Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007629.1

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1930

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1112 bp

ctgactggtgctccccgtctgcttgctgcaatagccaatgatgatatcttaccagttcttaactacttcaaggttgcagatgggagtgaacctcactttgctaccttatttaccgcattcctttgtattgcgtgtgttataattgggaacctggatcttatcacaccaactataactatgtttttccttctgtgttatgccggtgtgaacttatcttgcttccttctggatctcctagatgctcccagctggcgtcctcggtggaaattccaccattggagcctctctcttcttggagcttcattatgtatagtgattatgttcttgatctcttgggcattcactatagtgtcgctagcccttgcaagccttatatattattatgtgagcatcaaaggaaaggctggggactggggtgacggtttcaagagcgcatattttcagctagctctccgaagtcttcgatcgctaggagcaaaccaagtgcacccaaagaattggtatcccatccccctgatattctgccggccttgggggaagctgccagagaatgtaccctgccatcccaaacttgccgacttcgccaactgcatgaagaagaagggcaggggaatgtctatctttgtgtctattctagacggtgattaccatgaatgtgttgaagatgccaaggctgcctgcaagcagcttgatgcttacattgagtacaagcactgtgaaggtgtagctgagattgttgtcgcccccagtatgtctgaaggcttccgcggcattgtccagacaatgggtcttggcaatctcaagccaaacatagtggttatgcggtatcctgaaatatggcgtcgcgaaaacttaacagaaattccaaacacctttgttgaaataataaatgattgcatagttgcaaacaaggcagtagttattgtcaaaggtcttgacgaatggcccaatgagtttcagaggcagtatggtactattgatctctattggatagtaagagatggaggtctgatgcttcttctctctcagctcctcctcactaaggaaagctttgaaagttgtaaaattcaagttttctgcattgcggaggaggatactgatgcagaggggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

371

Amino Acids

41.64

Weight (kDa)

5.7

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccII	CGCG	2 cut(s)	768, 846
AciI	CCGC	5 cut(s)	114, 766, 768, 823, 1085
AclWI	GGATC	2 cut(s)	162, 237
AcsI	RAATTY	3 cut(s)	266, 861, 1065
AcuI	CTGAAG	1 cut(s)	777
AcyI	GRCGYC	2 cut(s)	253, 841
AfaI	GTAC	3 cut(s)	555, 707, 973
AfiI	CCNNNNNNNGG	3 cut(s)	532, 784, 1042
AgsI	TTSAA	6 cut(s)	70, 427, 662, 881, 1055, 1070
AhdI	GACNNNNNGTC	1 cut(s)	786
AjnI	CCWGG	1 cut(s)	150
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	9 cut(s)	249, 299, 445, 449, 541, 688, 728, 1030, 1050
AluI	AGCT	9 cut(s)	249, 299, 445, 449, 541, 688, 728, 1030, 1050
Alw21I	GWGCWC	2 cut(s)	13, 489
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	162, 237
AoxI	GGCC	2 cut(s)	527, 944
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	4 cut(s)	26, 541, 674, 685
ApoI	RAATTY	3 cut(s)	266, 861, 1065
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	945
AsuHPI	GGTGA	2 cut(s)	428, 653
AsuNHI	GCTAGC	2 cut(s)	355, 445
BaeGI	GKGCMC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	13, 489
BbvI	GCAGC	4 cut(s)	13, 528, 661, 697
BccI	CCATC	4 cut(s)	74, 515, 570, 995
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	3 cut(s)	513, 837, 1087
BfaI	CTAG	5 cut(s)	236, 356, 446, 470, 635
BfmI	CTRYAG	1 cut(s)	345
BfuI	GTATCC	3 cut(s)	513, 837, 1087
BisI	GCNGC	5 cut(s)	27, 542, 675, 686, 769
BlsI	GCNGC	5 cut(s)	28, 543, 676, 687, 770
Bme1390I	CCNGG	1 cut(s)	152
BmeRI	GACNNNNNGTC	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	945
BmiI	GGNNCC	2 cut(s)	149, 281
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	2 cut(s)	421, 741
BmsI	GCATC	6 cut(s)	229, 399, 655, 682, 1002, 1090
BmtI	GCTAGC	2 cut(s)	359, 449
BmuI	ACTGGG	2 cut(s)	421, 741
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	4 cut(s)	76, 108, 271, 303
BpuEI	CTTGAG	1 cut(s)	785
BsaHI	GRCGYC	2 cut(s)	253, 841
BsaJI	CCNNGG	4 cut(s)	257, 530, 669, 766
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	3 cut(s)	532, 784, 1042
Bse118I	RCCGGY	2 cut(s)	200, 525
Bse1I	ACTGG	4 cut(s)	10, 53, 416, 747
Bse3DI	GCAATG	1 cut(s)	1080
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	4 cut(s)	257, 530, 669, 766
BseGI	GGATG	2 cut(s)	507, 562
BseLI	CCNNNNNNNGG	3 cut(s)	532, 784, 1042
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	2 cut(s)	720, 1040
BseNI	ACTGG	4 cut(s)	10, 53, 416, 747
BseRI	GAGGAG	3 cut(s)	1022, 1025, 1103
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	4 cut(s)	13, 528, 661, 697
BseYI	CCCAGC	2 cut(s)	245, 404
Bsh1236I	CGCG	2 cut(s)	768, 846
Bsh1285I	CGRYCG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	529, 946
BsiEI	CGRYCG	1 cut(s)	467
BsiHKAI	GWGCWC	2 cut(s)	13, 489
BsiSI	CCGG	2 cut(s)	201, 526
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	532, 784, 1042
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	2 cut(s)	116, 338
BsnI	GGCC	2 cut(s)	529, 946
Bsp1286I	GDGCHC	2 cut(s)	13, 489
Bsp143I	GATC	5 cut(s)	154, 229, 327, 464, 979
Bsp68I	TCGCGA	1 cut(s)	846
BspACI	CCGC	5 cut(s)	114, 766, 768, 823, 1085
BspANI	GGCC	2 cut(s)	529, 946
BspCNI	CTCAG	2 cut(s)	721, 1039
BspFNI	CGCG	2 cut(s)	768, 846
BspLI	GGNNCC	2 cut(s)	149, 281
BspOI	GCTAGC	2 cut(s)	359, 449
BspPI	GGATC	2 cut(s)	162, 237
BsrDI	GCAATG	1 cut(s)	1080
BsrFI	RCCGGY	2 cut(s)	200, 525
BsrI	ACTGG	4 cut(s)	10, 53, 416, 747
BssAI	RCCGGY	2 cut(s)	200, 525
BssECI	CCNNGG	4 cut(s)	257, 530, 669, 766
BssMI	GATC	5 cut(s)	154, 229, 327, 464, 979
BssNI	GRCGYC	2 cut(s)	253, 841
BssT1I	CCWWGG	2 cut(s)	530, 669
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	3 cut(s)	422, 641, 716
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	2 cut(s)	253, 841
BstC8I	GCNNGC	8 cut(s)	24, 251, 357, 367, 447, 527, 679, 683
BstDEI	CTNAG	3 cut(s)	729, 1026, 1041
BstDSI	CCRYGG	1 cut(s)	766
BstENI	CCTNNNNNAGG	1 cut(s)	1040
BstF5I	GGATG	2 cut(s)	507, 562
BstFNI	CGCG	2 cut(s)	768, 846
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	5 cut(s)	157, 232, 330, 467, 982
BstMBI	GATC	5 cut(s)	154, 229, 327, 464, 979
BstMCI	CGRYCG	1 cut(s)	467
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 581, 674, 768, 911
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	489
BstUI	CGCG	2 cut(s)	768, 846
BstV1I	GCAGC	4 cut(s)	13, 528, 661, 697
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	154, 229
BstXI	CCANNNNNNTGG	1 cut(s)	498
BstYI	RGATCY	2 cut(s)	154, 229
BsuI	GTATCC	3 cut(s)	513, 837, 1087
BsuRI	GGCC	2 cut(s)	529, 946
BtgI	CCRYGG	1 cut(s)	766
BtsCI	GGATG	2 cut(s)	507, 562
BtsIMutI	CAGTG	1 cut(s)	712
BtuMI	TCGCGA	1 cut(s)	846
Cac8I	GCNNGC	8 cut(s)	24, 251, 357, 367, 447, 527, 679, 683
CfoI	GCGC	1 cut(s)	434
Cfr10I	RCCGGY	2 cut(s)	200, 525
Cfr13I	GGNCC	1 cut(s)	945
Cfr42I	CCGCGG	1 cut(s)	769
CseI	GACGC	2 cut(s)	242, 830
Csp6I	GTAC	3 cut(s)	554, 706, 972
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	2 cut(s)	592, 650
CviQI	GTAC	3 cut(s)	554, 706, 972
DdeI	CTNAG	3 cut(s)	729, 1026, 1041
DpnI	GATC	5 cut(s)	156, 231, 329, 466, 981
DpnII	GATC	5 cut(s)	154, 229, 327, 464, 979
DriI	GACNNNNNGTC	1 cut(s)	786
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	530, 669
Eco32I	GATATC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	777
EcoNI	CCTNNNNNAGG	1 cut(s)	1040
EcoRII	CCWGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	530, 669
ErhI	CCWWGG	2 cut(s)	530, 669
FaeI	CATG	2 cut(s)	595, 653
FalI	AAGNNNNNCTT	2 cut(s)	1034, 1066
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	591, 649
Fnu4HI	GCNGC	5 cut(s)	27, 542, 675, 686, 769
FokI	GGATG	2 cut(s)	494, 549
Fsp4HI	GCNGC	5 cut(s)	27, 542, 675, 686, 769
FspBI	CTAG	5 cut(s)	236, 356, 446, 470, 635
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	5 cut(s)	27, 542, 675, 686, 769
GsaI	CCCAGC	2 cut(s)	249, 408
HaeIII	GGCC	2 cut(s)	529, 946
HapII	CCGG	2 cut(s)	201, 526
HgaI	GACGC	2 cut(s)	242, 830
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	2 cut(s)	253, 841
Hin1II	CATG	2 cut(s)	595, 653
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	1048
HpaII	CCGG	2 cut(s)	201, 526
HphI	GGTGA	2 cut(s)	428, 653
Hpy166II	GTNNAC	3 cut(s)	89, 208, 487
Hpy188I	TCNGA	4 cut(s)	455, 757, 960, 1011
Hpy188III	TCNNGA	8 cut(s)	227, 325, 427, 635, 778, 830, 845, 935
Hpy8I	GTNNAC	3 cut(s)	89, 208, 487
Hpy99I	CGWCG	1 cut(s)	846
HpyAV	CCTTC	5 cut(s)	197, 233, 595, 713, 752
HpyCH4III	ACNGT	3 cut(s)	422, 641, 716
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 581, 674, 768, 911
HpyF3I	CTNAG	3 cut(s)	729, 1026, 1041
Hsp92I	GRCGYC	2 cut(s)	253, 841
Hsp92II	CATG	2 cut(s)	595, 653
HspAI	GCGC	1 cut(s)	432
KroI	GCCGGC	1 cut(s)	525
KroNI	GCCGGC	1 cut(s)	527
KspI	CCGCGG	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	154, 229, 327, 464, 979
LmnI	GCTCC	6 cut(s)	16, 247, 279, 296, 473, 1035
Lsp1109I	GCAGC	4 cut(s)	13, 528, 661, 697
LweI	GCATC	6 cut(s)	229, 399, 655, 682, 1002, 1090
MaeI	CTAG	5 cut(s)	236, 356, 446, 470, 635
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	5 cut(s)	156, 231, 329, 466, 981
MboI	GATC	5 cut(s)	154, 229, 327, 464, 979
MboII	GAAGA	6 cut(s)	281, 452, 607, 610, 674, 1010
MflI	RGATCY	2 cut(s)	154, 229
MhlI	GDGCHC	2 cut(s)	13, 489
MluCI	AATT	5 cut(s)	141, 266, 496, 861, 1065
MroNI	GCCGGC	1 cut(s)	525
MseI	TTAA	2 cut(s)	60, 854
MslI	CAYNNNNRTG	2 cut(s)	347, 654
MspA1I	CMGCKG	2 cut(s)	249, 768
MspI	CCGG	2 cut(s)	201, 526
MspR9I	CCNGG	1 cut(s)	152
Mva1269I	GAATGC	2 cut(s)	116, 338
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	2 cut(s)	768, 846
MwoI	GCNNNNNNNGC	5 cut(s)	32, 581, 674, 768, 911
NaeI	GCCGGC	1 cut(s)	527
NdeII	GATC	5 cut(s)	154, 229, 327, 464, 979
NgoMIV	GCCGGC	1 cut(s)	525
NheI	GCTAGC	2 cut(s)	355, 445
NlaIII	CATG	2 cut(s)	595, 653
NlaIV	GGNNCC	2 cut(s)	149, 281
NmuCI	GTSAC	1 cut(s)	416
NruI	TCGCGA	1 cut(s)	846
OliI	CACNNNNGTG	1 cut(s)	347
PctI	GAATGC	2 cut(s)	116, 338
PdiI	GCCGGC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	784
PkrI	GCNGC	5 cut(s)	28, 543, 676, 687, 770
Ple19I	CGATCG	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	245, 404
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	149, 281
PspPI	GGNCC	1 cut(s)	945
PsuI	RGATCY	2 cut(s)	154, 229
PvuI	CGATCG	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	249
RruI	TCGCGA	1 cut(s)	846
RsaI	GTAC	3 cut(s)	555, 707, 973
RsaNI	GTAC	3 cut(s)	554, 706, 972
RseI	CAYNNNNRTG	2 cut(s)	347, 654
SacII	CCGCGG	1 cut(s)	769
SaqAI	TTAA	2 cut(s)	60, 854
SatI	GCNGC	5 cut(s)	27, 542, 675, 686, 769
Sau3AI	GATC	5 cut(s)	154, 229, 327, 464, 979
Sau96I	GGNCC	1 cut(s)	945
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	13, 489
SfaNI	GCATC	6 cut(s)	229, 399, 655, 682, 1002, 1090
SfcI	CTRYAG	1 cut(s)	345
Sfr303I	CCGCGG	1 cut(s)	769
SgrBI	CCGCGG	1 cut(s)	769
SmiMI	CAYNNNNRTG	2 cut(s)	347, 654
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	5 cut(s)	141, 266, 496, 861, 1065
SsiI	CCGC	5 cut(s)	114, 766, 768, 823, 1085
SspMI	CTAG	5 cut(s)	236, 356, 446, 470, 635
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	530, 669
TaaI	ACNGT	3 cut(s)	422, 641, 716
TaqI	TCGA	1 cut(s)	463
TasI	AATT	5 cut(s)	141, 266, 496, 861, 1065
TatI	WGTACW	1 cut(s)	705
TauI	GCSGC	1 cut(s)	771
Tru1I	TTAA	2 cut(s)	60, 854
Tru9I	TTAA	2 cut(s)	60, 854
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	4 cut(s)	26, 541, 674, 685
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	291, 608, 666
TspRI	CASTG	1 cut(s)	719
Van91I	CCANNNNNTGG	1 cut(s)	784
VneI	GTGCAC	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	1040
XapI	RAATTY	3 cut(s)	266, 861, 1065
XbaI	TCTAGA	1 cut(s)	634
XspI	CTAG	5 cut(s)	236, 356, 446, 470, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.