Rorug06G0053500

calmodulin-binding family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008908
Physical Location & Seq
Reverse (-)
7414794 .. 7415117
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0053500.1

Sequence Viewer

Length: 324 bp
ATGCTCCGGCAACAGAGTTCCAAGTATACTGAGATGAAGAAAGAAAGTATTGCCTCAGAGGAGAAAATTGCCAACCTCAAGTCCAGGATTCAAAAGTTGGAAGCTTCTCTAGCCACAGAAAAGAGAAACAAGGCAAAGATTGATGAGGTTTTGGATTCCATCGAGACACAAATAATCACGGCCAGAGATGGATTGGTCTCAGACTTGGCACAAGTGTCTGCCATGGAGGGAACAACCCAAGCTGCTAACCTAGTAGCTCAACAACAGTCGGCGTGGAATAGCTTAAGGACTACTTTTACCAAGTTTGCACGATGTATATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.92

Weight (kDa)

9.17

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 180
AflII CTTAAG 1 cut(s) 283
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 4 cut(s) 104, 242, 257, 282
AluI AGCT 4 cut(s) 104, 242, 257, 282
Alw26I GTCTC 2 cut(s) 158, 202
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 167, 182
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 158, 202
BfaI CTAG 2 cut(s) 110, 251
BfrI CTTAAG 1 cut(s) 283
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 316
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 316
BseMII CTCAG 3 cut(s) 21, 69, 213
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 229
BshFI GGCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 7
BsmAI GTCTC 2 cut(s) 158, 202
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 202
Bsp19I CCATGG 1 cut(s) 222
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 3 cut(s) 22, 68, 212
BspTI CTTAAG 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 222
BssNAI GTATAC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 222
Bst1107I GTATAC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 283
BstDEI CTNAG 3 cut(s) 30, 55, 199
BstDSI CCRYGG 1 cut(s) 222
BstMAI GTCTC 2 cut(s) 158, 202
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 229
BstZ17I GTATAC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 222
CviAII CATG 1 cut(s) 223
CviJI RGCY 6 cut(s) 104, 113, 182, 242, 257, 282
CviKI_1 RGCY 6 cut(s) 104, 113, 182, 242, 257, 282
DdeI CTNAG 3 cut(s) 30, 55, 199
EaeI YGGCCR 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 226
FaiI YATR 3 cut(s) 27, 224, 317
FalI AAGNNNNNCTT 2 cut(s) 277, 309
FatI CATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 110, 251
GluI GCNGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 2 cut(s) 88, 155
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 2 cut(s) 58, 202
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 30, 55, 199
Hsp92II CATG 1 cut(s) 226
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 20, 70, 97, 196
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 2 cut(s) 110, 251
MboII GAAGA 1 cut(s) 49
MluCI AATT 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 5 cut(s) 52, 64, 86, 139, 220
MseI TTAA 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 283
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 110
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 1 cut(s) 226
PfeI GAWTC 2 cut(s) 88, 155
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 85
SetI ASST 7 cut(s) 78, 106, 150, 244, 252, 259, 284
SmlI CTYRAG 2 cut(s) 77, 283
SmoI CTYRAG 2 cut(s) 77, 283
Sse9I AATT 1 cut(s) 66
SspMI CTAG 2 cut(s) 110, 251
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 66
TfiI GAWTC 2 cut(s) 88, 155
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 50
Vha464I CTTAAG 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 26
XspI CTAG 2 cut(s) 110, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.