Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8164906.1

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

168 .. 557

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8164906.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgaagtcgtgggatatgcaagcagacagtggggctcctcaagatgaatctgtggaggcttataatgctgctcaaaagcggatagctgattacttggccgagatgaagtcaacagctaagaaacaagggacaccactgatggcggatgggaaacaggtcgttgtgaatgagcagcaggtggagaagtttctttacactactctgaagttgaattcaacaatactcagatactcgagaatggctgcggtcgtgctcgttagcttacctcctcctccagtcaaccacccagcatacttctacatggaatacatggatttgttggtggagaatgtgcctagacttctgattgtgagaggataccgtagggatgttgtaactctattcacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

129

Amino Acids

14.68

Weight (kDa)

7.9

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	166
AciI	CCGC	3 cut(s)	79, 143, 245
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	211, 216
AluBI	AGCT	3 cut(s)	86, 116, 261
AluI	AGCT	3 cut(s)	86, 116, 261
Alw21I	GWGCWC	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	3 cut(s)	68, 172, 242
ApoI	RAATTY	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	3 cut(s)	55, 184, 229
BccI	CCATC	2 cut(s)	133, 140
BciVI	GTATCC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	166
BfuI	GTATCC	1 cut(s)	350
BisI	GCNGC	3 cut(s)	69, 173, 243
BlsI	GCNGC	3 cut(s)	70, 174, 244
BmeT110I	CYCGRG	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	275
BseGI	GGATG	2 cut(s)	151, 373
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	3 cut(s)	27, 258, 261
BseXI	GCAGC	3 cut(s)	55, 184, 229
BseYI	CCCAGC	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	37, 255
BspACI	CCGC	3 cut(s)	79, 143, 245
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	29, 362
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	117, 224
BstF5I	GGATG	2 cut(s)	151, 373
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	55, 184, 229
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	151, 373
BtsIMutI	CAGTG	2 cut(s)	34, 134
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	21
CviAII	CATG	2 cut(s)	301, 310
CviJI	RGCY	7 cut(s)	35, 59, 86, 98, 116, 242, 261
CviKI_1	RGCY	7 cut(s)	35, 59, 86, 98, 116, 242, 261
DdeI	CTNAG	2 cut(s)	117, 224
EaeI	YGGCCR	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	2 cut(s)	304, 313
FaiI	YATR	5 cut(s)	17, 63, 292, 302, 311
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	300, 309
Fnu4HI	GCNGC	3 cut(s)	69, 173, 243
FokI	GGATG	2 cut(s)	158, 380
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	3 cut(s)	69, 173, 243
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	3 cut(s)	69, 173, 243
GsaI	CCCAGC	1 cut(s)	290
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	304, 313
HincII	GTYRAC	2 cut(s)	111, 280
HindII	GTYRAC	2 cut(s)	111, 280
HinfI	GANTC	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	111, 280
Hpy188I	TCNGA	3 cut(s)	204, 227, 345
Hpy188III	TCNNGA	2 cut(s)	41, 234
Hpy8I	GTNNAC	2 cut(s)	111, 280
HpyCH4III	ACNGT	2 cut(s)	29, 362
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	117, 224
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	2 cut(s)	304, 313
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	140, 161, 288, 300
Lsp1109I	GCAGC	3 cut(s)	55, 184, 229
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	37, 255
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	6 cut(s)	48, 49, 276, 279, 282, 347
MwoI	GCNNNNNNNGC	1 cut(s)	65
NlaIII	CATG	2 cut(s)	304, 313
NlaIV	GGNNCC	1 cut(s)	36
NmeAIII	GCCGAG	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	70, 174, 244
Ppu21I	YACGTR	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	36
SatI	GCNGC	3 cut(s)	69, 173, 243
SduI	GDGCHC	2 cut(s)	37, 255
SetI	ASST	7 cut(s)	88, 118, 159, 180, 263, 268, 389
Sfr274I	CTCGAG	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	232
SmlI	CTYRAG	2 cut(s)	39, 232
SmoI	CTYRAG	2 cut(s)	39, 232
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	3 cut(s)	79, 143, 245
SspMI	CTAG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	29, 362
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	47
TscAI	CASTG	2 cut(s)	34, 141
TseI	GCWGC	3 cut(s)	68, 172, 242
TspDTI	ATGAA	3 cut(s)	17, 60, 119
TspRI	CASTG	2 cut(s)	34, 141
XapI	RAATTY	1 cut(s)	211
XhoI	CTCGAG	1 cut(s)	232
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.