)

4.72

Isoelectric Point (pI)

8.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 35
AluBI AGCT 3 cut(s) 73, 88, 104
AluI AGCT 3 cut(s) 73, 88, 104
Alw21I GWGCWC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 45
BfaI CTAG 3 cut(s) 89, 105, 138
BfmI CTRYAG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmsI GCATC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 163
BspMAI CTGCAG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 1 cut(s) 112
CviJI RGCY 4 cut(s) 73, 88, 104, 151
CviKI_1 RGCY 4 cut(s) 73, 88, 104, 151
DdeI CTNAG 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 113, 168, 183
FatI CATG 1 cut(s) 111
FokI GGATG 1 cut(s) 140
FspBI CTAG 3 cut(s) 89, 105, 138
Hin1II CATG 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 6
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 156, 194
Hpy188I TCNGA 2 cut(s) 32, 78
Hpy8I GTNNAC 2 cut(s) 156, 194
HpyAV CCTTC 2 cut(s) 25, 169
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 1 cut(s) 115
LpnPI CCDG 1 cut(s) 132
LweI GCATC 1 cut(s) 118
MaeI CTAG 3 cut(s) 89, 105, 138
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 2 cut(s) 10, 91
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 2 cut(s) 88, 109
NcoI CCATGG 1 cut(s) 111
NlaIII CATG 1 cut(s) 115
PfeI GAWTC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 108
SduI GDGCHC 1 cut(s) 45
SetI ASST 7 cut(s) 38, 75, 90, 99, 106, 120, 161
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 144
SgeI CNNG 6 cut(s) 48, 101, 117, 124, 150, 159
SinI GGWCC 1 cut(s) 108
Sse9I AATT 1 cut(s) 49
SspMI CTAG 3 cut(s) 89, 105, 138
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 38
TasI AATT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 6
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 10, 98, 198
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 3 cut(s) 89, 105, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.