Rroxscaffold_1G00002440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008908
Physical Location & Seq
Reverse (-)
2915600 .. 2915938
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002440.1

Sequence Viewer

Length: 339 bp
ATGAGGTTTCAGCTAGGACCATGGAGGTATTGGTGGGTGCTTTTTCTAGTTCTGCAGGGCTGTCCACCTTCTCTTATACTGAGTTGGACTATGAATGGGGTGAACAGAATAGAGATTGCCAGTAAGATGGATGCAACTGCTGCTGGTGAGAAATTTACCTTAATTATGCTTGTATTTAATGATATTCTGGTGACCTTTTCATATATGATCCTGGTTCCAAGTTATATACTTAACCTGCATTTGAGTAGGTACGTTGAGGAGGAGGACCTCATGAGGTTCATGATTGAGAAAGAGGTAGAAGTTGCATTTATGCTGATTGACGTAGCACAAACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

13.17

Weight (kDa)

5.02

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 251
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwI GGATC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 17, 265
AsuHPI GGTGA 3 cut(s) 112, 158, 202
AvaII GGWCC 2 cut(s) 17, 265
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 212
BfaI CTAG 2 cut(s) 14, 47
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 2 cut(s) 17, 265
BmgT120I GGNCC 2 cut(s) 17, 265
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 272, 275
BseXI GCAGC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 72
BspHI TCATGA 2 cut(s) 270, 279
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 243
CciI TCATGA 2 cut(s) 270, 279
Cfr13I GGNCC 2 cut(s) 17, 265
Csp6I GTAC 1 cut(s) 250
CviAII CATG 3 cut(s) 21, 271, 280
CviJI RGCY 2 cut(s) 13, 60
CviKI_1 RGCY 2 cut(s) 13, 60
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 17, 265
Eco91I GGTNACC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 265
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 24, 274, 283
FatI CATG 3 cut(s) 20, 270, 279
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 14, 47
GluI GCNGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 24, 274, 283
HphI GGTGA 3 cut(s) 112, 158, 202
Hpy166II GTNNAC 2 cut(s) 65, 103
Hpy188III TCNNGA 2 cut(s) 271, 280
Hpy8I GTNNAC 2 cut(s) 65, 103
HpyAV CCTTC 1 cut(s) 78
HpyCH4IV ACGT 2 cut(s) 252, 321
HpyCH4V TGCA 4 cut(s) 55, 134, 238, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 252, 321
Hsp92II CATG 3 cut(s) 24, 274, 283
Kzo9I GATC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 41, 129, 133, 173, 197, 224, 248
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 14, 47
MaeII ACGT 2 cut(s) 252, 321
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MluCI AATT 2 cut(s) 152, 162
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 7 cut(s) 18, 250, 253, 256, 267, 278, 286
MseI TTAA 3 cut(s) 161, 177, 231
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 140
NcoI CCATGG 1 cut(s) 20
NdeII GATC 1 cut(s) 207
NlaIII CATG 3 cut(s) 24, 274, 283
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 190
PagI TCATGA 2 cut(s) 270, 279
PkrI GCNGC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 17, 265
PspPPI RGGWCCY 1 cut(s) 265
PstI CTGCAG 1 cut(s) 57
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 161, 177, 231
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 207
Sau96I GGNCC 2 cut(s) 17, 265
ScrFI CCNGG 1 cut(s) 212
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 2 cut(s) 17, 265
Sse9I AATT 2 cut(s) 152, 162
SspMI CTAG 2 cut(s) 14, 47
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 20
TaiI ACGT 2 cut(s) 255, 324
TasI AATT 2 cut(s) 152, 162
Tru1I TTAA 3 cut(s) 161, 177, 231
Tru9I TTAA 3 cut(s) 161, 177, 231
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 3 cut(s) 107, 189, 268
VpaK11BI GGWCC 2 cut(s) 17, 265
XapI RAATTY 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XspI CTAG 2 cut(s) 14, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.