Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008908

Physical Location & Seq

Genomic Coordinates Reverse (-)

27013243 .. 27013554

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG257000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTAATCTGGCTTTTTTCATCTTGTTTGCAAAACTGGTTTATCTTTTGTCTATTATTGCTTCCTGATACTCTACATGTAAGACCAGCCCAATATATTTTCCTTTTTCTGTGTCTTTTGACTCTTTTTGCTGTGTCTTTGCTGATTGAGATTGAGAGGCCAAAGAAGGCTAAGGCTGGAGGGGAGAAAGAATACGTTGATATGGGAAAGCTTCTGAAAATGAAGCTAGAAGAGGTTTCAGCTAGGACCATGGAGGTATTGGTCGATGCGGTTCCTCAGTTCCACAGGGCTATCCACCTTGTCCTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

103

Amino Acids

11.98

Weight (kDa)

7.74

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008908)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0403241 RchiOBHm_Chr5g0028651
rosa_laevigata	RLG00000013260 RLG00000034224
rosa_roxburghii	Rroxscaffold_1G00002440 Rroxscaffold_3G00225880 Rroxscaffold_4G00299590 Rroxscaffold_7G00185090
rosa_rugosa	Rorug03G0240800 Rorug04G0233800 Rorug05G0020300 Rorug05G0044200 Rorug05G0479100 Rorug06G0053500 Rorug07G0242200
rosa_samantha	Rh2AG235100 Rh2BG257000 Rh4BG112100 Rh4CG280300 Rh5DG233000 Rh6AG271200 Rh6CG262100
rosa_wichuraiana	Rw2G021950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	76
AluBI	AGCT	3 cut(s)	211, 226, 242
AluI	AGCT	3 cut(s)	211, 226, 242
AoxI	GGCC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	227, 243
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	171, 276
BstDSI	CCRYGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	2 cut(s)	77, 250
CviJI	RGCY	9 cut(s)	13, 89, 160, 170, 176, 211, 226, 242, 290
CviKI_1	RGCY	9 cut(s)	13, 89, 160, 170, 176, 211, 226, 242, 290
DdeI	CTNAG	2 cut(s)	171, 276
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	80, 253
FaiI	YATR	5 cut(s)	78, 96, 203, 251, 307
FatI	CATG	2 cut(s)	76, 249
FspBI	CTAG	2 cut(s)	227, 243
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	80, 253
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	171, 276
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	80, 253
LpnPI	CCDG	5 cut(s)	22, 78, 99, 162, 271
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	227, 243
MaeII	ACGT	1 cut(s)	195
MboII	GAAGA	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	150, 173, 226, 247, 285
MseI	TTAA	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	249
NlaIII	CATG	2 cut(s)	80, 253
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	1 cut(s)	80
PciI	ACATGT	1 cut(s)	76
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PscI	ACATGT	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	115
SetI	ASST	7 cut(s)	198, 213, 228, 237, 244, 258, 300
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	246
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	227, 243
StyI	CCWWGG	1 cut(s)	249
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	9, 236
VpaK11BI	GGWCC	1 cut(s)	246
XceI	RCATGY	1 cut(s)	80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XspI	CTAG	2 cut(s)	227, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.