Rmu_sc0005803.1_g000020

Cation-chloride cotransporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005803.1
Physical Location & Seq
Reverse (-)
108793 .. 110432
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005803.1_g000020.1.cds

Sequence Viewer

Length: 1248 bp
atgttcttgatctcttgggcattcactatagtgtcgctagcccttgcaagccttatatattattatgtgagcatcaaaggaaaggctggggactggggtgacggtttcaagagcgcatattttcagctagctctccgaagtcttcgatcgctaggagcaaaccaagtgcacccaaagaattggtatcccatccccctgatattctgccggccttgggggaagctgccagagaatgtaccctgccatcccaaacttgccgacttcgccaactgcatgaagaagaagggcaggggaatgtctatctttgtgtctattctagacggtgattaccatgaatgtgttgaagatgccaaggctgcctgcaagcagcttgatgcttacattgagtacaagcactgtgaaggtgtagctgagattgttgtcgcccccagtatgtctgaaggcttccgcggcattgtccagacaatgggtcttggcaatctcaagccaaacatagtggttatgcggtatcctgaaatatggcgtcgcgaaaacttaacagaaattccaaacacctttgttgaaataataaatgattgcatagttgcaaacaaggcagtagttattgtcaaaggtcttgacgaatggcccaatgagtttcagaggcagtatggtactattgatctctattggatagtaagagatggaggtctgatgcttcttctctctcagctcctcctcactaaggaaagctttgaaagttgtaaaattcaagttttctgcattgcggaggaggatactgatgcagaggggctcaaggctgatgtgaagaagtttctgtatgatcttcgaatgcatgcagaagtcattgttgtaacaatgaagtcgtgggatatgcaagcagacagtggggctcctcaagatgaatctgtggaggcttataatgctgctcaaaagcggatagctgattacttggccgagatgaagtcaacagctaagaaacaagggacaccactgatggcggatgggaaacaggtcgttgtgaatgagcagcaggtggagaagtttctttacactactctgaagttgaattcaacaatactcagatactcgagaatggctgcggtcgtgctcgttagcttacctcctcctccagtcaaccacccagcatacttctacatggaatacatggatttgttggtggagaatgtgcctagacttctgattgtgagaggataccgtagggatgttgtaactctattcacgtag

Protein Analysis

415

Amino Acids

47.08

Weight (kDa)

6.35

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AarI CACCTGC 1 cut(s) 1024
Acc36I ACCTGC 1 cut(s) 1024
AccB7I CCANNNNNTGG 1 cut(s) 466
AccII CGCG 2 cut(s) 450, 528
AciI CCGC 7 cut(s) 448, 450, 505, 767, 937, 1001, 1103
AcoI YGGCCR 1 cut(s) 954
AcsI RAATTY 3 cut(s) 543, 747, 1069
AcuI CTGAAG 2 cut(s) 459, 1082
AcyI GRCGYC 1 cut(s) 523
AfaI GTAC 3 cut(s) 237, 389, 655
AfiI CCNNNNNNNGG 3 cut(s) 214, 466, 724
AgsI TTSAA 7 cut(s) 109, 344, 563, 737, 752, 1069, 1074
AhdI GACNNNNNGTC 1 cut(s) 468
AleI CACNNNNGTG 1 cut(s) 29
Alw21I GWGCWC 2 cut(s) 171, 1113
Alw44I GTGCAC 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 1090
AoxI GGCC 3 cut(s) 209, 626, 954
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 6 cut(s) 223, 356, 367, 926, 1030, 1100
ApoI RAATTY 3 cut(s) 543, 747, 1069
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 627
AsuHPI GGTGA 2 cut(s) 110, 335
AsuII TTCGAA 1 cut(s) 829
AsuNHI GCTAGC 2 cut(s) 37, 127
AvaI CYCGRG 1 cut(s) 1090
BaeGI GKGCMC 1 cut(s) 171
BanII GRGCYC 2 cut(s) 795, 895
BarI GAAGNNNNNNTAC 2 cut(s) 1034, 1066
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 2 cut(s) 171, 1113
BbvI GCAGC 6 cut(s) 210, 343, 379, 913, 1042, 1087
BccI CCATC 5 cut(s) 197, 252, 677, 991, 998
BciVI GTATCC 4 cut(s) 195, 519, 769, 1208
BfaI CTAG 5 cut(s) 38, 128, 152, 317, 1194
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 1024
BfuI GTATCC 4 cut(s) 195, 519, 769, 1208
BisI GCNGC 7 cut(s) 224, 357, 368, 451, 927, 1031, 1101
BlsI GCNGC 7 cut(s) 225, 358, 369, 452, 928, 1032, 1102
BmeRI GACNNNNNGTC 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 1090
BmgT120I GGNCC 1 cut(s) 627
BmiI GGNNCC 1 cut(s) 894
BmrI ACTGGG 2 cut(s) 103, 423
BmsI GCATC 5 cut(s) 81, 337, 364, 684, 772
BmtI GCTAGC 2 cut(s) 41, 131
BmuI ACTGGG 2 cut(s) 103, 423
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 1116
Bpu14I TTCGAA 1 cut(s) 829
BpuEI CTTGAG 3 cut(s) 467, 779, 882
BsaAI YACGTR 1 cut(s) 1245
BsaHI GRCGYC 1 cut(s) 523
BsaJI CCNNGG 3 cut(s) 212, 351, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 466, 724
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 3 cut(s) 98, 429, 1133
Bse3DI GCAATG 1 cut(s) 762
BseDI CCNNGG 3 cut(s) 212, 351, 448
BseGI GGATG 4 cut(s) 189, 244, 1009, 1231
BseLI CCNNNNNNNGG 3 cut(s) 214, 466, 724
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 402, 722, 1096
BseNI ACTGG 3 cut(s) 98, 429, 1133
BseRI GAGGAG 6 cut(s) 704, 707, 785, 885, 1116, 1119
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 6 cut(s) 210, 343, 379, 913, 1042, 1087
BseYI CCCAGC 2 cut(s) 86, 1144
Bsh1236I CGCG 2 cut(s) 450, 528
Bsh1285I CGRYCG 2 cut(s) 149, 1107
BshFI GGCC 3 cut(s) 211, 628, 956
BsiEI CGRYCG 2 cut(s) 149, 1107
BsiHKAI GWGCWC 2 cut(s) 171, 1113
BsiHKCI CYCGRG 1 cut(s) 1090
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 2 cut(s) 104, 1000
BslI CCNNNNNNNGG 3 cut(s) 214, 466, 724
BsmFI GGGAC 2 cut(s) 104, 1000
BsmI GAATGC 2 cut(s) 20, 837
BsnI GGCC 3 cut(s) 211, 628, 956
BsoBI CYCGRG 1 cut(s) 1090
Bsp119I TTCGAA 1 cut(s) 829
Bsp1286I GDGCHC 4 cut(s) 171, 795, 895, 1113
Bsp143I GATC 4 cut(s) 9, 146, 661, 823
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 7 cut(s) 448, 450, 505, 767, 937, 1001, 1103
BspANI GGCC 3 cut(s) 211, 628, 956
BspCNI CTCAG 3 cut(s) 403, 721, 1095
BspFNI CGCG 2 cut(s) 450, 528
BspLI GGNNCC 1 cut(s) 894
BspMI ACCTGC 1 cut(s) 1024
BspOI GCTAGC 2 cut(s) 41, 131
BspT104I TTCGAA 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 3 cut(s) 98, 429, 1133
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 3 cut(s) 212, 351, 448
BssMI GATC 4 cut(s) 9, 146, 661, 823
BssNI GRCGYC 1 cut(s) 523
BssT1I CCWWGG 2 cut(s) 212, 351
Bst4CI ACNGT 5 cut(s) 104, 323, 398, 887, 1220
BstACI GRCGYC 1 cut(s) 523
BstBAI YACGTR 1 cut(s) 1245
BstBI TTCGAA 1 cut(s) 829
BstC8I GCNNGC 8 cut(s) 39, 49, 129, 209, 361, 365, 837, 879
BstDEI CTNAG 5 cut(s) 411, 708, 723, 975, 1082
BstDSI CCRYGG 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 722
BstF5I GGATG 4 cut(s) 189, 244, 1009, 1231
BstFNI CGCG 2 cut(s) 450, 528
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 4 cut(s) 12, 149, 664, 826
BstMBI GATC 4 cut(s) 9, 146, 661, 823
BstMCI CGRYCG 2 cut(s) 149, 1107
BstMWI GCNNNNNNNGC 5 cut(s) 263, 356, 450, 593, 923
BstNSI RCATGY 1 cut(s) 839
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 2 cut(s) 450, 528
BstV1I GCAGC 6 cut(s) 210, 343, 379, 913, 1042, 1087
BstV2I GAAGAC 1 cut(s) 134
BstXI CCANNNNNNTGG 1 cut(s) 180
BsuI GTATCC 4 cut(s) 195, 519, 769, 1208
BsuRI GGCC 3 cut(s) 211, 628, 956
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 4 cut(s) 189, 244, 1009, 1231
BtsIMutI CAGTG 3 cut(s) 394, 892, 992
BtuMI TCGCGA 1 cut(s) 528
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 8 cut(s) 39, 49, 129, 209, 361, 365, 837, 879
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 627
Cfr42I CCGCGG 1 cut(s) 451
CseI GACGC 1 cut(s) 512
Csp6I GTAC 3 cut(s) 236, 388, 654
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 5 cut(s) 274, 332, 836, 1159, 1168
CviQI GTAC 3 cut(s) 236, 388, 654
DdeI CTNAG 5 cut(s) 411, 708, 723, 975, 1082
DpnI GATC 4 cut(s) 11, 148, 663, 825
DpnII GATC 4 cut(s) 9, 146, 661, 823
DriI GACNNNNNGTC 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 954
Eam1105I GACNNNNNGTC 1 cut(s) 468
EciI GGCGGA 1 cut(s) 1016
Eco130I CCWWGG 2 cut(s) 212, 351
Eco24I GRGCYC 2 cut(s) 795, 895
Eco57I CTGAAG 2 cut(s) 459, 1082
Eco88I CYCGRG 1 cut(s) 1090
EcoNI CCTNNNNNAGG 1 cut(s) 722
EcoRI GAATTC 1 cut(s) 1069
EcoT14I CCWWGG 2 cut(s) 212, 351
EcoT22I ATGCAT 1 cut(s) 837
EcoT38I GRGCYC 2 cut(s) 795, 895
ErhI CCWWGG 2 cut(s) 212, 351
FaeI CATG 5 cut(s) 277, 335, 839, 1162, 1171
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 2 cut(s) 104, 1000
FatI CATG 5 cut(s) 273, 331, 835, 1158, 1167
Fnu4HI GCNGC 7 cut(s) 224, 357, 368, 451, 927, 1031, 1101
FokI GGATG 4 cut(s) 176, 231, 1016, 1238
FriOI GRGCYC 2 cut(s) 795, 895
Fsp4HI GCNGC 7 cut(s) 224, 357, 368, 451, 927, 1031, 1101
FspBI CTAG 5 cut(s) 38, 128, 152, 317, 1194
GlaI GCGC 1 cut(s) 115
GluI GCNGC 7 cut(s) 224, 357, 368, 451, 927, 1031, 1101
GsaI CCCAGC 2 cut(s) 90, 1148
GsuI CTGGAG 1 cut(s) 1116
HaeIII GGCC 3 cut(s) 211, 628, 956
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 523
Hin1II CATG 5 cut(s) 277, 335, 839, 1162, 1171
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 2 cut(s) 969, 1138
HindII GTYRAC 2 cut(s) 969, 1138
HindIII AAGCTT 1 cut(s) 730
HinfI GANTC 1 cut(s) 905
HpaII CCGG 1 cut(s) 208
HphI GGTGA 2 cut(s) 110, 335
Hpy166II GTNNAC 3 cut(s) 169, 969, 1138
Hpy188I TCNGA 7 cut(s) 137, 439, 642, 693, 1062, 1085, 1203
Hpy188III TCNNGA 9 cut(s) 7, 109, 317, 460, 512, 527, 617, 899, 1092
Hpy8I GTNNAC 3 cut(s) 169, 969, 1138
Hpy99I CGWCG 1 cut(s) 528
HpyAV CCTTC 3 cut(s) 277, 395, 434
HpyCH4III ACNGT 5 cut(s) 104, 323, 398, 887, 1220
HpyCH4IV ACGT 1 cut(s) 1244
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 356, 450, 593, 923
HpyF3I CTNAG 5 cut(s) 411, 708, 723, 975, 1082
HpySE526I ACGT 1 cut(s) 1244
Hsp92I GRCGYC 1 cut(s) 523
Hsp92II CATG 5 cut(s) 277, 335, 839, 1162, 1171
HspAI GCGC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 207
KroNI GCCGGC 1 cut(s) 209
KspI CCGCGG 1 cut(s) 451
Kzo9I GATC 4 cut(s) 9, 146, 661, 823
LmnI GCTCC 3 cut(s) 155, 717, 898
Lsp1109I GCAGC 6 cut(s) 210, 343, 379, 913, 1042, 1087
LweI GCATC 5 cut(s) 81, 337, 364, 684, 772
MaeI CTAG 5 cut(s) 38, 128, 152, 317, 1194
MaeII ACGT 1 cut(s) 1244
MaeIII GTNAC 3 cut(s) 98, 853, 1231
MalI GATC 4 cut(s) 11, 148, 663, 825
MboI GATC 4 cut(s) 9, 146, 661, 823
MboII GAAGA 7 cut(s) 134, 289, 292, 356, 692, 818, 820
MhlI GDGCHC 4 cut(s) 171, 795, 895, 1113
MluCI AATT 4 cut(s) 178, 543, 747, 1069
Mph1103I ATGCAT 1 cut(s) 837
MroNI GCCGGC 1 cut(s) 207
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 2 cut(s) 29, 336
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 1 cut(s) 208
Mva1269I GAATGC 2 cut(s) 20, 837
MvnI CGCG 2 cut(s) 450, 528
MwoI GCNNNNNNNGC 5 cut(s) 263, 356, 450, 593, 923
NaeI GCCGGC 1 cut(s) 209
NdeII GATC 4 cut(s) 9, 146, 661, 823
NgoMIV GCCGGC 1 cut(s) 207
NheI GCTAGC 2 cut(s) 37, 127
NlaIII CATG 5 cut(s) 277, 335, 839, 1162, 1171
NlaIV GGNNCC 1 cut(s) 894
NmeAIII GCCGAG 1 cut(s) 982
NmuCI GTSAC 1 cut(s) 98
NruI TCGCGA 1 cut(s) 528
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 1 cut(s) 839
NspV TTCGAA 1 cut(s) 829
OliI CACNNNNGTG 1 cut(s) 29
PaeI GCATGC 1 cut(s) 839
PaeR7I CTCGAG 1 cut(s) 1090
PaqCI CACCTGC 1 cut(s) 1024
PctI GAATGC 2 cut(s) 20, 837
PdiI GCCGGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 905
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 7 cut(s) 225, 358, 369, 452, 928, 1032, 1102
Ple19I CGATCG 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 1245
PsiI TTATAA 1 cut(s) 921
PspFI CCCAGC 2 cut(s) 86, 1144
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 1 cut(s) 627
PvuI CGATCG 1 cut(s) 149
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 3 cut(s) 237, 389, 655
RsaNI GTAC 3 cut(s) 236, 388, 654
RseI CAYNNNNRTG 2 cut(s) 29, 336
SacII CCGCGG 1 cut(s) 451
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 7 cut(s) 224, 357, 368, 451, 927, 1031, 1101
Sau3AI GATC 4 cut(s) 9, 146, 661, 823
Sau96I GGNCC 1 cut(s) 627
SduI GDGCHC 4 cut(s) 171, 795, 895, 1113
SfaNI GCATC 5 cut(s) 81, 337, 364, 684, 772
SfcI CTRYAG 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 1090
Sfr303I CCGCGG 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 829
SgrBI CCGCGG 1 cut(s) 451
SlaI CTCGAG 1 cut(s) 1090
SmiMI CAYNNNNRTG 2 cut(s) 29, 336
SmlI CTYRAG 4 cut(s) 482, 794, 897, 1090
SmoI CTYRAG 4 cut(s) 482, 794, 897, 1090
SphI GCATGC 1 cut(s) 839
Sse9I AATT 4 cut(s) 178, 543, 747, 1069
SsiI CCGC 7 cut(s) 448, 450, 505, 767, 937, 1001, 1103
SspMI CTAG 5 cut(s) 38, 128, 152, 317, 1194
StyI CCWWGG 2 cut(s) 212, 351
TaaI ACNGT 5 cut(s) 104, 323, 398, 887, 1220
TaiI ACGT 1 cut(s) 1247
TaqI TCGA 3 cut(s) 145, 829, 1091
TasI AATT 4 cut(s) 178, 543, 747, 1069
TatI WGTACW 1 cut(s) 387
TauI GCSGC 1 cut(s) 453
TfiI GAWTC 1 cut(s) 905
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 3 cut(s) 401, 892, 999
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 6 cut(s) 223, 356, 367, 926, 1030, 1100
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 5 cut(s) 290, 348, 875, 918, 977
TspRI CASTG 3 cut(s) 401, 892, 999
Van91I CCANNNNNTGG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 167
XagI CCTNNNNNAGG 1 cut(s) 722
XapI RAATTY 3 cut(s) 543, 747, 1069
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 1 cut(s) 839
XhoI CTCGAG 1 cut(s) 1090
XspI CTAG 5 cut(s) 38, 128, 152, 317, 1194
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.