Rroxscaffold_3G00225880

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
9230785 .. 9231861
1077 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00225880.1

Sequence Viewer

Length: 222 bp
ATGCTTACTTCATTTCAAAACCTCATGAGTGCCTCCATTATTGACAGATACATCAGGAGAAGTCCATCACTATATGACAAATTGGAAGGTATACAAAATTTTGAATTTTCTGGGGCAATTCCTACTAGACCTGCACAGGATTTGGCATTTTCAGTTGCAAGGTTTATACAAAATGGCGGTTCTTTTGCCAACTACTACATGGTACTTATTGTGAGCCCCTGA

Protein Analysis

73

Amino Acids

8.23

Weight (kDa)

8.14

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 91
AciI CCGC 1 cut(s) 177
AcsI RAATTY 2 cut(s) 97, 104
AfaI GTAC 1 cut(s) 204
AgsI TTSAA 2 cut(s) 17, 104
ApoI RAATTY 2 cut(s) 97, 104
BanII GRGCYC 1 cut(s) 218
BccI CCATC 1 cut(s) 73
BfaI CTAG 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 218
BspACI CCGC 1 cut(s) 177
BspHI TCATGA 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 139
BssNAI GTATAC 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 92
BveI ACCTGC 1 cut(s) 139
CciI TCATGA 1 cut(s) 24
Csp6I GTAC 1 cut(s) 203
CviAII CATG 2 cut(s) 25, 199
CviJI RGCY 1 cut(s) 216
CviKI_1 RGCY 1 cut(s) 216
CviQI GTAC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 218
FaeI CATG 2 cut(s) 28, 202
FaiI YATR 6 cut(s) 26, 73, 75, 92, 167, 200
FatI CATG 2 cut(s) 24, 198
FblI GTMKAC 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 218
FspBI CTAG 1 cut(s) 126
Hin1II CATG 2 cut(s) 28, 202
Hpy166II GTNNAC 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 25, 55
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 134, 158
Hsp92II CATG 2 cut(s) 28, 202
LpnPI CCDG 4 cut(s) 40, 96, 122, 144
MaeI CTAG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 4 cut(s) 80, 97, 104, 117
MnlI CCTC 2 cut(s) 32, 43
NlaIII CATG 2 cut(s) 28, 202
PagI TCATGA 1 cut(s) 24
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 218
SetI ASST 4 cut(s) 24, 91, 133, 164
SgeI CNNG 8 cut(s) 37, 67, 123, 138, 143, 149, 171, 211
Sse9I AATT 4 cut(s) 80, 97, 104, 117
SsiI CCGC 1 cut(s) 177
SspMI CTAG 1 cut(s) 126
TasI AATT 4 cut(s) 80, 97, 104, 117
XapI RAATTY 2 cut(s) 97, 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 91
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.