Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008908

Physical Location & Seq

Genomic Coordinates Forward (+)

53700071 .. 53704398

Gene Structure 4328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTGTCAGCAATGCAACTTTGAGATTGAATTCTGTTGTGTTCTAGGCTTTAGGATTAAGATCAGAGTTCAAAAAATCTCATATCGGAATACATTGGCGCTCTCTTTCTCCTTTGTCAATTCAATCAGCCTCATTCGCTTAGGGTTGCTACACTTGGTTAAGAACACAGCGTCGAAGTACTTTGAGGTCAACGCAAATTTCGAAAGAGGAGGCGGAGGAGACCACAGTGGTGATTGGACGACCCAAATGATGATCCATTTGAGCTACGTCTACGAGCAAGGTTTCGTCACAAACCTACAATCTCGATGCAAATCTCTGCCTTCTTCATCTCTATCAGATGGATGCAACTGCTGCTGGTACGTTGAGGAGGAGGACCTCATGAGATTGGGTGGCACTGATGGCAATTCCCACTCTCGATCCAGCCTTTGTCTCTTCCTAATTCCAGAAAGAGTGGTATTTTTCTTTTATTCTCTACCGATTTACAATTTAGTTGTTTCCATGAACAATTATATTTGGTTGAAAGAACTGAAAATTGTTCAAGGTGCTTCAGGGGTCGAAGTGGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

189

Amino Acids

21.51

Weight (kDa)

6.41

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008908)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0403241 RchiOBHm_Chr5g0028651
rosa_laevigata	RLG00000013260 RLG00000034224
rosa_roxburghii	Rroxscaffold_1G00002440 Rroxscaffold_3G00225880 Rroxscaffold_4G00299590 Rroxscaffold_7G00185090
rosa_rugosa	Rorug03G0240800 Rorug04G0233800 Rorug05G0020300 Rorug05G0044200 Rorug05G0479100 Rorug06G0053500 Rorug07G0242200
rosa_samantha	Rh2AG235100 Rh2BG257000 Rh4BG112100 Rh4CG280300 Rh5DG233000 Rh6AG271200 Rh6CG262100
rosa_wichuraiana	Rw2G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	247, 411
AcsI	RAATTY	2 cut(s)	29, 196
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	179, 359
AgsI	TTSAA	5 cut(s)	29, 71, 123, 520, 539
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	213, 434
AlwI	GGATC	2 cut(s)	247, 411
ApeKI	GCWGC	1 cut(s)	351
ApoI	RAATTY	2 cut(s)	29, 196
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	2 cut(s)	332, 392
BcoDI	GTCTC	2 cut(s)	213, 434
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
BmcAI	AGTACT	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmsI	GCATC	2 cut(s)	296, 332
Bpu10I	CCTNAGC	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	201
BsaBI	GATNNNNATC	2 cut(s)	59, 310
BsaI	GGTCTC	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	17
Bse8I	GATNNNNATC	2 cut(s)	59, 310
BseGI	GGATG	1 cut(s)	347
BseJI	GATNNNNATC	2 cut(s)	59, 310
BseMI	GCAATG	1 cut(s)	17
BseRI	GAGGAG	4 cut(s)	222, 231, 380, 383
BseXI	GCAGC	1 cut(s)	338
BsmAI	GTCTC	2 cut(s)	213, 434
Bso31I	GGTCTC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	60, 252, 416
BspACI	CCGC	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	378
BspPI	GGATC	2 cut(s)	247, 411
BspT104I	TTCGAA	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	17
BssMI	GATC	3 cut(s)	60, 252, 416
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	3 cut(s)	63, 255, 419
BstMAI	GTCTC	2 cut(s)	213, 434
BstMBI	GATC	3 cut(s)	60, 252, 416
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 351, 399
BstV1I	GCAGC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	232, 393
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	178, 358
CviAII	CATG	2 cut(s)	379, 499
CviJI	RGCY	4 cut(s)	48, 129, 264, 423
CviKI_1	RGCY	4 cut(s)	48, 129, 264, 423
CviQI	GTAC	2 cut(s)	178, 358
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	3 cut(s)	62, 254, 418
DpnII	GATC	3 cut(s)	60, 252, 416
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	29
FaeI	CATG	2 cut(s)	382, 502
FaiI	YATR	4 cut(s)	82, 380, 500, 510
FalI	AAGNNNNNCTT	1 cut(s)	549
FatI	CATG	2 cut(s)	378, 498
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	352
FokI	GGATG	1 cut(s)	354
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	101
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	382, 502
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	190, 271
Hpy188I	TCNGA	3 cut(s)	65, 87, 337
Hpy188III	TCNNGA	4 cut(s)	303, 379, 414, 443
Hpy8I	GTNNAC	2 cut(s)	190, 271
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	267, 360
HpyCH4V	TGCA	3 cut(s)	15, 309, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 351, 399
HpyF3I	CTNAG	1 cut(s)	139
HpySE526I	ACGT	2 cut(s)	267, 360
Hsp92II	CATG	2 cut(s)	382, 502
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	60, 252, 416
LpnPI	CCDG	4 cut(s)	340, 433, 456, 534
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	296, 332
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	267, 360
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	62, 254, 418
MboI	GATC	3 cut(s)	60, 252, 416
MboII	GAAGA	2 cut(s)	315, 424
MluCI	AATT	8 cut(s)	29, 118, 196, 403, 438, 484, 505, 531
MnlI	CCTC	9 cut(s)	140, 178, 200, 203, 209, 358, 361, 364, 386
MseI	TTAA	3 cut(s)	57, 159, 568
MslI	CAYNNNNRTG	1 cut(s)	228
MwoI	GCNNNNNNNGC	3 cut(s)	135, 351, 399
NdeII	GATC	3 cut(s)	60, 252, 416
NlaIII	CATG	2 cut(s)	382, 502
NmuCI	GTSAC	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	228
PagI	TCATGA	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	353
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	373
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	2 cut(s)	179, 359
RsaNI	GTAC	2 cut(s)	178, 358
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	57, 159, 568
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	3 cut(s)	60, 252, 416
Sau96I	GGNCC	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	179
SetI	ASST	8 cut(s)	189, 266, 270, 283, 297, 363, 378, 544
SfaNI	GCATC	2 cut(s)	296, 332
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	8 cut(s)	29, 118, 196, 403, 438, 484, 505, 531
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	44
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	2 cut(s)	270, 363
TaqI	TCGA	5 cut(s)	173, 201, 304, 415, 555
TasI	AATT	8 cut(s)	29, 118, 196, 403, 438, 484, 505, 531
TatI	WGTACW	1 cut(s)	177
Tru1I	TTAA	3 cut(s)	57, 159, 568
Tru9I	TTAA	3 cut(s)	57, 159, 568
TscAI	CASTG	2 cut(s)	232, 400
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	351
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	315, 515
TspRI	CASTG	2 cut(s)	232, 400
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	2 cut(s)	29, 196
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	44
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.