Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008908

Physical Location & Seq

Genomic Coordinates Reverse (-)

30644038 .. 30644376

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGTTTCAGCTAGGACCATGGAGGTATTGGTGGATGCTTTTTCTAGTTCTGCAGGGCTGTCCACCTTCTCCTATACTGAGTTGGACTATGAATGGGGTGAACAGAATAGAGATTGCCAGTGAGATGGATGCAACTGCTGCTGGTGAGAAATTTACCTTAATTATGCTTGTATTTAATGATATTCTGGTGACCTTTTCATATATGATCCTAGTTCCAAGTTATATACTTAACCTGCATTTGAGTAGGTACGTTGAGGAGGAGGACCTCATGAGGTTCATGATTGAGAAAGAGGTAGAAGTTGCATTTATGCTGATTGACGTAGCACAAACCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

112

Amino Acids

13.19

Weight (kDa)

4.7

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008908)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0403241 RchiOBHm_Chr5g0028651
rosa_laevigata	RLG00000013260 RLG00000034224
rosa_roxburghii	Rroxscaffold_1G00002440 Rroxscaffold_3G00225880 Rroxscaffold_4G00299590 Rroxscaffold_7G00185090
rosa_rugosa	Rorug03G0240800 Rorug04G0233800 Rorug05G0020300 Rorug05G0044200 Rorug05G0479100 Rorug06G0053500 Rorug07G0242200
rosa_samantha	Rh2AG235100 Rh2BG257000 Rh4BG112100 Rh4CG280300 Rh5DG233000 Rh6AG271200 Rh6CG262100
rosa_wichuraiana	Rw2G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	251
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AlwI	GGATC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	17, 265
AsuHPI	GGTGA	3 cut(s)	112, 158, 202
AvaII	GGWCC	2 cut(s)	17, 265
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	121
BfaI	CTAG	3 cut(s)	14, 47, 212
BfmI	CTRYAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	2 cut(s)	17, 265
BmgT120I	GGNCC	2 cut(s)	17, 265
BmsI	GCATC	2 cut(s)	27, 121
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	42, 136
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	2 cut(s)	272, 275
BseXI	GCAGC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	207
Bsp19I	CCATGG	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	72
BspHI	TCATGA	2 cut(s)	270, 279
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	20
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	42, 136
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	127
BstXI	CCANNNNNNTGG	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	42, 136
BtsIMutI	CAGTG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	243
CciI	TCATGA	2 cut(s)	270, 279
Cfr13I	GGNCC	2 cut(s)	17, 265
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	21, 271, 280
CviJI	RGCY	2 cut(s)	13, 60
CviKI_1	RGCY	2 cut(s)	13, 60
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	17, 265
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	3 cut(s)	24, 274, 283
FatI	CATG	3 cut(s)	20, 270, 279
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	2 cut(s)	49, 143
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	3 cut(s)	14, 47, 212
GluI	GCNGC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	24, 274, 283
HphI	GGTGA	3 cut(s)	112, 158, 202
Hpy166II	GTNNAC	2 cut(s)	65, 103
Hpy188III	TCNNGA	2 cut(s)	271, 280
Hpy8I	GTNNAC	2 cut(s)	65, 103
HpyAV	CCTTC	1 cut(s)	78
HpyCH4IV	ACGT	2 cut(s)	252, 321
HpyCH4V	TGCA	4 cut(s)	55, 134, 238, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	252, 321
Hsp92II	CATG	3 cut(s)	24, 274, 283
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	5 cut(s)	41, 129, 133, 173, 248
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	27, 121
MaeI	CTAG	3 cut(s)	14, 47, 212
MaeII	ACGT	2 cut(s)	252, 321
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MluCI	AATT	2 cut(s)	152, 162
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	7 cut(s)	18, 250, 253, 256, 267, 278, 286
MseI	TTAA	3 cut(s)	161, 177, 231
MwoI	GCNNNNNNNGC	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	3 cut(s)	24, 274, 283
NmuCI	GTSAC	1 cut(s)	190
PagI	TCATGA	2 cut(s)	270, 279
PkrI	GCNGC	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	17, 265
PspPPI	RGGWCCY	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	3 cut(s)	161, 177, 231
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	2 cut(s)	17, 265
SfaNI	GCATC	2 cut(s)	27, 121
SfcI	CTRYAG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	17, 265
Sse9I	AATT	2 cut(s)	152, 162
SspMI	CTAG	3 cut(s)	14, 47, 212
StyI	CCWWGG	1 cut(s)	20
TaiI	ACGT	2 cut(s)	255, 324
TasI	AATT	2 cut(s)	152, 162
Tru1I	TTAA	3 cut(s)	161, 177, 231
Tru9I	TTAA	3 cut(s)	161, 177, 231
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	107, 189, 268
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	17, 265
XapI	RAATTY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	3 cut(s)	14, 47, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.