Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

10948119 .. 10948673

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29622

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTTCTTCTCTCTCAGCTACTCCTCACTAAGGAAAGCTTTGAAAGTTGTAAAATTCAACTTTTTTTCATTGCGGAGGAGGATACGGATGCAGAGGGGCTCAAGGCTGATGTGAAGAAGTTTCTGTATGATCTTCGCATGCATGCAGAAGTCATTGTTGTAACAATGAAGTCGTGGGATATGCAAGCAGACAGTGGGGCTCCTCAAGATGAATCTGTGGAGGCTTATAATGCTGCTCAAAAGCGGATAGCTGATTACTTGGCTGAGATGAAGTCAACAGCTAAGAAACAAGGGACACCACTGATGGCGGATGGGAAACAGGTCGTCGTGAATGAGCAGCAGGTGGAGAAGTTTCTTTACACTACTCTGAAGTTGAATTCAACAATACTCAGATACTCGAGAATGGTTGCGGTCGTGCTCGTTAGCTTACCTCCTCCTCCAGTCAACCACCCAGCATACTTTTACATGGAATACATGGATTTGTTGGTGGAGAATGTGCCTAGACTTCTGATTGTGAAAGGATACCGTAGGGATGTTGTAACTCTATTCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

184

Amino Acids

20.99

Weight (kDa)

5.48

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC12	PF03522	2 - 183	2.4e-15	Solute carrier family 12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AciI	CCGC	4 cut(s)	74, 244, 308, 410
AcsI	RAATTY	2 cut(s)	54, 376
AcuI	CTGAAG	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	44, 59, 376, 381
AluBI	AGCT	5 cut(s)	19, 39, 251, 281, 426
AluI	AGCT	5 cut(s)	19, 39, 251, 281, 426
Alw21I	GWGCWC	1 cut(s)	420
Ama87I	CYCGRG	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	233, 337
ApoI	RAATTY	2 cut(s)	54, 376
AvaI	CYCGRG	1 cut(s)	397
BanII	GRGCYC	2 cut(s)	102, 202
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	220, 349
BccI	CCATC	2 cut(s)	298, 305
BciVI	GTATCC	2 cut(s)	76, 515
BfaI	CTAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	331
BfuI	GTATCC	2 cut(s)	76, 515
BisI	GCNGC	2 cut(s)	234, 338
BlsI	GCNGC	2 cut(s)	235, 339
BmeT110I	CYCGRG	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	86, 189
BsaAI	YACGTR	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	94, 316, 538
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	29, 255, 403
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	5 cut(s)	14, 92, 192, 423, 426
BseXI	GCAGC	2 cut(s)	220, 349
BseYI	CCCAGC	1 cut(s)	451
Bsh1285I	CGRYCG	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	397
Bsp1286I	GDGCHC	3 cut(s)	102, 202, 420
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	4 cut(s)	74, 244, 308, 410
BspCNI	CTCAG	3 cut(s)	28, 256, 402
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	440
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	194, 527
BstBAI	YACGTR	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	140, 144, 186
BstDEI	CTNAG	5 cut(s)	15, 30, 264, 282, 389
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	94, 316, 538
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	2 cut(s)	142, 146
BstV1I	GCAGC	2 cut(s)	220, 349
BsuI	GTATCC	2 cut(s)	76, 515
BtsCI	GGATG	3 cut(s)	94, 316, 538
BtsIMutI	CAGTG	2 cut(s)	199, 299
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	3 cut(s)	140, 144, 186
CviAII	CATG	4 cut(s)	139, 143, 466, 475
DdeI	CTNAG	5 cut(s)	15, 30, 264, 282, 389
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	102, 202
Eco57I	CTGAAG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	102, 202
FaeI	CATG	4 cut(s)	142, 146, 469, 478
FaiI	YATR	8 cut(s)	129, 140, 144, 182, 228, 457, 467, 476
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	138, 142, 465, 474
Fnu4HI	GCNGC	2 cut(s)	234, 338
FokI	GGATG	3 cut(s)	101, 323, 545
FriOI	GRGCYC	2 cut(s)	102, 202
Fsp4HI	GCNGC	2 cut(s)	234, 338
FspBI	CTAG	1 cut(s)	501
GluI	GCNGC	2 cut(s)	234, 338
GsaI	CCCAGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	423
Hin1II	CATG	4 cut(s)	142, 146, 469, 478
HincII	GTYRAC	2 cut(s)	276, 445
HindII	GTYRAC	2 cut(s)	276, 445
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	276, 445
Hpy188I	TCNGA	3 cut(s)	369, 392, 510
Hpy188III	TCNNGA	3 cut(s)	206, 328, 399
Hpy8I	GTNNAC	2 cut(s)	276, 445
Hpy99I	CGWCG	1 cut(s)	329
HpyCH4III	ACNGT	2 cut(s)	194, 527
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	4 cut(s)	92, 142, 146, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	5 cut(s)	15, 30, 264, 282, 389
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	4 cut(s)	142, 146, 469, 478
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	305, 326, 453, 465
Lsp1109I	GCAGC	2 cut(s)	220, 349
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	160, 538
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	125, 127
MhlI	GDGCHC	3 cut(s)	102, 202, 420
MluCI	AATT	2 cut(s)	54, 376
MnlI	CCTC	9 cut(s)	35, 70, 73, 88, 213, 214, 441, 444, 447
Mph1103I	ATGCAT	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	142, 146, 469, 478
NlaIV	GGNNCC	1 cut(s)	201
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	2 cut(s)	142, 146
PaeI	GCATGC	2 cut(s)	142, 146
PaeR7I	CTCGAG	1 cut(s)	397
PaqCI	CACCTGC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	235, 339
Ppu21I	YACGTR	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	201
SatI	GCNGC	2 cut(s)	234, 338
Sau3AI	GATC	1 cut(s)	130
SduI	GDGCHC	3 cut(s)	102, 202, 420
SetI	ASST	9 cut(s)	21, 41, 253, 283, 324, 345, 428, 433, 554
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	397
SmlI	CTYRAG	3 cut(s)	101, 204, 397
SmoI	CTYRAG	3 cut(s)	101, 204, 397
SphI	GCATGC	2 cut(s)	142, 146
Sse9I	AATT	2 cut(s)	54, 376
SsiI	CCGC	4 cut(s)	74, 244, 308, 410
SspMI	CTAG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	194, 527
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	1 cut(s)	398
TasI	AATT	2 cut(s)	54, 376
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	2 cut(s)	199, 306
TseI	GCWGC	2 cut(s)	233, 337
TspDTI	ATGAA	4 cut(s)	58, 182, 225, 284
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	199, 306
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	2 cut(s)	54, 376
XceI	RCATGY	2 cut(s)	142, 146
XhoI	CTCGAG	1 cut(s)	397
XspI	CTAG	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.