Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003244

Physical Location & Seq

Genomic Coordinates Reverse (-)

61454140 .. 61455096

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTGATTGCGAATAATAGCAAAAACCTAGAGGGATCAAAAGTTCTGCCGAGTCTATTAATGTCTTCTCACAAGAATCTGGATGGAATAGAGGAAAAACTAGGGCTACAGGAAATTATAGAAGAATGCAAGGCCTTCTACTTTGTTGGCAAGGAAACAATTGCTAATCTTTTGACTTGGTCACTTATCCTTCTGGCGCGGCATCAGGAATGGCAAAGCAAGGCTAGAGAAGAAGTGATTATTTTCCTTTGTGGTCCTTGTGGACACAATAAGCATCCAGTCGAAGAGAATTTGAACGACCTCAAGATTGTAAGCATGATAATTAACGAAGCACTTAGACTCTATCCTCCTGGTGTGCTACTAAATAGGCAAACATCAAAGAAGGTGACTATGATAATCAATGAAACGCTGCGGCTTTACCCTCCAGCCCCATTTATAATGAGGGAAACACTAACAAGGGTTGAGCTAGGTGGTGGTCCTGGCCTCGACCTTCCTGCTGGTATACAGCTCTATTCAGCCTTGATTGCTCTACAACACGAGACAGAGATTTGGGGAGCGGATGCTAGTGGATTCAATCCACTGAGATTTAACGAGCCTGGAAAGCATCTAGCTTCACACTTCCCATTTGGGTTGGGACCTAGAATCTGTGTAGCTCAGAATTTTGGAATGACCGAGCTAAAAGTAATCTTAGCCATGATCGTTCAACATTATTCTTTCACAATGTCGCCAACTTATGTTCATGCCCCAGTTATGTCTGTAAATGTTCAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

257

Amino Acids

28.67

Weight (kDa)

6.5

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	20 - 130	6.1e-17	Cytochrome P450
p450	PF00067	130 - 243	7.9e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75130
fragaria_vesca	FvH4_2g40040 FvH4_2g40040 FvH4_2g40051
malus_domestica	MD08G1032800.v1.1 MD08G1032900.v1.1 MD08G1033000.v1.1 MD15G1029500.v1.1 MD15G1029600.v1.1
prunus_persica	Prupe.1G381900_v2.0.a1 Prupe.1G381900_v2.0.a1
pyrus_communis	pycom08g02610
rosa_chinensis	RchiOBHm_Chr6g0300691 RchiOBHm_Chr6g0300701 RchiOBHm_Chr6g0300711
rosa_laevigata	RLG00000011309 RLG00000011310 RLG00000011311
rosa_multiflora	Rmu_sc0004226.1_g000009 Rmu_sc0014374.1_g000005 Rmu_sc0014374.1_g000013 Rmu_sc0014374.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167490 Rroxscaffold_7G00167500 Rroxscaffold_7G00167510
rosa_rugosa	Rorug06G0298300 Rorug06G0298400 Rorug06G0298500 Rorug06G0298600
rosa_samantha	Rh6BG418400 Rh6BG418500 Rh6CG425900 Rh6DG411300 Rh6DG411400
rosa_wichuraiana	Rw0G002170 Rw6G035980 Rw6G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	502
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	199, 412, 557
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	289, 658
AgsI	TTSAA	3 cut(s)	295, 574, 704
AjnI	CCWGG	3 cut(s)	349, 478, 595
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	5 cut(s)	466, 508, 611, 653, 676
AluI	AGCT	5 cut(s)	466, 508, 611, 653, 676
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	2 cut(s)	132, 481
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	2 cut(s)	289, 658
AseI	ATTAAT	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	3 cut(s)	254, 476, 635
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	3 cut(s)	254, 476, 635
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	3 cut(s)	351, 480, 597
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	7 cut(s)	29, 101, 225, 467, 564, 608, 639
BfmI	CTRYAG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	200, 410, 413
BlsI	GCNGC	3 cut(s)	201, 411, 414
Bme1390I	CCNGG	3 cut(s)	351, 480, 597
Bme18I	GGWCC	3 cut(s)	254, 476, 635
BmgT120I	GGNCC	3 cut(s)	254, 476, 635
BmiI	GGNNCC	1 cut(s)	636
BmrFI	CCNGG	3 cut(s)	351, 480, 597
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	4 cut(s)	211, 283, 550, 613
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	278, 746
BseBI	CCWGG	3 cut(s)	351, 480, 597
BseGI	GGATG	3 cut(s)	88, 274, 565
BseMII	CTCAG	2 cut(s)	572, 668
BseNI	ACTGG	2 cut(s)	278, 746
BseXI	GCAGC	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	134, 483
BslFI	GGGAC	1 cut(s)	648
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	134, 483
Bsp143I	GATC	2 cut(s)	35, 696
BspACI	CCGC	3 cut(s)	199, 412, 557
BspANI	GGCC	2 cut(s)	134, 483
BspCNI	CTCAG	2 cut(s)	573, 667
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	278, 746
BssMI	GATC	2 cut(s)	35, 696
BssNAI	GTATAC	1 cut(s)	503
BssSI	CACGAG	1 cut(s)	536
Bst1107I	GTATAC	1 cut(s)	503
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	3 cut(s)	351, 480, 597
Bst6I	CTCTTC	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	335, 581, 654, 688
BstF5I	GGATG	3 cut(s)	88, 274, 565
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	38, 699
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	35, 696
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 601
BstNI	CCWGG	3 cut(s)	351, 480, 597
BstSCI	CCNGG	3 cut(s)	349, 478, 595
BstSFI	CTRYAG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	57
BstZ17I	GTATAC	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	134, 483
BtsCI	GGATG	3 cut(s)	88, 274, 565
BtsIMutI	CAGTG	1 cut(s)	578
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	3 cut(s)	254, 476, 635
CviAII	CATG	3 cut(s)	316, 694, 740
DdeI	CTNAG	4 cut(s)	335, 581, 654, 688
DpnI	GATC	2 cut(s)	37, 698
DpnII	GATC	2 cut(s)	35, 696
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	134
Eco47I	GGWCC	3 cut(s)	254, 476, 635
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	349, 478, 595
FaeI	CATG	3 cut(s)	319, 697, 743
FaiI	YATR	9 cut(s)	119, 317, 392, 437, 503, 695, 735, 741, 752
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	3 cut(s)	315, 693, 739
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	200, 410, 413
FokI	GGATG	3 cut(s)	95, 261, 572
Fsp4HI	GCNGC	3 cut(s)	200, 410, 413
FspBI	CTAG	7 cut(s)	29, 101, 225, 467, 564, 608, 639
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	3 cut(s)	200, 410, 413
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	134, 483
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	319, 697, 743
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HinfI	GANTC	5 cut(s)	52, 76, 339, 570, 642
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	2 cut(s)	263, 503
Hpy188I	TCNGA	1 cut(s)	657
Hpy188III	TCNNGA	3 cut(s)	80, 206, 304
Hpy8I	GTNNAC	2 cut(s)	263, 503
HpyAV	CCTTC	4 cut(s)	145, 200, 376, 500
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 601
HpyF3I	CTNAG	4 cut(s)	335, 581, 654, 688
Hsp92II	CATG	3 cut(s)	319, 697, 743
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	35, 696
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	4 cut(s)	211, 283, 550, 613
MaeI	CTAG	7 cut(s)	29, 101, 225, 467, 564, 608, 639
MaeIII	GTNAC	2 cut(s)	180, 385
MalI	GATC	2 cut(s)	37, 698
MbiI	CCGCTC	1 cut(s)	557
MboI	GATC	2 cut(s)	35, 696
MboII	GAAGA	4 cut(s)	57, 134, 242, 296
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	5 cut(s)	114, 159, 289, 321, 658
MlyI	GAGTC	2 cut(s)	61, 333
MnlI	CCTC	7 cut(s)	25, 85, 311, 357, 432, 435, 494
MseI	TTAA	4 cut(s)	59, 324, 588, 772
MspR9I	CCNGG	3 cut(s)	351, 480, 597
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	3 cut(s)	351, 480, 597
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	524, 601
NdeII	GATC	2 cut(s)	35, 696
NlaIII	CATG	3 cut(s)	319, 697, 743
NlaIV	GGNNCC	1 cut(s)	636
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	180, 385
PceI	AGGCCT	1 cut(s)	134
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	76, 570, 642
PflFI	GACNNNGTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	201, 411, 414
PleI	GAGTC	2 cut(s)	60, 333
PpsI	GAGTC	2 cut(s)	60, 333
PpuMI	RGGWCCY	1 cut(s)	635
PshBI	ATTAAT	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	3 cut(s)	349, 478, 595
PspGI	CCWGG	3 cut(s)	349, 478, 595
PspN4I	GGNNCC	1 cut(s)	636
PspPI	GGNCC	3 cut(s)	254, 476, 635
PspPPI	RGGWCCY	1 cut(s)	635
PsyI	GACNNNGTC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	59, 324, 588, 772
SatI	GCNGC	3 cut(s)	200, 410, 413
Sau3AI	GATC	2 cut(s)	35, 696
Sau96I	GGNCC	3 cut(s)	254, 476, 635
SchI	GAGTC	2 cut(s)	61, 333
ScrFI	CCNGG	3 cut(s)	351, 480, 597
SfaNI	GCATC	4 cut(s)	211, 283, 550, 613
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	3 cut(s)	254, 476, 635
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	5 cut(s)	114, 159, 289, 321, 658
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	3 cut(s)	199, 412, 557
SspMI	CTAG	7 cut(s)	29, 101, 225, 467, 564, 608, 639
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	3 cut(s)	349, 478, 595
TaqI	TCGA	2 cut(s)	282, 486
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	5 cut(s)	114, 159, 289, 321, 658
TauI	GCSGC	2 cut(s)	202, 415
TfiI	GAWTC	3 cut(s)	76, 570, 642
Tru1I	TTAA	4 cut(s)	59, 324, 588, 772
Tru9I	TTAA	4 cut(s)	59, 324, 588, 772
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	2 cut(s)	180, 385
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	2 cut(s)	180, 385
TspDTI	ATGAA	2 cut(s)	417, 728
TspRI	CASTG	1 cut(s)	585
Tth111I	GACNNNGTC	1 cut(s)	178
VpaK11BI	GGWCC	3 cut(s)	254, 476, 635
VspI	ATTAAT	1 cut(s)	59
XapI	RAATTY	2 cut(s)	289, 658
XmiI	GTMKAC	1 cut(s)	502
XspI	CTAG	7 cut(s)	29, 101, 225, 467, 564, 608, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.