Ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0403241 RchiOBHm_Chr5g0028651 |
| rosa_laevigata | RLG00000013260 RLG00000034224 |
| rosa_roxburghii | Rroxscaffold_1G00002440 Rroxscaffold_3G00225880 Rroxscaffold_4G00299590 Rroxscaffold_7G00185090 |
| rosa_rugosa | Rorug03G0240800 Rorug04G0233800 Rorug05G0020300 Rorug05G0044200 Rorug05G0479100 Rorug06G0053500 Rorug07G0242200 |
| rosa_samantha | Rh2AG235100 Rh2BG257000 Rh4BG112100 Rh4CG280300 Rh5DG233000 Rh6AG271200 Rh6CG262100 |
| rosa_wichuraiana | Rw2G021950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 517 |
| Acc65I | GGTACC | 1 cut(s) | 839 |
| AccB1I | GGYRCC | 1 cut(s) | 839 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 589 |
| AccI | GTMKAC | 2 cut(s) | 49, 457 |
| AciI | CCGC | 2 cut(s) | 424, 480 |
| AclWI | GGATC | 2 cut(s) | 596, 609 |
| AcoI | YGGCCR | 1 cut(s) | 830 |
| AcsI | RAATTY | 3 cut(s) | 99, 128, 359 |
| AdeI | CACNNNGTG | 1 cut(s) | 495 |
| AfaI | GTAC | 3 cut(s) | 251, 347, 841 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 589 |
| AhlI | ACTAGT | 1 cut(s) | 314 |
| AjiI | CACGTC | 1 cut(s) | 805 |
| AjnI | CCWGG | 2 cut(s) | 193, 264 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 576, 608 |
| AluBI | AGCT | 1 cut(s) | 544 |
| AluI | AGCT | 1 cut(s) | 544 |
| Alw26I | GTCTC | 1 cut(s) | 423 |
| AlwI | GGATC | 2 cut(s) | 596, 609 |
| AoxI | GGCC | 2 cut(s) | 761, 830 |
| ApoI | RAATTY | 3 cut(s) | 99, 128, 359 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 739 |
| Asp718I | GGTACC | 1 cut(s) | 839 |
| AspLEI | GCGC | 1 cut(s) | 411 |
| AspS9I | GGNCC | 1 cut(s) | 580 |
| AsuC2I | CCSGG | 1 cut(s) | 462 |
| AvaII | GGWCC | 1 cut(s) | 580 |
| BalI | TGGCCA | 1 cut(s) | 832 |
| BamHI | GGATCC | 1 cut(s) | 601 |
| BanI | GGYRCC | 1 cut(s) | 839 |
| BbsI | GAAGAC | 1 cut(s) | 799 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 39, 66, 73, 100, 259, 293 |
| BciT130I | CCWGG | 2 cut(s) | 195, 266 |
| BciVI | GTATCC | 1 cut(s) | 699 |
| BcnI | CCSGG | 1 cut(s) | 462 |
| BcoDI | GTCTC | 1 cut(s) | 423 |
| BcuI | ACTAGT | 1 cut(s) | 314 |
| BfaI | CTAG | 2 cut(s) | 315, 850 |
| BfmI | CTRYAG | 2 cut(s) | 219, 372 |
| BfuAI | ACCTGC | 1 cut(s) | 517 |
| BfuI | GTATCC | 1 cut(s) | 699 |
| BglII | AGATCT | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 3 cut(s) | 195, 266, 462 |
| Bme18I | GGWCC | 1 cut(s) | 580 |
| BmgBI | CACGTC | 1 cut(s) | 805 |
| BmgT120I | GGNCC | 1 cut(s) | 580 |
| BmiI | GGNNCC | 3 cut(s) | 594, 603, 841 |
| BmrFI | CCNGG | 3 cut(s) | 195, 266, 462 |
| BpiI | GAAGAC | 1 cut(s) | 799 |
| BpuMI | CCSGG | 1 cut(s) | 462 |
| Bsa29I | ATCGAT | 1 cut(s) | 76 |
| BsaAI | YACGTR | 2 cut(s) | 345, 695 |
| BsaI | GGTCTC | 1 cut(s) | 423 |
| BsaJI | CCNNGG | 4 cut(s) | 123, 265, 412, 576 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 589 |
| Bse1I | ACTGG | 2 cut(s) | 257, 843 |
| BseBI | CCWGG | 2 cut(s) | 195, 266 |
| BseCI | ATCGAT | 1 cut(s) | 76 |
| BseDI | CCNNGG | 4 cut(s) | 123, 265, 412, 576 |
| BseGI | GGATG | 3 cut(s) | 185, 432, 645 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 589 |
| BseMII | CTCAG | 2 cut(s) | 144, 780 |
| BseNI | ACTGG | 2 cut(s) | 257, 843 |
| BshFI | GGCC | 2 cut(s) | 763, 832 |
| BshNI | GGYRCC | 1 cut(s) | 839 |
| BshVI | ATCGAT | 1 cut(s) | 76 |
| BsiSI | CCGG | 1 cut(s) | 462 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 589 |
| BsmAI | GTCTC | 1 cut(s) | 423 |
| BsmI | GAATGC | 2 cut(s) | 270, 401 |
| BsnI | GGCC | 2 cut(s) | 763, 832 |
| Bso31I | GGTCTC | 1 cut(s) | 423 |
| Bsp143I | GATC | 3 cut(s) | 13, 25, 601 |
| BspACI | CCGC | 2 cut(s) | 424, 480 |
| BspANI | GGCC | 2 cut(s) | 763, 832 |
| BspCNI | CTCAG | 2 cut(s) | 145, 781 |
| BspDI | ATCGAT | 1 cut(s) | 76 |
| BspLI | GGNNCC | 3 cut(s) | 594, 603, 841 |
| BspMAI | CTGCAG | 1 cut(s) | 376 |
| BspMI | ACCTGC | 1 cut(s) | 517 |
| BspPI | GGATC | 2 cut(s) | 596, 609 |
| BspT107I | GGYRCC | 1 cut(s) | 839 |
| BspTNI | GGTCTC | 1 cut(s) | 423 |
| BsrI | ACTGG | 2 cut(s) | 257, 843 |
| BssECI | CCNNGG | 4 cut(s) | 123, 265, 412, 576 |
| BssMI | GATC | 3 cut(s) | 13, 25, 601 |
| BssT1I | CCWWGG | 3 cut(s) | 123, 412, 576 |
| Bst2UI | CCWGG | 2 cut(s) | 195, 266 |
| Bst4CI | ACNGT | 4 cut(s) | 247, 291, 350, 828 |
| Bst6I | CTCTTC | 2 cut(s) | 154, 745 |
| BstBAI | YACGTR | 2 cut(s) | 345, 695 |
| BstC8I | GCNNGC | 1 cut(s) | 372 |
| BstDEI | CTNAG | 3 cut(s) | 153, 401, 789 |
| BstEII | GGTNACC | 1 cut(s) | 260 |
| BstF5I | GGATG | 3 cut(s) | 185, 432, 645 |
| BstHHI | GCGC | 1 cut(s) | 411 |
| BstKTI | GATC | 3 cut(s) | 16, 28, 604 |
| BstMAI | GTCTC | 1 cut(s) | 423 |
| BstMBI | GATC | 3 cut(s) | 13, 25, 601 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 620, 799 |
| BstNI | CCWGG | 2 cut(s) | 195, 266 |
| BstPI | GGTNACC | 1 cut(s) | 260 |
| BstSCI | CCNGG | 3 cut(s) | 193, 264, 460 |
| BstSFI | CTRYAG | 2 cut(s) | 219, 372 |
| BstSNI | TACGTA | 1 cut(s) | 345 |
| BstV2I | GAAGAC | 1 cut(s) | 799 |
| BstX2I | RGATCY | 2 cut(s) | 13, 601 |
| BstYI | RGATCY | 2 cut(s) | 13, 601 |
| Bsu15I | ATCGAT | 1 cut(s) | 76 |
| BsuI | GTATCC | 1 cut(s) | 699 |
| BsuRI | GGCC | 2 cut(s) | 763, 832 |
| BsuTUI | ATCGAT | 1 cut(s) | 76 |
| BtrI | CACGTC | 1 cut(s) | 805 |
| BtsCI | GGATG | 3 cut(s) | 185, 432, 645 |
| BtsIMutI | CAGTG | 2 cut(s) | 252, 833 |
| BveI | ACCTGC | 1 cut(s) | 517 |
| Cac8I | GCNNGC | 1 cut(s) | 372 |
| CfoI | GCGC | 1 cut(s) | 411 |
| Cfr13I | GGNCC | 1 cut(s) | 580 |
| ClaI | ATCGAT | 1 cut(s) | 76 |
| CsiI | ACCWGGT | 1 cut(s) | 193 |
| Csp6I | GTAC | 3 cut(s) | 250, 346, 840 |
| CviAII | CATG | 1 cut(s) | 715 |
| CviJI | RGCY | 7 cut(s) | 68, 370, 544, 646, 763, 793, 832 |
| CviKI_1 | RGCY | 7 cut(s) | 68, 370, 544, 646, 763, 793, 832 |
| CviQI | GTAC | 3 cut(s) | 250, 346, 840 |
| DdeI | CTNAG | 3 cut(s) | 153, 401, 789 |
| DpnI | GATC | 3 cut(s) | 15, 27, 603 |
| DpnII | GATC | 3 cut(s) | 13, 25, 601 |
| DraIII | CACNNNGTG | 1 cut(s) | 495 |
| EaeI | YGGCCR | 1 cut(s) | 830 |
| Eam1104I | CTCTTC | 2 cut(s) | 154, 745 |
| EarI | CTCTTC | 2 cut(s) | 154, 745 |
| Eco105I | TACGTA | 1 cut(s) | 345 |
| Eco130I | CCWWGG | 3 cut(s) | 123, 412, 576 |
| Eco31I | GGTCTC | 1 cut(s) | 423 |
| Eco32I | GATATC | 2 cut(s) | 485, 682 |
| Eco47I | GGWCC | 1 cut(s) | 580 |
| Eco91I | GGTNACC | 1 cut(s) | 260 |
| EcoO65I | GGTNACC | 1 cut(s) | 260 |
| EcoRI | GAATTC | 1 cut(s) | 99 |
| EcoRII | CCWGG | 2 cut(s) | 193, 264 |
| EcoRV | GATATC | 2 cut(s) | 485, 682 |
| EcoT14I | CCWWGG | 3 cut(s) | 123, 412, 576 |
| ErhI | CCWWGG | 3 cut(s) | 123, 412, 576 |
| FaeI | CATG | 1 cut(s) | 718 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 35, 724, 756 |
| FatI | CATG | 1 cut(s) | 714 |
| FauNDI | CATATG | 1 cut(s) | 798 |
| FblI | GTMKAC | 2 cut(s) | 49, 457 |
| FokI | GGATG | 3 cut(s) | 172, 439, 652 |
| FspBI | CTAG | 2 cut(s) | 315, 850 |
| GlaI | GCGC | 1 cut(s) | 410 |
| HaeIII | GGCC | 2 cut(s) | 763, 832 |
| HapII | CCGG | 1 cut(s) | 462 |
| HhaI | GCGC | 1 cut(s) | 411 |
| Hin1II | CATG | 1 cut(s) | 718 |
| Hin6I | GCGC | 1 cut(s) | 409 |
| HinP1I | GCGC | 1 cut(s) | 409 |
| HincII | GTYRAC | 2 cut(s) | 50, 458 |
| HindII | GTYRAC | 2 cut(s) | 50, 458 |
| HinfI | GANTC | 1 cut(s) | 119 |
| HpaII | CCGG | 1 cut(s) | 462 |
| Hpy166II | GTNNAC | 3 cut(s) | 50, 250, 458 |
| Hpy188I | TCNGA | 3 cut(s) | 154, 781, 790 |
| Hpy188III | TCNNGA | 5 cut(s) | 11, 20, 104, 189, 596 |
| Hpy8I | GTNNAC | 3 cut(s) | 50, 250, 458 |
| HpyAV | CCTTC | 1 cut(s) | 527 |
| HpyCH4III | ACNGT | 4 cut(s) | 247, 291, 350, 828 |
| HpyCH4IV | ACGT | 3 cut(s) | 344, 694, 804 |
| HpyCH4V | TGCA | 9 cut(s) | 60, 87, 139, 374, 432, 450, 720, 752, 802 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 620, 799 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 401, 789 |
| HpySE526I | ACGT | 3 cut(s) | 344, 694, 804 |
| Hsp92II | CATG | 1 cut(s) | 718 |
| HspAI | GCGC | 1 cut(s) | 409 |
| KpnI | GGTACC | 1 cut(s) | 843 |
| Kzo9I | GATC | 3 cut(s) | 13, 25, 601 |
| MabI | ACCWGGT | 1 cut(s) | 193 |
| MaeI | CTAG | 2 cut(s) | 315, 850 |
| MaeII | ACGT | 3 cut(s) | 344, 694, 804 |
| MaeIII | GTNAC | 4 cut(s) | 260, 350, 443, 536 |
| MalI | GATC | 3 cut(s) | 15, 27, 603 |
| MboI | GATC | 3 cut(s) | 13, 25, 601 |
| MboII | GAAGA | 5 cut(s) | 8, 125, 141, 732, 799 |
| MfeI | CAATTG | 1 cut(s) | 451 |
| MflI | RGATCY | 2 cut(s) | 13, 601 |
| MlsI | TGGCCA | 1 cut(s) | 832 |
| MluCI | AATT | 4 cut(s) | 99, 128, 359, 451 |
| MluNI | TGGCCA | 1 cut(s) | 832 |
| MlyI | GAGTC | 1 cut(s) | 113 |
| MmeI | TCCRAC | 1 cut(s) | 264 |
| MnlI | CCTC | 6 cut(s) | 433, 592, 670, 748, 753, 804 |
| Mox20I | TGGCCA | 1 cut(s) | 832 |
| MroXI | GAANNNNTTC | 1 cut(s) | 739 |
| MscI | TGGCCA | 1 cut(s) | 832 |
| MseI | TTAA | 1 cut(s) | 132 |
| MslI | CAYNNNNRTG | 2 cut(s) | 386, 713 |
| Msp20I | TGGCCA | 1 cut(s) | 832 |
| MspI | CCGG | 1 cut(s) | 462 |
| MspR9I | CCNGG | 3 cut(s) | 195, 266, 462 |
| MunI | CAATTG | 1 cut(s) | 451 |
| Mva1269I | GAATGC | 2 cut(s) | 270, 401 |
| MvaI | CCWGG | 2 cut(s) | 195, 266 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 620, 799 |
| NciI | CCSGG | 1 cut(s) | 462 |
| NdeI | CATATG | 1 cut(s) | 798 |
| NdeII | GATC | 3 cut(s) | 13, 25, 601 |
| NlaIII | CATG | 1 cut(s) | 718 |
| NlaIV | GGNNCC | 3 cut(s) | 594, 603, 841 |
| PctI | GAATGC | 2 cut(s) | 270, 401 |
| PdmI | GAANNNNTTC | 1 cut(s) | 739 |
| PflFI | GACNNNGTC | 1 cut(s) | 710 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 589 |
| PleI | GAGTC | 1 cut(s) | 113 |
| PpsI | GAGTC | 1 cut(s) | 113 |
| Ppu21I | YACGTR | 2 cut(s) | 345, 695 |
| Psp6I | CCWGG | 2 cut(s) | 193, 264 |
| PspEI | GGTNACC | 1 cut(s) | 260 |
| PspGI | CCWGG | 2 cut(s) | 193, 264 |
| PspN4I | GGNNCC | 3 cut(s) | 594, 603, 841 |
| PspPI | GGNCC | 1 cut(s) | 580 |
| PstI | CTGCAG | 1 cut(s) | 376 |
| PsuI | RGATCY | 2 cut(s) | 13, 601 |
| PsyI | GACNNNGTC | 1 cut(s) | 710 |
| RsaI | GTAC | 3 cut(s) | 251, 347, 841 |
| RsaNI | GTAC | 3 cut(s) | 250, 346, 840 |
| RseI | CAYNNNNRTG | 2 cut(s) | 386, 713 |
| SalI | GTCGAC | 2 cut(s) | 48, 456 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| Sau3AI | GATC | 3 cut(s) | 13, 25, 601 |
| Sau96I | GGNCC | 1 cut(s) | 580 |
| SchI | GAGTC | 1 cut(s) | 113 |
| ScrFI | CCNGG | 3 cut(s) | 195, 266, 462 |
| SexAI | ACCWGGT | 1 cut(s) | 193 |
| SfcI | CTRYAG | 2 cut(s) | 219, 372 |
| SinI | GGWCC | 1 cut(s) | 580 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 386, 713 |
| SnaBI | TACGTA | 1 cut(s) | 345 |
| SpeI | ACTAGT | 1 cut(s) | 314 |
| Sse9I | AATT | 4 cut(s) | 99, 128, 359, 451 |
| SsiI | CCGC | 2 cut(s) | 424, 480 |
| SspI | AATATT | 3 cut(s) | 144, 206, 588 |
| SspMI | CTAG | 2 cut(s) | 315, 850 |
| StyD4I | CCNGG | 3 cut(s) | 193, 264, 460 |
| StyI | CCWWGG | 3 cut(s) | 123, 412, 576 |
| TaaI | ACNGT | 4 cut(s) | 247, 291, 350, 828 |
| TaiI | ACGT | 3 cut(s) | 347, 697, 807 |
| TaqI | TCGA | 6 cut(s) | 49, 76, 438, 457, 560, 663 |
| TasI | AATT | 4 cut(s) | 99, 128, 359, 451 |
| TatI | WGTACW | 1 cut(s) | 249 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 2 cut(s) | 252, 833 |
| TspDTI | ATGAA | 5 cut(s) | 17, 62, 126, 563, 578 |
| TspRI | CASTG | 2 cut(s) | 252, 833 |
| Tth111I | GACNNNGTC | 1 cut(s) | 710 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 589 |
| VpaK11BI | GGWCC | 1 cut(s) | 580 |
| XapI | RAATTY | 3 cut(s) | 99, 128, 359 |
| XmiI | GTMKAC | 2 cut(s) | 49, 457 |
| XmnI | GAANNNNTTC | 1 cut(s) | 739 |
| XspI | CTAG | 2 cut(s) | 315, 850 |