Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

10920646 .. 10920969

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG120900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTTCTTCTCTCTCAGCTACTCCTCACTAAGGAAAGCTTTGAAAGTTGTAAAATTCAAGTTTTCTGCATTGCGGAGGAGGATACTGATGCAGAGGGGCTCAAGGCTGATGTGAAGAAGTTTCTGTATGATCTTCGCATGCATGCAGAAGTCATTGTTGTAACAATGAAGTCATGGGATATGCAAGAAAACAGTGGGGCTCCTCAAGATGAATATGTGGAGGCTTATAATGCTGCTCAAAGGCGGATAGCTGATTACCTGGCTGAGATGAAGTCAACAACTAAGAAACAGGGGACACCATTGATGGCGGATGGAAACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

107

Amino Acids

12.16

Weight (kDa)

4.84

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC12	PF03522	2 - 85	4.6e-06	Solute carrier family 12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AciI	CCGC	3 cut(s)	74, 244, 308
AcsI	RAATTY	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	44, 59
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	3 cut(s)	19, 39, 251
AluI	AGCT	3 cut(s)	19, 39, 251
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	54
BanII	GRGCYC	2 cut(s)	102, 202
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	298, 305
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	79
BpuEI	CTTGAG	2 cut(s)	86, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	29, 255
BseRI	GAGGAG	3 cut(s)	14, 92, 192
BseXI	GCAGC	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	102, 202
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	3 cut(s)	74, 244, 308
BspCNI	CTCAG	2 cut(s)	28, 256
BspLI	GGNNCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	69
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	140, 144
BstDEI	CTNAG	4 cut(s)	15, 30, 264, 282
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	2 cut(s)	142, 146
BstSCI	CCNGG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	140, 144
CviAII	CATG	3 cut(s)	139, 143, 174
CviJI	RGCY	8 cut(s)	19, 39, 100, 107, 200, 224, 251, 263
CviKI_1	RGCY	8 cut(s)	19, 39, 100, 107, 200, 224, 251, 263
DdeI	CTNAG	4 cut(s)	15, 30, 264, 282
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EciI	GGCGGA	2 cut(s)	259, 323
Eco24I	GRGCYC	2 cut(s)	102, 202
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	102, 202
FaeI	CATG	3 cut(s)	142, 146, 177
FaiI	YATR	7 cut(s)	129, 140, 144, 175, 182, 216, 228
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	138, 142, 173
Fnu4HI	GCNGC	1 cut(s)	234
FriOI	GRGCYC	2 cut(s)	102, 202
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	142, 146, 177
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	5 cut(s)	69, 92, 142, 146, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	4 cut(s)	15, 30, 264, 282
Hsp92II	CATG	3 cut(s)	142, 146, 177
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	245, 272, 275, 304
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	125, 127
MhlI	GDGCHC	2 cut(s)	102, 202
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	6 cut(s)	35, 70, 73, 88, 213, 214
Mph1103I	ATGCAT	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	142, 146, 177
NlaIV	GGNNCC	1 cut(s)	201
NsiI	ATGCAT	1 cut(s)	144
NspI	RCATGY	2 cut(s)	142, 146
PaeI	GCATGC	2 cut(s)	142, 146
PkrI	GCNGC	1 cut(s)	235
PsiI	TTATAA	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	102, 202
SetI	ASST	5 cut(s)	21, 41, 253, 261, 323
SfaNI	GCATC	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	101, 204
SmoI	CTYRAG	2 cut(s)	101, 204
SphI	GCATGC	2 cut(s)	142, 146
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	3 cut(s)	74, 244, 308
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	194
TasI	AATT	1 cut(s)	54
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	182, 225, 284
TspRI	CASTG	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	2 cut(s)	142, 146
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.