Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008908

Physical Location & Seq

Genomic Coordinates Reverse (-)

1335395 .. 1336610

Gene Structure 1216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0020300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGACAGCGATTCAGGTGCTGTTTTCTTTCATATTCGTAGGGGTCACTGTGGTCATGATCATGTTGTATGATCAGACCCCATCAGTTGTAAGCGGTCCGGTCAAGTCACATGCGGCGATGGCGACTTTGAGAAAGGTGTTGCTGCTTCTCATGTTCCTCGTCTTACTGATGATCATGTCCTGCGTTTACAATGTTATGATGATCCAGAAGATCCACGACTATCTCTTTGAACTCACTCTCATGGGTTTCTTGGCATTCCTAGTTCTCTTGATAGACAAAGTACACAACTATAAAAAAGAACTTAGTAGTCAAAGAAAGGTGAACACAAGAAAACAGCCAGAGGTTGAAACGACGTTGTATGAAACGACTACATTGCGCAGAAGGCTCAGACAAGTAGAATCACAACTTGAGAAGGAGTTGAAAGAGAAGACTGTAGCGACCACAAGACTCAGAACCCTAGTCTCTAGACATGAGAAAGAGACCAAAGAGAGGATTCTATTAGACACAAGGCTCAAACAACTTGAATCTGAACTTGAGACGAAGAAAAAAGACGTTGGTGCTGCAGAAGCCAATAGTATTGCTCTAAGGAAACAATGTGACGGGCTTCTTTATGAGTATAATCGTTTGCTTGAGGAGAATGAATTTGTTAAAAACCAATTGCGGGTATGTGATTGGAGATTGTCTCATTCAGGTAGCAAGAAAAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

236

Amino Acids

27.49

Weight (kDa)

9.5

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bap31_Bap29_C	PF18035	171 - 212	3.2e-06	Bap31/Bap29 cytoplasmic coiled-coil domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008908)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0403241 RchiOBHm_Chr5g0028651
rosa_laevigata	RLG00000013260 RLG00000034224
rosa_roxburghii	Rroxscaffold_1G00002440 Rroxscaffold_3G00225880 Rroxscaffold_4G00299590 Rroxscaffold_7G00185090
rosa_rugosa	Rorug03G0240800 Rorug04G0233800 Rorug05G0020300 Rorug05G0044200 Rorug05G0479100 Rorug06G0053500 Rorug07G0242200
rosa_samantha	Rh2AG235100 Rh2BG257000 Rh4BG112100 Rh4CG280300 Rh5DG233000 Rh6AG271200 Rh6CG262100
rosa_wichuraiana	Rw2G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AciI	CCGC	3 cut(s)	93, 113, 661
AclWI	GGATC	2 cut(s)	196, 205
AcsI	RAATTY	2 cut(s)	641, 703
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	489, 661
AgsI	TTSAA	4 cut(s)	230, 347, 421, 524
Alw26I	GTCTC	4 cut(s)	466, 473, 530, 687
AlwI	GGATC	2 cut(s)	196, 205
AlwNI	CAGNNNCTG	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	142, 560
ApoI	RAATTY	2 cut(s)	641, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	129, 547
BccI	CCATC	2 cut(s)	88, 112
BcgI	CGANNNNNNTGC	3 cut(s)	32, 355, 389
BclI	TGATCA	3 cut(s)	57, 70, 171
BcoDI	GTCTC	4 cut(s)	466, 473, 530, 687
BfaI	CTAG	3 cut(s)	260, 458, 465
BfmI	CTRYAG	2 cut(s)	432, 561
BisI	GCNGC	3 cut(s)	114, 143, 561
BlsI	GCNGC	3 cut(s)	115, 144, 562
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	434
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
BpuEI	CTTGAG	3 cut(s)	428, 554, 650
BsaI	GGTCTC	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 661
Bse3DI	GCAATG	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	489, 661
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	2 cut(s)	400, 463
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	2 cut(s)	129, 547
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	489, 661
BsmAI	GTCTC	4 cut(s)	466, 473, 530, 687
BsmBI	CGTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	473
Bsp143I	GATC	5 cut(s)	57, 70, 171, 201, 210
BspACI	CCGC	3 cut(s)	93, 113, 661
BspCNI	CTCAG	2 cut(s)	399, 462
BspHI	TCATGA	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	2 cut(s)	196, 205
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	371
BssMI	GATC	5 cut(s)	57, 70, 171, 201, 210
Bst4CI	ACNGT	2 cut(s)	49, 433
BstDEI	CTNAG	4 cut(s)	302, 386, 449, 584
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	5 cut(s)	60, 73, 174, 204, 213
BstMAI	GTCTC	4 cut(s)	466, 473, 530, 687
BstMBI	GATC	5 cut(s)	57, 70, 171, 201, 210
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 382, 566
BstNSI	RCATGY	1 cut(s)	113
BstSFI	CTRYAG	2 cut(s)	432, 561
BstV1I	GCAGC	2 cut(s)	129, 547
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	19
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	95
CpoI	CGGWCCG	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	281
CspI	CGGWCCG	1 cut(s)	95
CviAII	CATG	7 cut(s)	55, 61, 110, 151, 175, 241, 470
CviJI	RGCY	5 cut(s)	337, 385, 511, 569, 604
CviKI_1	RGCY	5 cut(s)	337, 385, 511, 569, 604
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	4 cut(s)	302, 386, 449, 584
DpnI	GATC	5 cut(s)	59, 72, 173, 203, 212
DpnII	GATC	5 cut(s)	57, 70, 171, 201, 210
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	7 cut(s)	58, 64, 113, 154, 178, 244, 473
FatI	CATG	7 cut(s)	54, 60, 109, 150, 174, 240, 469
FauI	CCCGC	1 cut(s)	654
FbaI	TGATCA	3 cut(s)	57, 70, 171
Fnu4HI	GCNGC	3 cut(s)	114, 143, 561
Fsp4HI	GCNGC	3 cut(s)	114, 143, 561
FspBI	CTAG	3 cut(s)	260, 458, 465
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	114, 143, 561
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	7 cut(s)	58, 64, 113, 154, 178, 244, 473
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	10, 398, 447, 493, 524
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	3 cut(s)	187, 283, 322
Hpy188I	TCNGA	4 cut(s)	75, 389, 452, 529
Hpy188III	TCNNGA	4 cut(s)	55, 205, 268, 465
Hpy8I	GTNNAC	3 cut(s)	187, 283, 322
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	375, 406
HpyCH4III	ACNGT	2 cut(s)	49, 433
HpyCH4IV	ACGT	2 cut(s)	353, 552
HpyCH4V	TGCA	1 cut(s)	563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 382, 566
HpyF3I	CTNAG	4 cut(s)	302, 386, 449, 584
HpySE526I	ACGT	2 cut(s)	353, 552
Hsp92II	CATG	7 cut(s)	58, 64, 113, 154, 178, 244, 473
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	3 cut(s)	57, 70, 171
Kzo9I	GATC	5 cut(s)	57, 70, 171, 201, 210
LpnPI	CCDG	5 cut(s)	111, 193, 218, 351, 675
Lsp1109I	GCAGC	2 cut(s)	129, 547
MaeI	CTAG	3 cut(s)	260, 458, 465
MaeII	ACGT	2 cut(s)	353, 552
MaeIII	GTNAC	3 cut(s)	43, 105, 596
MalI	GATC	5 cut(s)	59, 72, 173, 203, 212
MboI	GATC	5 cut(s)	57, 70, 171, 201, 210
MboII	GAAGA	3 cut(s)	220, 439, 553
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	1 cut(s)	210
MluCI	AATT	3 cut(s)	641, 656, 703
MlyI	GAGTC	1 cut(s)	441
MnlI	CCTC	4 cut(s)	167, 334, 483, 625
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	2 cut(s)	59, 239
MspI	CCGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	656
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	119, 382, 566
NdeII	GATC	5 cut(s)	57, 70, 171, 201, 210
NlaIII	CATG	7 cut(s)	58, 64, 113, 154, 178, 244, 473
NmuCI	GTSAC	3 cut(s)	43, 105, 596
NsbI	TGCGCA	1 cut(s)	377
NspI	RCATGY	1 cut(s)	113
PagI	TCATGA	1 cut(s)	54
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	4 cut(s)	10, 398, 493, 524
PkrI	GCNGC	3 cut(s)	115, 144, 562
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	59, 239
Rsr2I	CGGWCCG	1 cut(s)	95
RsrII	CGGWCCG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	3 cut(s)	114, 143, 561
Sau3AI	GATC	5 cut(s)	57, 70, 171, 201, 210
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	441
SetI	ASST	7 cut(s)	18, 138, 321, 345, 356, 555, 694
SfcI	CTRYAG	2 cut(s)	432, 561
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	2 cut(s)	59, 239
SmlI	CTYRAG	3 cut(s)	407, 533, 629
SmoI	CTYRAG	3 cut(s)	407, 533, 629
Sse9I	AATT	3 cut(s)	641, 656, 703
SsiI	CCGC	3 cut(s)	93, 113, 661
SspMI	CTAG	3 cut(s)	260, 458, 465
TaaI	ACNGT	2 cut(s)	49, 433
TaiI	ACGT	2 cut(s)	356, 555
TasI	AATT	3 cut(s)	641, 656, 703
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	4 cut(s)	10, 398, 493, 524
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	3 cut(s)	43, 105, 596
TseI	GCWGC	2 cut(s)	142, 560
Tsp45I	GTSAC	3 cut(s)	43, 105, 596
TspDTI	ATGAA	3 cut(s)	19, 375, 654
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	2 cut(s)	641, 703
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	3 cut(s)	260, 458, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.