Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011313.1

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

1883 .. 2251

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011313.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgcttaacttttcactcgcatcaaaccaagtgcacccaaagaattggtatcccatccctctgatattctgccggccttgggggaagctgccagagaatgtaccatcccatcccaaacttgccgacttcgccaattgtatgaagaagaagggcaggggaatgtctatctttgtgtctattctagacactgattaccatgaatgtgttgaagatgccaaggttgtctacaagcagcttgatgcttacattgaggacaagcactgtgaaggtgtagctaagattgttatcgcccctagtatgtctgaaggcttccgcggcattgtccagacaatgggtcttaccgtcttggcaatctcaagccaaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

122

Amino Acids

13.66

Weight (kDa)

7.69

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	315
AciI	CCGC	2 cut(s)	313, 315
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	79, 331
AgsI	TTSAA	1 cut(s)	209
AhdI	GACNNNNNGTC	1 cut(s)	333
AluBI	AGCT	3 cut(s)	88, 235, 275
AluI	AGCT	3 cut(s)	88, 235, 275
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	2 cut(s)	88, 232
BaeGI	GKGCMC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	75, 244
BccI	CCATC	3 cut(s)	62, 112, 117
BciVI	GTATCC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	182, 294
BfuI	GTATCC	1 cut(s)	60
BisI	GCNGC	3 cut(s)	89, 233, 316
BlsI	GCNGC	3 cut(s)	90, 234, 317
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmsI	GCATC	3 cut(s)	29, 202, 229
BpuEI	CTTGAG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	77, 216, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 331
Bse118I	RCCGGY	1 cut(s)	72
Bse8I	GATNNNNATC	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	77, 216, 313
BseGI	GGATG	3 cut(s)	54, 104, 109
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	2 cut(s)	79, 331
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	75, 244
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	79, 331
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	313, 315
BspANI	GGCC	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	77, 216, 313
BssT1I	CCWWGG	2 cut(s)	77, 216
Bst4CI	ACNGT	2 cut(s)	263, 343
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	54, 104, 109
BstFNI	CGCG	1 cut(s)	315
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 315
BstSLI	GKGCMC	1 cut(s)	36
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	75, 244
BstXI	CCANNNNNNTGG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	54, 104, 109
BtsIMutI	CAGTG	2 cut(s)	186, 259
Cac8I	GCNNGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	72
Cfr42I	CCGCGG	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	6 cut(s)	76, 88, 235, 275, 309, 360
CviKI_1	RGCY	6 cut(s)	76, 88, 235, 275, 309, 360
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	276
DriI	GACNNNNNGTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	77, 216
Eco57I	CTGAAG	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	77, 216
ErhI	CCWWGG	2 cut(s)	77, 216
FaeI	CATG	1 cut(s)	200
FaiI	YATR	4 cut(s)	140, 198, 299, 367
FatI	CATG	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	89, 233, 316
FokI	GGATG	3 cut(s)	41, 91, 96
Fsp4HI	GCNGC	3 cut(s)	89, 233, 316
FspBI	CTAG	2 cut(s)	182, 294
GluI	GCNGC	3 cut(s)	89, 233, 316
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	200
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	34, 226
Hpy188I	TCNGA	2 cut(s)	63, 304
Hpy188III	TCNNGA	2 cut(s)	182, 325
Hpy8I	GTNNAC	2 cut(s)	34, 226
HpyAV	CCTTC	3 cut(s)	142, 260, 299
HpyCH4III	ACNGT	2 cut(s)	263, 343
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 315
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
KspI	CCGCGG	1 cut(s)	316
LpnPI	CCDG	4 cut(s)	86, 105, 139, 338
Lsp1109I	GCAGC	2 cut(s)	75, 244
LweI	GCATC	3 cut(s)	29, 202, 229
MaeI	CTAG	2 cut(s)	182, 294
MboII	GAAGA	3 cut(s)	154, 157, 221
MfeI	CAATTG	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	43, 133
MnlI	CCTC	2 cut(s)	69, 244
MroNI	GCCGGC	1 cut(s)	72
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	128, 315
NaeI	GCCGGC	1 cut(s)	74
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	200
PdiI	GCCGGC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	90, 234, 317
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	201
SacII	CCGCGG	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	3 cut(s)	89, 233, 316
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	5 cut(s)	90, 222, 237, 271, 277
SfaNI	GCATC	3 cut(s)	29, 202, 229
Sfr303I	CCGCGG	1 cut(s)	316
SgrBI	CCGCGG	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	2 cut(s)	43, 133
SsiI	CCGC	2 cut(s)	313, 315
SspMI	CTAG	2 cut(s)	182, 294
StyI	CCWWGG	2 cut(s)	77, 216
TaaI	ACNGT	2 cut(s)	263, 343
TasI	AATT	2 cut(s)	43, 133
TauI	GCSGC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	193, 266
TseI	GCWGC	2 cut(s)	88, 232
TspDTI	ATGAA	2 cut(s)	155, 213
TspRI	CASTG	2 cut(s)	193, 266
Van91I	CCANNNNNTGG	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	32
XbaI	TCTAGA	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	182, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.