Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

11119579 .. 11121096

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG133000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTACCTTATTGATTGTTTTATTGATGAAACCAAGGTTTCTGTTGCAGGTGCTGCTCTTCAAAGCCTGACTGGTGCTCCCCGTCTGCTTGCTGCGATAGCCAATGATGATTTCTTACCAGTTCTTAACTACTTCAAGGTTGCAGATGGGAGTGAACCTCACTTTGCTAGTAACGCATTCCTTTGTATTGCGTGTGTTATAATTGGGAACCTGGATCTTATCACACCAACTATAACTATGTTTTTCCTTCTGTGTTATGCCGGTGTGAACTTATCTTGCTTCCTTCTGGATCTCCTAGATGCTCCCAGCTGGCGTCCTCGGTGGAAATTCCACCATTGGAGCCTCTCTCTTCTTGGAGCTTCACTATGTATAGTGATTATGTTCTTGATCTCTTGGGCATTCACTATAGTGTCGCTAGCCCTTGCAAGCCTTATATATTATTATGTGAGCATCAAAGGAAAGGCTGGCGACTGGGGTGATGGTTTCAAGAGCGCATATTTTCAGCTAGCTCTCCGAAGTCTTCGATCGCTAGGAGCAAACCAAGTGCACCCAAAGAATTGGTATCCCATCCCCCTGATATTCTGCCGGCCTTGGGGGAAGCTGCCAGAGAATGTACCCTCCCATCCCAAAATTGCCGACTTCGCCAACTGCATGAAGAAGAAGGGCAGGGGAATGTCTATCTTTGTGTCTATTCTAGACGGTGATTACCATGAATGTGTTGAAGATGCCAAGGCTGCCTGCAAGCAGCTTGATGCTTACATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

255

Amino Acids

28.36

Weight (kDa)

7.54

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease	PF00324	14 - 169	4.4e-19	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AarI	CACCTGC	1 cut(s)	38
Acc36I	ACCTGC	1 cut(s)	38
AclWI	GGATC	2 cut(s)	222, 297
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	2 cut(s)	5, 615
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	62, 136, 487, 722
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	6 cut(s)	309, 359, 505, 509, 601, 748
AluI	AGCT	6 cut(s)	309, 359, 505, 509, 601, 748
Alw21I	GWGCWC	2 cut(s)	79, 549
Alw44I	GTGCAC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	222, 297
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	587
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	5 cut(s)	53, 92, 601, 734, 745
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	488, 713
AsuNHI	GCTAGC	2 cut(s)	415, 505
BaeGI	GKGCMC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	2 cut(s)	79, 549
BbvI	GCAGC	5 cut(s)	40, 79, 588, 721, 757
BccI	CCATC	4 cut(s)	140, 473, 575, 630
BciT130I	CCWGG	1 cut(s)	212
BciVI	GTATCC	1 cut(s)	573
BfaI	CTAG	6 cut(s)	168, 296, 416, 506, 530, 695
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	5 cut(s)	54, 93, 602, 735, 746
BlsI	GCNGC	5 cut(s)	55, 94, 603, 736, 747
Bme1390I	CCNGG	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	209, 341
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	4 cut(s)	289, 459, 715, 742
BmtI	GCTAGC	2 cut(s)	419, 509
BmuI	ACTGGG	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	4 cut(s)	142, 174, 331, 363
BsaHI	GRCGYC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	33, 317, 590, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse118I	RCCGGY	2 cut(s)	260, 585
Bse1I	ACTGG	3 cut(s)	76, 119, 476
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	4 cut(s)	33, 317, 590, 729
BseGI	GGATG	2 cut(s)	567, 622
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseNI	ACTGG	3 cut(s)	76, 119, 476
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	5 cut(s)	40, 79, 588, 721, 757
BseYI	CCCAGC	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	589
BsiEI	CGRYCG	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	79, 549
BsiSI	CCGG	2 cut(s)	261, 586
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmI	GAATGC	2 cut(s)	176, 398
BsnI	GGCC	1 cut(s)	589
Bsp1286I	GDGCHC	2 cut(s)	79, 549
Bsp143I	GATC	4 cut(s)	214, 289, 387, 524
BspANI	GGCC	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	209, 341
BspMI	ACCTGC	1 cut(s)	38
BspOI	GCTAGC	2 cut(s)	419, 509
BspPI	GGATC	2 cut(s)	222, 297
BspQI	GCTCTTC	1 cut(s)	63
BsrFI	RCCGGY	2 cut(s)	260, 585
BsrI	ACTGG	3 cut(s)	76, 119, 476
BssAI	RCCGGY	2 cut(s)	260, 585
BssECI	CCNNGG	4 cut(s)	33, 317, 590, 729
BssMI	GATC	4 cut(s)	214, 289, 387, 524
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	3 cut(s)	33, 590, 729
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	2 cut(s)	63, 354
BstACI	GRCGYC	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	9 cut(s)	90, 311, 417, 427, 466, 507, 587, 739, 743
BstF5I	GGATG	2 cut(s)	567, 622
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	4 cut(s)	217, 292, 390, 527
BstMBI	GATC	4 cut(s)	214, 289, 387, 524
BstMCI	CGRYCG	1 cut(s)	527
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 98, 173, 641, 734
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	5 cut(s)	40, 79, 588, 721, 757
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	214, 289
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	2 cut(s)	214, 289
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	589
BtsCI	GGATG	2 cut(s)	567, 622
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	9 cut(s)	90, 311, 417, 427, 466, 507, 587, 739, 743
CaiI	CAGNNNCTG	1 cut(s)	53
CfoI	GCGC	1 cut(s)	494
Cfr10I	RCCGGY	2 cut(s)	260, 585
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	4, 614
CviAII	CATG	3 cut(s)	652, 710, 760
CviQI	GTAC	2 cut(s)	4, 614
DpnI	GATC	4 cut(s)	216, 291, 389, 526
DpnII	GATC	4 cut(s)	214, 289, 387, 524
Eam1104I	CTCTTC	2 cut(s)	63, 354
EarI	CTCTTC	2 cut(s)	63, 354
Eco130I	CCWWGG	3 cut(s)	33, 590, 729
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	3 cut(s)	33, 590, 729
EcoT22I	ATGCAT	1 cut(s)	765
ErhI	CCWWGG	3 cut(s)	33, 590, 729
FaeI	CATG	3 cut(s)	655, 713, 763
FatI	CATG	3 cut(s)	651, 709, 759
Fnu4HI	GCNGC	5 cut(s)	54, 93, 602, 735, 746
FokI	GGATG	2 cut(s)	554, 609
Fsp4HI	GCNGC	5 cut(s)	54, 93, 602, 735, 746
FspBI	CTAG	6 cut(s)	168, 296, 416, 506, 530, 695
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	5 cut(s)	54, 93, 602, 735, 746
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	2 cut(s)	261, 586
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	3 cut(s)	655, 713, 763
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HpaII	CCGG	2 cut(s)	261, 586
HphI	GGTGA	2 cut(s)	488, 713
Hpy166II	GTNNAC	3 cut(s)	155, 268, 547
Hpy188I	TCNGA	1 cut(s)	515
Hpy188III	TCNNGA	4 cut(s)	287, 385, 487, 695
Hpy8I	GTNNAC	3 cut(s)	155, 268, 547
HpyAV	CCTTC	3 cut(s)	257, 293, 655
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4V	TGCA	7 cut(s)	47, 143, 425, 547, 651, 741, 763
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 98, 173, 641, 734
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	3 cut(s)	655, 713, 763
HspAI	GCGC	1 cut(s)	492
KroI	GCCGGC	1 cut(s)	585
KroNI	GCCGGC	1 cut(s)	587
Kzo9I	GATC	4 cut(s)	214, 289, 387, 524
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	5 cut(s)	82, 307, 339, 356, 533
Lsp1109I	GCAGC	5 cut(s)	40, 79, 588, 721, 757
LweI	GCATC	4 cut(s)	289, 459, 715, 742
MaeI	CTAG	6 cut(s)	168, 296, 416, 506, 530, 695
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	4 cut(s)	216, 291, 389, 526
MboI	GATC	4 cut(s)	214, 289, 387, 524
MboII	GAAGA	6 cut(s)	50, 341, 512, 667, 670, 734
MflI	RGATCY	2 cut(s)	214, 289
MhlI	GDGCHC	2 cut(s)	79, 549
MluCI	AATT	4 cut(s)	201, 326, 556, 630
MnlI	CCTC	4 cut(s)	168, 327, 353, 628
Mph1103I	ATGCAT	1 cut(s)	765
MroNI	GCCGGC	1 cut(s)	585
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	407, 714
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	2 cut(s)	261, 586
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	2 cut(s)	176, 398
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	5 cut(s)	53, 98, 173, 641, 734
NaeI	GCCGGC	1 cut(s)	587
NdeII	GATC	4 cut(s)	214, 289, 387, 524
NgoMIV	GCCGGC	1 cut(s)	585
NheI	GCTAGC	2 cut(s)	415, 505
NlaIII	CATG	3 cut(s)	655, 713, 763
NlaIV	GGNNCC	2 cut(s)	209, 341
NsiI	ATGCAT	1 cut(s)	765
NspI	RCATGY	1 cut(s)	763
OliI	CACNNNNGTG	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	63
PctI	GAATGC	2 cut(s)	176, 398
PdiI	GCCGGC	1 cut(s)	587
PkrI	GCNGC	5 cut(s)	55, 94, 603, 736, 747
Ple19I	CGATCG	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	209, 341
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	214, 289
PvuI	CGATCG	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	309
RsaI	GTAC	2 cut(s)	5, 615
RsaNI	GTAC	2 cut(s)	4, 614
RseI	CAYNNNNRTG	2 cut(s)	407, 714
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	5 cut(s)	54, 93, 602, 735, 746
Sau3AI	GATC	4 cut(s)	214, 289, 387, 524
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	2 cut(s)	79, 549
SfaNI	GCATC	4 cut(s)	289, 459, 715, 742
SfcI	CTRYAG	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	407, 714
Sse9I	AATT	4 cut(s)	201, 326, 556, 630
SspMI	CTAG	6 cut(s)	168, 296, 416, 506, 530, 695
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	3 cut(s)	33, 590, 729
TaaI	ACNGT	1 cut(s)	701
TaqI	TCGA	1 cut(s)	523
TasI	AATT	4 cut(s)	201, 326, 556, 630
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseI	GCWGC	5 cut(s)	53, 92, 601, 734, 745
TspDTI	ATGAA	3 cut(s)	42, 668, 726
VneI	GTGCAC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	1 cut(s)	763
XspI	CTAG	6 cut(s)	168, 296, 416, 506, 530, 695
Zsp2I	ATGCAT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.