Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016973.1

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 5952

Gene Structure 5951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016973.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1123 bp

atgggcaggaacataaaagtgagctctgaggagatccttggctctaacataaaagaagggtcctctgctagtcatgtgcaagccaacggcccccagaaagaatccaaattggaactctttggctttgattctcttgtcaatattcttggtcttaagagtatgacagatgagcaagctgcagcaccatctagtcctagagatggtgaaaatattgctatcacccatggaagaccgaaggatactgccgtcaaatcgggtacattgatgggtgtatttgtcccatgcctgcaaaacatattgggaattatctactacatccgtttttcttggatcgttggtatggctggcatagctgattcactgttggtggttacattatgtggcacatgtactttcctgactggaatatcattgagtgccattgcaaccaatggtgctatgaagggaggtggaccatactatctaattggtcgtgcgcttggtccagaagttggagttagcattgggttatgtttctttcttggaaatgctgttgctggagctctttatgtcttgggagctgtggaaaccttcttgaaagctctgccaggcgctgggtttttcagtgaaacaacaacagttaatgacttaaagactttaaatctgagtgtgcatgatttgcaaatctatgggataattgtgaccatcctattgtgctttattgtgtttgggggagtgaaaataatcaataaggttgcacctgctttcctcatacccgttctattgtcgatgctctgcatctatatcgggattgctctggcaaggaaggattaccctacaaagggagtcacgggctttagttttaatacgttcaaagataactggaaatcggattatcagaagactactagcggtggagttcctgaccctgacggagctgtctcctgggacttcaatgcaatggtcggtctctttttccctgccgtgacaggaataatggcaggttcaaatcgatcagcctcactgaaagacactcagcggtcaattcctattggaacattggctgcaactcttgcaactactgttatgtacctgatctctgtgttagtatttggaggacttgccaccagacatttgcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

374

Amino Acids

39.41

Weight (kDa)

8.44

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	748
AasI	GACNNNNNNGTC	1 cut(s)	917
Acc36I	ACCTGC	2 cut(s)	748, 971
AccB7I	CCANNNNNTGG	2 cut(s)	491, 593
AciI	CCGC	2 cut(s)	891, 1018
AclWI	GGATC	2 cut(s)	28, 338
AfaI	GTAC	3 cut(s)	259, 391, 1070
AfiI	CCNNNNNNNGG	5 cut(s)	200, 491, 593, 820, 821
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	577, 853, 934, 987
AjnI	CCWGG	2 cut(s)	586, 923
AluBI	AGCT	7 cut(s)	24, 176, 353, 542, 560, 581, 917
AluI	AGCT	7 cut(s)	24, 176, 353, 542, 560, 581, 917
Alw21I	GWGCWC	2 cut(s)	26, 544
Alw26I	GTCTC	2 cut(s)	925, 953
AlwI	GGATC	2 cut(s)	28, 338
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	176, 179, 1043
AspLEI	GCGC	2 cut(s)	478, 593
AspS9I	GGNCC	4 cut(s)	60, 89, 452, 482
AsuHPI	GGTGA	2 cut(s)	211, 215
AvaII	GGWCC	3 cut(s)	60, 452, 482
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BanII	GRGCYC	2 cut(s)	26, 544
BbsI	GAAGAC	2 cut(s)	235, 887
Bbv12I	GWGCWC	2 cut(s)	26, 544
BbvI	GCAGC	3 cut(s)	163, 191, 1030
BccI	CCATC	4 cut(s)	193, 194, 259, 692
BceAI	ACGGC	3 cut(s)	103, 230, 947
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BciT130I	CCWGG	2 cut(s)	588, 925
BciVI	GTATCC	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	925, 953
BfaI	CTAG	4 cut(s)	69, 189, 195, 888
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	594
BfrI	CTTAAG	1 cut(s)	152
BfuAI	ACCTGC	2 cut(s)	748, 971
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	3 cut(s)	177, 180, 1044
BlsI	GCNGC	3 cut(s)	178, 181, 1045
Bme1390I	CCNGG	2 cut(s)	588, 925
Bme18I	GGWCC	3 cut(s)	60, 452, 482
BmgT120I	GGNCC	4 cut(s)	60, 89, 452, 482
BmiI	GGNNCC	2 cut(s)	61, 91
BmrFI	CCNGG	2 cut(s)	588, 925
BmsI	GCATC	2 cut(s)	759, 786
BpiI	GAAGAC	2 cut(s)	235, 887
BpmI	CTGGAG	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	991
BsaI	GGTCTC	1 cut(s)	953
BsaJI	CCNNGG	3 cut(s)	37, 223, 924
Bsc4I	CCNNNNNNNGG	5 cut(s)	200, 491, 593, 820, 821
Bse1I	ACTGG	2 cut(s)	406, 866
Bse3DI	GCAATG	2 cut(s)	420, 945
BseBI	CCWGG	2 cut(s)	588, 925
BseCI	ATCGAT	1 cut(s)	991
BseDI	CCNNGG	3 cut(s)	37, 223, 924
BseGI	GGATG	2 cut(s)	315, 684
BseLI	CCNNNNNNNGG	5 cut(s)	200, 491, 593, 820, 821
BseMI	GCAATG	2 cut(s)	420, 945
BseMII	CTCAG	3 cut(s)	18, 635, 1028
BseNI	ACTGG	2 cut(s)	406, 866
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	3 cut(s)	163, 191, 1030
BseYI	CCCAGC	1 cut(s)	593
BshFI	GGCC	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	991
BsiHKAI	GWGCWC	2 cut(s)	26, 544
BslFI	GGGAC	2 cut(s)	263, 941
BslI	CCNNNNNNNGG	5 cut(s)	200, 491, 593, 820, 821
BsmAI	GTCTC	2 cut(s)	925, 953
BsmFI	GGGAC	2 cut(s)	263, 941
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	953
Bsp1286I	GDGCHC	2 cut(s)	26, 544
Bsp143I	GATC	4 cut(s)	33, 330, 992, 1074
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	2 cut(s)	891, 1018
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	3 cut(s)	19, 636, 1027
BspDI	ATCGAT	1 cut(s)	991
BspLI	GGNNCC	2 cut(s)	61, 91
BspMAI	CTGCAG	1 cut(s)	181
BspMI	ACCTGC	2 cut(s)	748, 971
BspPI	GGATC	2 cut(s)	28, 338
BspTI	CTTAAG	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	953
BsrDI	GCAATG	2 cut(s)	420, 945
BsrI	ACTGG	2 cut(s)	406, 866
BssECI	CCNNGG	3 cut(s)	37, 223, 924
BssMI	GATC	4 cut(s)	33, 330, 992, 1074
BssT1I	CCWWGG	2 cut(s)	37, 223
Bst2UI	CCWGG	2 cut(s)	588, 925
Bst4CI	ACNGT	3 cut(s)	363, 619, 1063
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	2 cut(s)	658, 1052
BstC8I	GCNNGC	4 cut(s)	81, 174, 287, 346
BstDEI	CTNAG	3 cut(s)	27, 644, 1014
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	315, 684
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	478, 593
BstKTI	GATC	4 cut(s)	36, 333, 995, 1077
BstMAI	GTCTC	2 cut(s)	925, 953
BstMBI	GATC	4 cut(s)	33, 330, 992, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 658, 1052
BstNI	CCWGG	2 cut(s)	588, 925
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	586, 923
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	163, 191, 1030
BstV2I	GAAGAC	2 cut(s)	235, 887
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	991
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	90
BsuTUI	ATCGAT	1 cut(s)	991
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	315, 684
BtsIMutI	CAGTG	3 cut(s)	359, 610, 1001
BveI	ACCTGC	2 cut(s)	748, 971
Cac8I	GCNNGC	4 cut(s)	81, 174, 287, 346
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	2 cut(s)	478, 593
Cfr13I	GGNCC	4 cut(s)	60, 89, 452, 482
ClaI	ATCGAT	1 cut(s)	991
Csp6I	GTAC	3 cut(s)	258, 390, 1069
CviAII	CATG	5 cut(s)	74, 224, 282, 387, 653
CviQI	GTAC	3 cut(s)	258, 390, 1069
DdeI	CTNAG	3 cut(s)	27, 644, 1014
DpnI	GATC	4 cut(s)	35, 332, 994, 1076
DpnII	GATC	4 cut(s)	33, 330, 992, 1074
DraI	TTTAAA	1 cut(s)	639
DrdI	GACNNNNNNGTC	1 cut(s)	917
DseDI	GACNNNNNNGTC	1 cut(s)	917
Ecl136II	GAGCTC	2 cut(s)	24, 542
Eco130I	CCWWGG	2 cut(s)	37, 223
Eco24I	GRGCYC	2 cut(s)	26, 544
Eco31I	GGTCTC	1 cut(s)	953
Eco47I	GGWCC	3 cut(s)	60, 452, 482
Eco53kI	GAGCTC	2 cut(s)	24, 542
EcoICRI	GAGCTC	2 cut(s)	24, 542
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	586, 923
EcoT14I	CCWWGG	2 cut(s)	37, 223
EcoT38I	GRGCYC	2 cut(s)	26, 544
ErhI	CCWWGG	2 cut(s)	37, 223
FaeI	CATG	5 cut(s)	77, 227, 285, 390, 656
FaqI	GGGAC	2 cut(s)	263, 941
FatI	CATG	5 cut(s)	73, 223, 281, 386, 652
Fnu4HI	GCNGC	3 cut(s)	177, 180, 1044
FokI	GGATG	2 cut(s)	302, 671
FriOI	GRGCYC	2 cut(s)	26, 544
Fsp4HI	GCNGC	3 cut(s)	177, 180, 1044
FspBI	CTAG	4 cut(s)	69, 189, 195, 888
GlaI	GCGC	2 cut(s)	477, 592
GluI	GCNGC	3 cut(s)	177, 180, 1044
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	558
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	90
HhaI	GCGC	2 cut(s)	478, 593
Hin1II	CATG	5 cut(s)	77, 227, 285, 390, 656
Hin6I	GCGC	2 cut(s)	476, 591
HinP1I	GCGC	2 cut(s)	476, 591
HinfI	GANTC	4 cut(s)	101, 128, 356, 825
HphI	GGTGA	2 cut(s)	211, 215
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	4 cut(s)	28, 645, 871, 879
Hpy188III	TCNNGA	5 cut(s)	397, 485, 574, 787, 902
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	5 cut(s)	50, 229, 436, 580, 799
HpyCH4III	ACNGT	3 cut(s)	363, 619, 1063
HpyCH4IV	ACGT	1 cut(s)	848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 658, 1052
HpyF3I	CTNAG	3 cut(s)	27, 644, 1014
HpySE526I	ACGT	1 cut(s)	848
Hsp92II	CATG	5 cut(s)	77, 227, 285, 390, 656
HspAI	GCGC	2 cut(s)	476, 591
Kzo9I	GATC	4 cut(s)	33, 330, 992, 1074
LmnI	GCTCC	3 cut(s)	539, 557, 914
Lsp1109I	GCAGC	3 cut(s)	163, 191, 1030
LweI	GCATC	2 cut(s)	759, 786
MaeI	CTAG	4 cut(s)	69, 189, 195, 888
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	4 cut(s)	370, 679, 826, 964
MalI	GATC	4 cut(s)	35, 332, 994, 1076
MboI	GATC	4 cut(s)	33, 330, 992, 1074
MboII	GAAGA	2 cut(s)	240, 892
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	26, 544
MluCI	AATT	5 cut(s)	107, 303, 465, 675, 1023
MlyI	GAGTC	1 cut(s)	834
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	6 cut(s)	22, 73, 440, 758, 1009, 1088
MseI	TTAA	5 cut(s)	153, 621, 629, 638, 843
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	1018
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	588, 925
MvaI	CCWGG	2 cut(s)	588, 925
MwoI	GCNNNNNNNGC	3 cut(s)	350, 658, 1052
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	33, 330, 992, 1074
NlaIII	CATG	5 cut(s)	77, 227, 285, 390, 656
NlaIV	GGNNCC	2 cut(s)	61, 91
NmuCI	GTSAC	3 cut(s)	679, 826, 964
NspI	RCATGY	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	748
PciI	ACATGT	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	101, 128, 356
PflMI	CCANNNNNTGG	2 cut(s)	491, 593
PkrI	GCNGC	3 cut(s)	178, 181, 1045
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
PpuMI	RGGWCCY	1 cut(s)	60
PscI	ACATGT	1 cut(s)	386
Psp124BI	GAGCTC	2 cut(s)	26, 544
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	586, 923
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	2 cut(s)	586, 923
PspN4I	GGNNCC	2 cut(s)	61, 91
PspPI	GGNCC	4 cut(s)	60, 89, 452, 482
PspPPI	RGGWCCY	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	3 cut(s)	259, 391, 1070
RsaNI	GTAC	3 cut(s)	258, 390, 1069
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	2 cut(s)	26, 544
SaqAI	TTAA	5 cut(s)	153, 621, 629, 638, 843
SatI	GCNGC	3 cut(s)	177, 180, 1044
Sau3AI	GATC	4 cut(s)	33, 330, 992, 1074
Sau96I	GGNCC	4 cut(s)	60, 89, 452, 482
SchI	GAGTC	1 cut(s)	834
ScrFI	CCNGG	2 cut(s)	588, 925
SduI	GDGCHC	2 cut(s)	26, 544
SfaNI	GCATC	2 cut(s)	759, 786
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	3 cut(s)	60, 452, 482
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	107, 303, 465, 675, 1023
SsiI	CCGC	2 cut(s)	891, 1018
SspI	AATATT	2 cut(s)	142, 211
SspMI	CTAG	4 cut(s)	69, 189, 195, 888
SstI	GAGCTC	2 cut(s)	26, 544
StyD4I	CCNGG	2 cut(s)	586, 923
StyI	CCWWGG	2 cut(s)	37, 223
TaaI	ACNGT	3 cut(s)	363, 619, 1063
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	2 cut(s)	767, 991
TaqII	GACCGA	2 cut(s)	247, 935
TasI	AATT	5 cut(s)	107, 303, 465, 675, 1023
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	101, 128, 356
Tru1I	TTAA	5 cut(s)	153, 621, 629, 638, 843
Tru9I	TTAA	5 cut(s)	153, 621, 629, 638, 843
TscAI	CASTG	3 cut(s)	366, 610, 1008
TseFI	GTSAC	3 cut(s)	679, 826, 964
TseI	GCWGC	3 cut(s)	176, 179, 1043
Tsp45I	GTSAC	3 cut(s)	679, 826, 964
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	2 cut(s)	308, 927
TspRI	CASTG	3 cut(s)	366, 610, 1008
Van91I	CCANNNNNTGG	2 cut(s)	491, 593
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	3 cut(s)	60, 452, 482
XceI	RCATGY	1 cut(s)	390
XspI	CTAG	4 cut(s)	69, 189, 195, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.