Cleavage site for pathogenic type III effector avirulence factor Avr
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0403241 RchiOBHm_Chr5g0028651 |
| rosa_laevigata | RLG00000013260 RLG00000034224 |
| rosa_roxburghii | Rroxscaffold_1G00002440 Rroxscaffold_3G00225880 Rroxscaffold_4G00299590 Rroxscaffold_7G00185090 |
| rosa_rugosa | Rorug03G0240800 Rorug04G0233800 Rorug05G0020300 Rorug05G0044200 Rorug05G0479100 Rorug06G0053500 Rorug07G0242200 |
| rosa_samantha | Rh2AG235100 Rh2BG257000 Rh4BG112100 Rh4CG280300 Rh5DG233000 Rh6AG271200 Rh6CG262100 |
| rosa_wichuraiana | Rw2G021950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 3 cut(s) | 16, 148, 193 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| AspS9I | GGNCC | 1 cut(s) | 162 |
| AvaII | GGWCC | 1 cut(s) | 162 |
| BbvI | GCAGC | 1 cut(s) | 38 |
| BccI | CCATC | 3 cut(s) | 64, 122, 152 |
| BceAI | ACGGC | 1 cut(s) | 138 |
| BciVI | GTATCC | 1 cut(s) | 44 |
| BfuI | GTATCC | 1 cut(s) | 44 |
| BisI | GCNGC | 1 cut(s) | 27 |
| BlsI | GCNGC | 1 cut(s) | 28 |
| Bme18I | GGWCC | 1 cut(s) | 162 |
| BmgT120I | GGNCC | 1 cut(s) | 162 |
| BmiI | GGNNCC | 1 cut(s) | 163 |
| BsaBI | GATNNNNATC | 1 cut(s) | 55 |
| Bse1I | ACTGG | 1 cut(s) | 85 |
| Bse8I | GATNNNNATC | 1 cut(s) | 55 |
| BseJI | GATNNNNATC | 1 cut(s) | 55 |
| BseNI | ACTGG | 1 cut(s) | 85 |
| BseXI | GCAGC | 1 cut(s) | 38 |
| BslFI | GGGAC | 2 cut(s) | 90, 151 |
| BsmFI | GGGAC | 2 cut(s) | 90, 151 |
| BspLI | GGNNCC | 1 cut(s) | 163 |
| BsrI | ACTGG | 1 cut(s) | 85 |
| Bst6I | CTCTTC | 1 cut(s) | 219 |
| BstC8I | GCNNGC | 1 cut(s) | 31 |
| BstV1I | GCAGC | 1 cut(s) | 38 |
| BsuI | GTATCC | 1 cut(s) | 44 |
| Cac8I | GCNNGC | 1 cut(s) | 31 |
| Cfr13I | GGNCC | 1 cut(s) | 162 |
| CviJI | RGCY | 4 cut(s) | 29, 33, 153, 214 |
| CviKI_1 | RGCY | 4 cut(s) | 29, 33, 153, 214 |
| Eam1104I | CTCTTC | 1 cut(s) | 219 |
| EarI | CTCTTC | 1 cut(s) | 219 |
| Eco47I | GGWCC | 1 cut(s) | 162 |
| EcoO109I | RGGNCCY | 1 cut(s) | 162 |
| FaiI | YATR | 7 cut(s) | 9, 95, 103, 119, 121, 143, 210 |
| FaqI | GGGAC | 2 cut(s) | 90, 151 |
| FauNDI | CATATG | 1 cut(s) | 119 |
| Fnu4HI | GCNGC | 1 cut(s) | 27 |
| Fsp4HI | GCNGC | 1 cut(s) | 27 |
| GluI | GCNGC | 1 cut(s) | 27 |
| HinfI | GANTC | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 1 cut(s) | 61 |
| HpyAV | CCTTC | 1 cut(s) | 65 |
| HpyCH4V | TGCA | 1 cut(s) | 126 |
| LpnPI | CCDG | 5 cut(s) | 43, 66, 123, 154, 178 |
| Lsp1109I | GCAGC | 1 cut(s) | 38 |
| MboII | GAAGA | 1 cut(s) | 30 |
| MluCI | AATT | 1 cut(s) | 62 |
| NdeI | CATATG | 1 cut(s) | 119 |
| NlaIV | GGNNCC | 1 cut(s) | 163 |
| PfeI | GAWTC | 1 cut(s) | 172 |
| PkrI | GCNGC | 1 cut(s) | 28 |
| PpuMI | RGGWCCY | 1 cut(s) | 162 |
| Psp5II | RGGWCCY | 1 cut(s) | 162 |
| PspN4I | GGNNCC | 1 cut(s) | 163 |
| PspPI | GGNCC | 1 cut(s) | 162 |
| PspPPI | RGGWCCY | 1 cut(s) | 162 |
| SatI | GCNGC | 1 cut(s) | 27 |
| Sau96I | GGNCC | 1 cut(s) | 162 |
| SgeI | CNNG | 7 cut(s) | 42, 93, 122, 146, 167, 177, 181 |
| SinI | GGWCC | 1 cut(s) | 162 |
| Sse9I | AATT | 1 cut(s) | 62 |
| TasI | AATT | 1 cut(s) | 62 |
| TfiI | GAWTC | 1 cut(s) | 172 |
| TseI | GCWGC | 1 cut(s) | 26 |
| TspGWI | ACGGA | 1 cut(s) | 63 |
| VpaK11BI | GGWCC | 1 cut(s) | 162 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |