Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

12240977 .. 12241885

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTTAACTTTTCACTCGCAGCAAACCAAGCGCACCCAAAGAATTGGTATCCCATCCCTCTGATATTCTGCTGGCCTTGGGGGAAGCTGCCAGAGAATGTACACTCCCATCCCAAACTTGCCGACTTCGCCAACTGTATGAAGAAGAAGGGCAGGGGAATGTCTATCTTTGTGTCTATTCTAGACGCTGATTACCATGAATGTGTTGAAGATGCCAAGGCTGTCTGCAAGCAGCTTGATGCTTACATTGAGGACAAGCACTGTGAAGGTGTAGCTAAGATTGTTATCGCCCCCATTGCAAACAAGGCAGTAGTTATTGTCAAAGGTCTTGACGAATGGCCCAATGAGTTTCAGAGGCAATATGGTACTATTGATCTCTATTGGATAGTAAGAGATGAAGGTCTGATGCTTCTTCTCTCTCAGCTACTCCTCACTACGGAAAGCATTGAAAGTTGTAAAATTCAAGTTTTCTGCATTGCGGAGGAGGATACTGATGCAGAGGGGCTCAAGGCTGATGTGAAGAAGTTTCTGTATGATCTTCGCATGCATGCAGAAGTCATTTTTGTAACAATGAAGTCGTGGGATATGCAAGCAAACAGTGGGGCTCGTCAAGATGAATTTGTGGAGGCTTATAATGCTGCTCAAAGGCTGATAGCTGATTACTTGGCTGAGATGAAGTCAACAGCTAAGAAACAGGGGACACCACTGATGGCGGATGGAAACAGGTCGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

245

Amino Acids

27.61

Weight (kDa)

5.42

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SLC12	PF03522	117 - 212	4.1e-11	Solute carrier family 12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AciI	CCGC	2 cut(s)	479, 713
AcsI	RAATTY	2 cut(s)	459, 617
AfaI	GTAC	2 cut(s)	102, 367
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	209, 449, 464
AluBI	AGCT	6 cut(s)	88, 235, 275, 424, 656, 686
AluI	AGCT	6 cut(s)	88, 235, 275, 424, 656, 686
AoxI	GGCC	2 cut(s)	74, 338
ApeKI	GCWGC	4 cut(s)	20, 88, 232, 638
ApoI	RAATTY	2 cut(s)	459, 617
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	339
BanII	GRGCYC	2 cut(s)	507, 607
BbvI	GCAGC	4 cut(s)	32, 75, 244, 625
BccI	CCATC	4 cut(s)	62, 117, 703, 710
BciVI	GTATCC	2 cut(s)	60, 481
BfaI	CTAG	1 cut(s)	182
BfuI	GTATCC	2 cut(s)	60, 481
BisI	GCNGC	4 cut(s)	21, 89, 233, 639
BlsI	GCNGC	4 cut(s)	22, 90, 234, 640
BmgT120I	GGNCC	1 cut(s)	339
BmsI	GCATC	4 cut(s)	202, 229, 396, 484
BpuEI	CTTGAG	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	77, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse3DI	GCAATG	2 cut(s)	294, 474
Bse8I	GATNNNNATC	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	77, 216
BseGI	GGATG	3 cut(s)	54, 109, 721
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	2 cut(s)	294, 474
BseMII	CTCAG	2 cut(s)	434, 660
BseRI	GAGGAG	2 cut(s)	419, 497
BseXI	GCAGC	4 cut(s)	32, 75, 244, 625
BshFI	GGCC	2 cut(s)	76, 340
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	76, 340
Bsp1286I	GDGCHC	2 cut(s)	507, 607
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	373, 535
BspACI	CCGC	2 cut(s)	479, 713
BspANI	GGCC	2 cut(s)	76, 340
BspCNI	CTCAG	2 cut(s)	433, 661
BsrDI	GCAATG	2 cut(s)	294, 474
BsrGI	TGTACA	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	77, 216
BssMI	GATC	2 cut(s)	373, 535
BssT1I	CCWWGG	2 cut(s)	77, 216
Bst4CI	ACNGT	3 cut(s)	137, 263, 599
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	5 cut(s)	74, 230, 545, 549, 591
BstDEI	CTNAG	4 cut(s)	276, 420, 669, 687
BstF5I	GGATG	3 cut(s)	54, 109, 721
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	376, 538
BstMBI	GATC	2 cut(s)	373, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 128, 296, 305, 635
BstNSI	RCATGY	2 cut(s)	547, 551
BstV1I	GCAGC	4 cut(s)	32, 75, 244, 625
BstXI	CCANNNNNNTGG	1 cut(s)	45
BsuI	GTATCC	2 cut(s)	60, 481
BsuRI	GGCC	2 cut(s)	76, 340
BtsCI	GGATG	3 cut(s)	54, 109, 721
BtsIMutI	CAGTG	3 cut(s)	259, 604, 704
Cac8I	GCNNGC	5 cut(s)	74, 230, 545, 549, 591
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	339
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	101, 366
CviAII	CATG	3 cut(s)	197, 544, 548
CviQI	GTAC	2 cut(s)	101, 366
DdeI	CTNAG	4 cut(s)	276, 420, 669, 687
DpnI	GATC	2 cut(s)	375, 537
DpnII	GATC	2 cut(s)	373, 535
EciI	GGCGGA	1 cut(s)	728
Eco130I	CCWWGG	2 cut(s)	77, 216
Eco24I	GRGCYC	2 cut(s)	507, 607
EcoT14I	CCWWGG	2 cut(s)	77, 216
EcoT22I	ATGCAT	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	507, 607
ErhI	CCWWGG	2 cut(s)	77, 216
FaeI	CATG	3 cut(s)	200, 547, 551
FaiI	YATR	8 cut(s)	140, 198, 363, 534, 545, 549, 587, 633
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	3 cut(s)	196, 543, 547
Fnu4HI	GCNGC	4 cut(s)	21, 89, 233, 639
FokI	GGATG	3 cut(s)	41, 96, 728
FriOI	GRGCYC	2 cut(s)	507, 607
Fsp4HI	GCNGC	4 cut(s)	21, 89, 233, 639
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	21, 89, 233, 639
HaeIII	GGCC	2 cut(s)	76, 340
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	200, 547, 551
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
Hpy166II	GTNNAC	2 cut(s)	103, 681
Hpy188I	TCNGA	3 cut(s)	63, 354, 405
Hpy188III	TCNNGA	4 cut(s)	182, 329, 611, 732
Hpy8I	GTNNAC	2 cut(s)	103, 681
Hpy99I	CGWCG	1 cut(s)	733
HpyAV	CCTTC	3 cut(s)	142, 260, 392
HpyCH4III	ACNGT	3 cut(s)	137, 263, 599
HpyCH4V	TGCA	7 cut(s)	228, 299, 474, 497, 547, 551, 589
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 128, 296, 305, 635
HpyF3I	CTNAG	4 cut(s)	276, 420, 669, 687
Hsp92II	CATG	3 cut(s)	200, 547, 551
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	373, 535
LpnPI	CCDG	5 cut(s)	58, 105, 139, 680, 709
Lsp1109I	GCAGC	4 cut(s)	32, 75, 244, 625
LweI	GCATC	4 cut(s)	202, 229, 396, 484
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	2 cut(s)	375, 537
MboI	GATC	2 cut(s)	373, 535
MboII	GAAGA	6 cut(s)	154, 157, 221, 404, 530, 532
MhlI	GDGCHC	2 cut(s)	507, 607
MluCI	AATT	3 cut(s)	43, 459, 617
MnlI	CCTC	8 cut(s)	69, 244, 348, 440, 475, 478, 493, 619
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	5 cut(s)	29, 128, 296, 305, 635
NdeII	GATC	2 cut(s)	373, 535
NlaIII	CATG	3 cut(s)	200, 547, 551
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	2 cut(s)	547, 551
PaeI	GCATGC	2 cut(s)	547, 551
PkrI	GCNGC	4 cut(s)	22, 90, 234, 640
PsiI	TTATAA	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	339
RsaI	GTAC	2 cut(s)	102, 367
RsaNI	GTAC	2 cut(s)	101, 366
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	4 cut(s)	21, 89, 233, 639
Sau3AI	GATC	2 cut(s)	373, 535
Sau96I	GGNCC	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	507, 607
SfaNI	GCATC	4 cut(s)	202, 229, 396, 484
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	2 cut(s)	547, 551
Sse9I	AATT	3 cut(s)	43, 459, 617
SsiI	CCGC	2 cut(s)	479, 713
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	77, 216
TaaI	ACNGT	3 cut(s)	137, 263, 599
TasI	AATT	3 cut(s)	43, 459, 617
TatI	WGTACW	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	3 cut(s)	266, 604, 711
TseI	GCWGC	4 cut(s)	20, 88, 232, 638
TspDTI	ATGAA	6 cut(s)	155, 213, 411, 587, 630, 689
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	3 cut(s)	266, 604, 711
XapI	RAATTY	2 cut(s)	459, 617
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	2 cut(s)	547, 551
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.