Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

10949004 .. 10950553

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAGAGTGTTACTTTCGGCTACTATATCTTGGCCTTTCCCAGCATTCATTTACGTGGGAATAATTCTTTCAACCTTAGGTGCTGCTCTTCAAAGCCTGACTGGTGCTCCCCGTCTGCTTGCTGCGATAGCCAATGATGATTTCTTACCAGTTCTTAACTACTTCAAGGTTGCAGATGGGAGTGAACCTCACTTTGCTAGTAACGCATTCCTTTGTATTGCGTGTGTTATAATTGGGAACCTGGATCTTATCACACCAACTATAACTATGTTTTTCCTTCTGTGTTATGCCGGTGTGAACTTATCTTGCTTCCTTCTGGATCTCCTAGATGCTCCCAGCTGGCGTCCTCGGTGGAAATTCCACCATTGGAGCCTCTCTCTTCTTGGAGCTTCACTATGTATAGTGATTATGTTCTTGATCTCTTGGGCATTCACTATAGTGTCGCTAGCCCTTGCAAGCCTTATATATTATTATGTGAGCATCAAAGGAAAGGCTGGCGACTGGGGTGATGGTTTCAAGAGCGCATATTTTCAGCTAGCTCTCCGAAGTCTTCGATCGCTAGGAGCAAACCAAGTGCACCCAAAGAATTGGTATCCCATCCCCCTGATATTCTGCCGGCCTTGGGGGAAGCTGCCAGAGAATGTACCCTCCCATCCCAAAATTGCCGACTTCGCCAACTGCATGAAGAAGAAGGGCAGGGGAATGTCTATCTTTGTGTCTATTCTAGACGGTGATTACCATGAATGTGTTGAAGATGCCAAGGCTGCCTGCAAGCAGCTTGATGCTTACATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

265

Amino Acids

29.42

Weight (kDa)

8.53

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease	PF00324	13 - 179	3.9e-22	Amino acid permease
AA_permease_2	PF13520	15 - 158	1.4e-06	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AclWI	GGATC	2 cut(s)	252, 327
AcsI	RAATTY	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	343
AfaI	GTAC	1 cut(s)	645
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	5 cut(s)	72, 92, 166, 517, 752
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	6 cut(s)	339, 389, 535, 539, 631, 778
AluI	AGCT	6 cut(s)	339, 389, 535, 539, 631, 778
Alw21I	GWGCWC	2 cut(s)	109, 579
Alw44I	GTGCAC	1 cut(s)	575
AlwI	GGATC	2 cut(s)	252, 327
AoxI	GGCC	2 cut(s)	32, 617
ApaLI	GTGCAC	1 cut(s)	575
ApeKI	GCWGC	5 cut(s)	83, 122, 631, 764, 775
ApoI	RAATTY	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	518, 743
AsuNHI	GCTAGC	2 cut(s)	445, 535
AxyI	CCTNAGG	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	109, 579
BbvI	GCAGC	5 cut(s)	70, 109, 618, 751, 787
BccI	CCATC	4 cut(s)	170, 503, 605, 660
BciT130I	CCWGG	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	603
BfaI	CTAG	6 cut(s)	198, 326, 446, 536, 560, 725
BfmI	CTRYAG	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	603
BisI	GCNGC	5 cut(s)	84, 123, 632, 765, 776
BlsI	GCNGC	5 cut(s)	85, 124, 633, 766, 777
Bme1390I	CCNGG	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	239, 371
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	4 cut(s)	319, 489, 745, 772
BmtI	GCTAGC	2 cut(s)	449, 539
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	542
BplI	GAGNNNNNCTC	4 cut(s)	172, 204, 361, 393
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	343
BsaJI	CCNNGG	3 cut(s)	347, 620, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse118I	RCCGGY	2 cut(s)	290, 615
Bse1I	ACTGG	3 cut(s)	106, 149, 506
Bse21I	CCTNAGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	347, 620, 759
BseGI	GGATG	2 cut(s)	597, 652
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseNI	ACTGG	3 cut(s)	106, 149, 506
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	5 cut(s)	70, 109, 618, 751, 787
BseYI	CCCAGC	2 cut(s)	40, 335
Bsh1285I	CGRYCG	1 cut(s)	557
BshFI	GGCC	2 cut(s)	34, 619
BsiEI	CGRYCG	1 cut(s)	557
BsiHKAI	GWGCWC	2 cut(s)	109, 579
BsiSI	CCGG	2 cut(s)	291, 616
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmI	GAATGC	3 cut(s)	44, 206, 428
BsnI	GGCC	2 cut(s)	34, 619
Bsp1286I	GDGCHC	2 cut(s)	109, 579
Bsp143I	GATC	4 cut(s)	244, 319, 417, 554
BspANI	GGCC	2 cut(s)	34, 619
BspLI	GGNNCC	2 cut(s)	239, 371
BspOI	GCTAGC	2 cut(s)	449, 539
BspPI	GGATC	2 cut(s)	252, 327
BspQI	GCTCTTC	1 cut(s)	93
BsrFI	RCCGGY	2 cut(s)	290, 615
BsrI	ACTGG	3 cut(s)	106, 149, 506
BssAI	RCCGGY	2 cut(s)	290, 615
BssECI	CCNNGG	3 cut(s)	347, 620, 759
BssMI	GATC	4 cut(s)	244, 319, 417, 554
BssNI	GRCGYC	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	620, 759
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	731
Bst6I	CTCTTC	2 cut(s)	93, 384
BstACI	GRCGYC	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	9 cut(s)	120, 341, 447, 457, 496, 537, 617, 769, 773
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	597, 652
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	4 cut(s)	247, 322, 420, 557
BstMBI	GATC	4 cut(s)	244, 319, 417, 554
BstMCI	CGRYCG	1 cut(s)	557
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 203, 671, 764
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	435
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	5 cut(s)	70, 109, 618, 751, 787
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	2 cut(s)	244, 319
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	2 cut(s)	244, 319
Bsu36I	CCTNAGG	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	2 cut(s)	34, 619
BtsCI	GGATG	2 cut(s)	597, 652
Cac8I	GCNNGC	9 cut(s)	120, 341, 447, 457, 496, 537, 617, 769, 773
CfoI	GCGC	1 cut(s)	524
Cfr10I	RCCGGY	2 cut(s)	290, 615
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	644
CviAII	CATG	3 cut(s)	682, 740, 790
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	4 cut(s)	246, 321, 419, 556
DpnII	GATC	4 cut(s)	244, 319, 417, 554
Eam1104I	CTCTTC	2 cut(s)	93, 384
EarI	CTCTTC	2 cut(s)	93, 384
Eco130I	CCWWGG	2 cut(s)	620, 759
Eco81I	CCTNAGG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	620, 759
EcoT22I	ATGCAT	1 cut(s)	795
ErhI	CCWWGG	2 cut(s)	620, 759
FaeI	CATG	3 cut(s)	685, 743, 793
FatI	CATG	3 cut(s)	681, 739, 789
Fnu4HI	GCNGC	5 cut(s)	84, 123, 632, 765, 776
FokI	GGATG	2 cut(s)	584, 639
Fsp4HI	GCNGC	5 cut(s)	84, 123, 632, 765, 776
FspBI	CTAG	6 cut(s)	198, 326, 446, 536, 560, 725
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	5 cut(s)	84, 123, 632, 765, 776
GsaI	CCCAGC	2 cut(s)	44, 339
HaeIII	GGCC	2 cut(s)	34, 619
HapII	CCGG	2 cut(s)	291, 616
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	524
Hin1I	GRCGYC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	685, 743, 793
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HpaII	CCGG	2 cut(s)	291, 616
HphI	GGTGA	2 cut(s)	518, 743
Hpy166II	GTNNAC	3 cut(s)	185, 298, 577
Hpy188I	TCNGA	1 cut(s)	545
Hpy188III	TCNNGA	4 cut(s)	317, 415, 517, 725
Hpy8I	GTNNAC	3 cut(s)	185, 298, 577
HpyAV	CCTTC	3 cut(s)	287, 323, 685
HpyCH4III	ACNGT	1 cut(s)	731
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	6 cut(s)	173, 455, 577, 681, 771, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 203, 671, 764
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	685, 743, 793
HspAI	GCGC	1 cut(s)	522
KroI	GCCGGC	1 cut(s)	615
KroNI	GCCGGC	1 cut(s)	617
Kzo9I	GATC	4 cut(s)	244, 319, 417, 554
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	5 cut(s)	112, 337, 369, 386, 563
Lsp1109I	GCAGC	5 cut(s)	70, 109, 618, 751, 787
LweI	GCATC	4 cut(s)	319, 489, 745, 772
MaeI	CTAG	6 cut(s)	198, 326, 446, 536, 560, 725
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	9, 200
MalI	GATC	4 cut(s)	246, 321, 419, 556
MboI	GATC	4 cut(s)	244, 319, 417, 554
MboII	GAAGA	6 cut(s)	80, 371, 542, 697, 700, 764
MflI	RGATCY	2 cut(s)	244, 319
MhlI	GDGCHC	2 cut(s)	109, 579
MluCI	AATT	5 cut(s)	63, 231, 356, 586, 660
MnlI	CCTC	4 cut(s)	198, 357, 383, 658
Mph1103I	ATGCAT	1 cut(s)	795
MroNI	GCCGGC	1 cut(s)	615
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	3 cut(s)	53, 437, 744
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	2 cut(s)	291, 616
MspR9I	CCNGG	1 cut(s)	242
Mva1269I	GAATGC	3 cut(s)	44, 206, 428
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	128, 203, 671, 764
NaeI	GCCGGC	1 cut(s)	617
NdeII	GATC	4 cut(s)	244, 319, 417, 554
NgoMIV	GCCGGC	1 cut(s)	615
NheI	GCTAGC	2 cut(s)	445, 535
NlaIII	CATG	3 cut(s)	685, 743, 793
NlaIV	GGNNCC	2 cut(s)	239, 371
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	1 cut(s)	793
OliI	CACNNNNGTG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	93
PctI	GAATGC	3 cut(s)	44, 206, 428
PdiI	GCCGGC	1 cut(s)	617
PkrI	GCNGC	5 cut(s)	85, 124, 633, 766, 777
Ple19I	CGATCG	1 cut(s)	557
Ppu21I	YACGTR	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	2 cut(s)	40, 335
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	239, 371
PsuI	RGATCY	2 cut(s)	244, 319
PvuI	CGATCG	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	339
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
RseI	CAYNNNNRTG	3 cut(s)	53, 437, 744
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	5 cut(s)	84, 123, 632, 765, 776
Sau3AI	GATC	4 cut(s)	244, 319, 417, 554
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	109, 579
SfaNI	GCATC	4 cut(s)	319, 489, 745, 772
SfcI	CTRYAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	3 cut(s)	53, 437, 744
Sse9I	AATT	5 cut(s)	63, 231, 356, 586, 660
SspMI	CTAG	6 cut(s)	198, 326, 446, 536, 560, 725
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	620, 759
TaaI	ACNGT	1 cut(s)	731
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	553
TasI	AATT	5 cut(s)	63, 231, 356, 586, 660
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	5 cut(s)	83, 122, 631, 764, 775
TspDTI	ATGAA	3 cut(s)	37, 698, 756
VneI	GTGCAC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	1 cut(s)	793
XspI	CTAG	6 cut(s)	198, 326, 446, 536, 560, 725
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.