Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003989.1

Orthogroup ID

OG0003023

Physical Location & Seq

Genomic Coordinates Reverse (-)

7856 .. 8764

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003989.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgcttaacttttcactcgcagcaaaccaagtgcacccaaagaattggtatcccatccctctgatattctgccggccttgggggaagctgccagagaatgtaccatcccatcccaaacttgccgacttcgccaactgtatgaagaagaagggcaggggaatgtctatttttgtgtctattctagacactgattaccatgaatgtgttaaagatgccaaggttgtctgcaagcagcttgatgcttacattgagggccagcactgtgaaggtgtagctaagattgttatcgcccccaatatgtctgaaggcttccgtgggaaattccaaacacctttgttgagaggagccggatccctatctatccatcgcgtagttgcaaacaaggtagtagttattgtcaaaggtcttgacgaatggcccaatgagtttcagaggcaatatggtactattgatctctattggatagtaagagatggaggtctgatgcttcttctctctcagctactcctcactaaggaaagctttgaaagttgtaaaattcaagttttctgcattgcggaggaggatactgatgcagaggggctcaaggctgatgtgaagaagtttctgtatgatcttcgcatgcatacagaagtcattgttgtaacaatgaagtcgtgggatatgcaagcaaacagtggggctcctcaagatgaatctgtggaggcttataatgctgctcaaaggcggatagctgattacttggctgagatgaagtcaatagctaagaaacaggggacaccactgatggcggatggaaacaggtcgtcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006820 GO:0006821 GO:0008150 GO:0008324 GO:0008509 GO:0008511 GO:0009674 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015103 GO:0015108 GO:0015291 GO:0015293 GO:0015294 GO:0015296 GO:0015318 GO:0015370 GO:0015373 GO:0015377 GO:0015378 GO:0015379 GO:0015672 GO:0015698 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055064 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055081 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097708 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:0098771 GO:0098791 GO:1902476

KEGG Pathways

Metabolic & Signaling

ko04966 map04966

Pfam Domains

Protein Families

AA_permease SLC12

Protein Analysis

270

Amino Acids

30.33

Weight (kDa)

7.58

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30450 AT1G30450 AT1G30450 AT1G30450
fragaria_vesca	FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910 FvH4_3g09910
malus_domestica	MD05G1275000.v1.1 MD10G1254500.v1.1
prunus_persica	Prupe.4G088900_v2.0.a1 Prupe.4G088900_v2.0.a1
pyrus_communis	pycom05g25640 pycom10g21010
rosa_chinensis	RchiOBHm_Chr5g0015611 RchiOBHm_Chr5g0015801 RchiOBHm_Chr5g0015811
rosa_laevigata	RLG00000032213 RLG00000032223
rosa_multiflora	Rmu_co8164906.1_g000001 Rmu_sc0003989.1_g000002 Rmu_sc0005803.1_g000020 Rmu_sc0007629.1_g000001 Rmu_sc0011313.1_g000001 Rmu_sc0011313.1_g000002 Rmu_sc0016973.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060860
rosa_rugosa	Rorug05G0028900
rosa_samantha	Rh5AG122200 Rh5BG120800 Rh5CG131200 Rh5CG132900 Rh5CG133000 Rh5DG119800 Rh5DG120900
rosa_wichuraiana	Rw5G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	557, 727, 791
AclWI	GGATC	2 cut(s)	345, 358
AcsI	RAATTY	2 cut(s)	320, 537
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	102, 445
AfiI	CCNNNNNNNGG	2 cut(s)	79, 514
AgsI	TTSAA	2 cut(s)	527, 542
AluBI	AGCT	7 cut(s)	88, 235, 275, 502, 522, 734, 764
AluI	AGCT	7 cut(s)	88, 235, 275, 502, 522, 734, 764
Alw21I	GWGCWC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	345, 358
AoxI	GGCC	3 cut(s)	74, 253, 416
ApaLI	GTGCAC	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	20, 88, 232, 716
ApoI	RAATTY	2 cut(s)	320, 537
AspS9I	GGNCC	2 cut(s)	253, 417
BaeGI	GKGCMC	1 cut(s)	36
BamHI	GGATCC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	585, 685
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	4 cut(s)	32, 75, 244, 703
BccI	CCATC	7 cut(s)	62, 112, 117, 372, 467, 781, 788
BciVI	GTATCC	2 cut(s)	60, 559
BfaI	CTAG	1 cut(s)	182
BfuI	GTATCC	2 cut(s)	60, 559
BisI	GCNGC	4 cut(s)	21, 89, 233, 717
BlsI	GCNGC	4 cut(s)	22, 90, 234, 718
BmgT120I	GGNCC	2 cut(s)	253, 417
BmiI	GGNNCC	3 cut(s)	346, 352, 684
BmsI	GCATC	4 cut(s)	202, 229, 474, 562
BpuEI	CTTGAG	2 cut(s)	569, 672
BsaBI	GATNNNNATC	2 cut(s)	284, 355
BsaJI	CCNNGG	3 cut(s)	77, 216, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 514
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	2 cut(s)	284, 355
BseDI	CCNNGG	3 cut(s)	77, 216, 313
BseGI	GGATG	4 cut(s)	54, 104, 109, 799
BseJI	GATNNNNATC	2 cut(s)	284, 355
BseLI	CCNNNNNNNGG	2 cut(s)	79, 514
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	512, 738
BseRI	GAGGAG	4 cut(s)	357, 497, 575, 675
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	32, 75, 244, 703
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	76, 255, 418
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	73, 348
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	2 cut(s)	79, 514
BsmFI	GGGAC	1 cut(s)	790
BsnI	GGCC	3 cut(s)	76, 255, 418
Bsp1286I	GDGCHC	3 cut(s)	36, 585, 685
Bsp143I	GATC	3 cut(s)	350, 451, 613
BspACI	CCGC	3 cut(s)	557, 727, 791
BspANI	GGCC	3 cut(s)	76, 255, 418
BspCNI	CTCAG	2 cut(s)	511, 739
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	346, 352, 684
BspPI	GGATC	2 cut(s)	345, 358
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	3 cut(s)	77, 216, 313
BssMI	GATC	3 cut(s)	350, 451, 613
BssT1I	CCWWGG	2 cut(s)	77, 216
Bst4CI	ACNGT	3 cut(s)	137, 263, 677
BstC8I	GCNNGC	5 cut(s)	74, 230, 257, 623, 669
BstDEI	CTNAG	5 cut(s)	276, 498, 513, 747, 765
BstDSI	CCRYGG	1 cut(s)	313
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	4 cut(s)	54, 104, 109, 799
BstFNI	CGCG	1 cut(s)	369
BstKTI	GATC	3 cut(s)	353, 454, 616
BstMBI	GATC	3 cut(s)	350, 451, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 713
BstNSI	RCATGY	1 cut(s)	625
BstSLI	GKGCMC	1 cut(s)	36
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	4 cut(s)	32, 75, 244, 703
BstX2I	RGATCY	1 cut(s)	350
BstXI	CCANNNNNNTGG	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	2 cut(s)	60, 559
BsuRI	GGCC	3 cut(s)	76, 255, 418
BtgI	CCRYGG	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	4 cut(s)	54, 104, 109, 799
BtsIMutI	CAGTG	4 cut(s)	186, 259, 682, 782
Cac8I	GCNNGC	5 cut(s)	74, 230, 257, 623, 669
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	253, 417
Csp6I	GTAC	2 cut(s)	101, 444
CviAII	CATG	2 cut(s)	197, 622
CviQI	GTAC	2 cut(s)	101, 444
DdeI	CTNAG	5 cut(s)	276, 498, 513, 747, 765
DpnI	GATC	3 cut(s)	352, 453, 615
DpnII	GATC	3 cut(s)	350, 451, 613
EciI	GGCGGA	2 cut(s)	742, 806
Eco130I	CCWWGG	2 cut(s)	77, 216
Eco24I	GRGCYC	2 cut(s)	585, 685
Eco57I	CTGAAG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoT14I	CCWWGG	2 cut(s)	77, 216
EcoT22I	ATGCAT	1 cut(s)	627
EcoT38I	GRGCYC	2 cut(s)	585, 685
ErhI	CCWWGG	2 cut(s)	77, 216
FaeI	CATG	2 cut(s)	200, 625
FaiI	YATR	9 cut(s)	140, 198, 299, 441, 612, 623, 627, 665, 711
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	2 cut(s)	196, 621
Fnu4HI	GCNGC	4 cut(s)	21, 89, 233, 717
FokI	GGATG	4 cut(s)	41, 91, 96, 806
FriOI	GRGCYC	2 cut(s)	585, 685
Fsp4HI	GCNGC	4 cut(s)	21, 89, 233, 717
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	4 cut(s)	21, 89, 233, 717
HaeIII	GGCC	3 cut(s)	76, 255, 418
HapII	CCGG	2 cut(s)	73, 348
Hin1II	CATG	2 cut(s)	200, 625
HindIII	AAGCTT	1 cut(s)	520
HinfI	GANTC	1 cut(s)	695
HpaII	CCGG	2 cut(s)	73, 348
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	63, 304, 432, 483
Hpy188III	TCNNGA	4 cut(s)	182, 407, 689, 810
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	811
HpyAV	CCTTC	3 cut(s)	142, 260, 299
HpyCH4III	ACNGT	3 cut(s)	137, 263, 677
HpyCH4V	TGCA	7 cut(s)	34, 228, 377, 552, 575, 625, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 713
HpyF3I	CTNAG	5 cut(s)	276, 498, 513, 747, 765
Hsp92II	CATG	2 cut(s)	200, 625
KroI	GCCGGC	1 cut(s)	72
KroNI	GCCGGC	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	350, 451, 613
LmnI	GCTCC	2 cut(s)	344, 688
LpnPI	CCDG	7 cut(s)	86, 105, 139, 269, 361, 758, 787
Lsp1109I	GCAGC	4 cut(s)	32, 75, 244, 703
LweI	GCATC	4 cut(s)	202, 229, 474, 562
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	3 cut(s)	352, 453, 615
MboI	GATC	3 cut(s)	350, 451, 613
MboII	GAAGA	5 cut(s)	154, 157, 482, 608, 610
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	3 cut(s)	36, 585, 685
MluCI	AATT	3 cut(s)	43, 320, 537
Mph1103I	ATGCAT	1 cut(s)	627
MroNI	GCCGGC	1 cut(s)	72
MseI	TTAA	2 cut(s)	6, 207
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	2 cut(s)	73, 348
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	128, 713
NaeI	GCCGGC	1 cut(s)	74
NdeII	GATC	3 cut(s)	350, 451, 613
NgoMIV	GCCGGC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	200, 625
NlaIV	GGNNCC	3 cut(s)	346, 352, 684
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	1 cut(s)	625
PaeI	GCATGC	1 cut(s)	625
PdiI	GCCGGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	695
PkrI	GCNGC	4 cut(s)	22, 90, 234, 718
PsiI	TTATAA	1 cut(s)	711
PspN4I	GGNNCC	3 cut(s)	346, 352, 684
PspPI	GGNCC	2 cut(s)	253, 417
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	2 cut(s)	102, 445
RsaNI	GTAC	2 cut(s)	101, 444
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	6, 207
SatI	GCNGC	4 cut(s)	21, 89, 233, 717
Sau3AI	GATC	3 cut(s)	350, 451, 613
Sau96I	GGNCC	2 cut(s)	253, 417
SduI	GDGCHC	3 cut(s)	36, 585, 685
SfaNI	GCATC	4 cut(s)	202, 229, 474, 562
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	584, 687
SmoI	CTYRAG	2 cut(s)	584, 687
SphI	GCATGC	1 cut(s)	625
Sse9I	AATT	3 cut(s)	43, 320, 537
SsiI	CCGC	3 cut(s)	557, 727, 791
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	77, 216
TaaI	ACNGT	3 cut(s)	137, 263, 677
TasI	AATT	3 cut(s)	43, 320, 537
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	2 cut(s)	6, 207
Tru9I	TTAA	2 cut(s)	6, 207
TscAI	CASTG	4 cut(s)	193, 266, 682, 789
TseI	GCWGC	4 cut(s)	20, 88, 232, 716
TspDTI	ATGAA	5 cut(s)	155, 213, 665, 708, 767
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	4 cut(s)	193, 266, 682, 789
VneI	GTGCAC	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	2 cut(s)	320, 537
XbaI	TCTAGA	1 cut(s)	181
XceI	RCATGY	1 cut(s)	625
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.