RLG00000011311

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
8458963 .. 8468413
9451 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011311

Sequence Viewer

Length: 1263 bp
ATGTATTGGAAGAATTTCTTGTATTGGTTCGGGTTGAGGCCCAGGCTTCTACTGTCCGACCTGGATATGGTGAAGGAGGTGCTCATGAATACGAGTGGTTTGTATCAGAAGAACGCGTACAACCTTTCTACTAAGATCCTGTTTGCTAAGGGCCTTGCTGGGTTGGTCGGTGAGAAATGGGCTCTTCATCGGAGGATTGCAACCCAAGCCTTCACCCTGGAGAGAGTCAAGGGTTGGGTGCCTGAAATTGTGGCTAGTGCCACAAACATGCTTGAGAAATGGGGGAGTTTGAAAGGGGACAAAGATGAGTTTGAGTTGGATGTTCATGAAGAGCTTCATGAACTCTTGGCGGCTATCATATCCAGGGCAGCCTTTGGAAGTAGTTTTGAGGAAGGGAAGCGTATATTCAAATTACAAGAACAACAGATGAATTTTTATATAAAAGGAACTAGAAGTGTCTACATCCCCGGATACAGGTTTTTGCCTACCAAGGACAACAAAGAGAGGTGGAGATTGGAGAAGGAAACTCGCGAATCAGTACGGATACTGATCAAGAGGGAAAGAAGAGAAAGTGCGAGAAATCTTCTTGGTCTCTTAATGTCTTCTTACAAAGGTCAAGATGGTGAGGAGGAGAAATTAGAGGAGAAGGAAGTCATAGATGAATGCAAGACATTCTACTTTGCAGGGAAGGAGACAACTGCCAATATCTCAACCTGGGCTCTTCTCCTTCTGGCAAAGCATCAGGAATGGCAAGTCAAAGCTCGAGAAGAAGTACCAAGGATTTGCAGAGACAGTGAGCTTCCAATCGCACAGAATTTGAACAACCTTAAGAGTGTGACTGTGATAATCAATGAAACGCTGCGGCTTTACCCTCTAGCCCCATTTATAATGAGAGAAACACTAACAAGGGTTAAGCTAGGTGGTAGTACTGGCCTCGACCTTCTTGCTGGTACACAGCTCTATTCATCCTTGATTGCTCTGCAACACGACACAGAGATTTGGGGAGCGGATGCTAGTGAATTCAATCCACTGAGATTTAACGAGCCTCGGAAGCATCTAGCTTCACACTTCCCATTTGGGTTGGGACCTAGAATCTGTGTAGCTCAGAATTTTGCCATGACCGAGCTAAAAGTAATCTTAGCCATGATCGTTCAGCATTATTCTTTCACAGTGTCGCCAACTTATGTTCATGCCTCAGTTATGTCTGTAAATGTTCAGCCTCAATACGGTGCTCAGATCCTCTTTAGCAGGATTTCCAGTTGA

Protein Analysis

421

Amino Acids

48.25

Weight (kDa)

8.97

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 394 1.1e-69 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AccB1I GGYRCC 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 459
AccII CGCG 2 cut(s) 116, 531
AciI CCGC 3 cut(s) 350, 862, 1007
AclWI GGATC 2 cut(s) 130, 1231
AcsI RAATTY 5 cut(s) 13, 430, 814, 1019, 1108
AfaI GTAC 5 cut(s) 119, 540, 774, 928, 952
AfiI CCNNNNNNNGG 3 cut(s) 67, 474, 1226
AflII CTTAAG 1 cut(s) 827
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 4 cut(s) 292, 409, 820, 1024
AjnI CCWGG 5 cut(s) 41, 60, 216, 362, 713
AluBI AGCT 8 cut(s) 334, 761, 799, 916, 958, 1061, 1103, 1126
AluI AGCT 8 cut(s) 334, 761, 799, 916, 958, 1061, 1103, 1126
Alw21I GWGCWC 2 cut(s) 84, 1234
Alw26I GTCTC 3 cut(s) 596, 686, 783
AlwI GGATC 2 cut(s) 130, 1231
Ama87I CYCGRG 1 cut(s) 762
AoxI GGCC 3 cut(s) 38, 151, 931
ApeKI GCWGC 2 cut(s) 368, 859
ApoI RAATTY 5 cut(s) 13, 430, 814, 1019, 1108
Asp700I GAANNNNTTC 2 cut(s) 14, 333
AspS9I GGNCC 3 cut(s) 39, 151, 1085
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 4 cut(s) 82, 182, 205, 635
AvaI CYCGRG 1 cut(s) 762
AvaII GGWCC 1 cut(s) 1085
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 2 cut(s) 184, 721
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 2 cut(s) 84, 1234
BbvI GCAGC 2 cut(s) 380, 846
BccI CCATC 1 cut(s) 614
BcgI CGANNNNNNTGC 2 cut(s) 926, 960
BciT130I CCWGG 5 cut(s) 43, 62, 218, 364, 715
BciVI GTATCC 2 cut(s) 464, 537
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 3 cut(s) 596, 686, 783
BfaI CTAG 7 cut(s) 255, 450, 875, 917, 1014, 1058, 1089
BfrI CTTAAG 1 cut(s) 827
BfuI GTATCC 2 cut(s) 464, 537
BisI GCNGC 4 cut(s) 351, 369, 860, 863
BlsI GCNGC 4 cut(s) 352, 370, 861, 864
BmcAI AGTACT 1 cut(s) 928
Bme1390I CCNGG 6 cut(s) 43, 62, 218, 364, 468, 715
Bme18I GGWCC 1 cut(s) 1085
BmeT110I CYCGRG 1 cut(s) 762
BmgT120I GGNCC 3 cut(s) 39, 151, 1085
BmiI GGNNCC 2 cut(s) 240, 1086
BmrFI CCNGG 6 cut(s) 43, 62, 218, 364, 468, 715
BmsI GCATC 3 cut(s) 748, 1000, 1063
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 8 cut(s) 41, 216, 363, 466, 489, 714, 776, 1046
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 474, 1226
Bse1I ACTGG 2 cut(s) 934, 1257
Bse8I GATNNNNATC 1 cut(s) 548
BseBI CCWGG 5 cut(s) 43, 62, 218, 364, 715
BseDI CCNNGG 8 cut(s) 41, 216, 363, 466, 489, 714, 776, 1046
BseGI GGATG 4 cut(s) 325, 462, 965, 1015
BseJI GATNNNNATC 1 cut(s) 548
BseLI CCNNNNNNNGG 3 cut(s) 67, 474, 1226
BseMII CTCAG 4 cut(s) 1022, 1118, 1209, 1247
BseNI ACTGG 2 cut(s) 934, 1257
BseRI GAGGAG 3 cut(s) 641, 644, 656
BseXI GCAGC 2 cut(s) 380, 846
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 2 cut(s) 116, 531
BshFI GGCC 3 cut(s) 40, 153, 933
BshNI GGYRCC 1 cut(s) 238
BsiHKAI GWGCWC 2 cut(s) 84, 1234
BsiHKCI CYCGRG 1 cut(s) 762
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 311, 1098
BslI CCNNNNNNNGG 3 cut(s) 67, 474, 1226
BsmAI GTCTC 3 cut(s) 596, 686, 783
BsmFI GGGAC 2 cut(s) 311, 1098
BsmI GAATGC 1 cut(s) 668
BsnI GGCC 3 cut(s) 40, 153, 933
Bso31I GGTCTC 1 cut(s) 596
BsoBI CYCGRG 1 cut(s) 762
Bsp1286I GDGCHC 4 cut(s) 84, 184, 721, 1234
Bsp143I GATC 4 cut(s) 135, 549, 1146, 1236
Bsp68I TCGCGA 1 cut(s) 531
BspACI CCGC 3 cut(s) 350, 862, 1007
BspANI GGCC 3 cut(s) 40, 153, 933
BspCNI CTCAG 4 cut(s) 1023, 1117, 1208, 1246
BspFNI CGCG 2 cut(s) 116, 531
BspHI TCATGA 3 cut(s) 84, 325, 337
BspLI GGNNCC 2 cut(s) 240, 1086
BspPI GGATC 2 cut(s) 130, 1231
BspQI GCTCTTC 3 cut(s) 189, 324, 726
BspT107I GGYRCC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 596
BsrBI CCGCTC 1 cut(s) 1007
BsrI ACTGG 2 cut(s) 934, 1257
BssECI CCNNGG 8 cut(s) 41, 216, 363, 466, 489, 714, 776, 1046
BssMI GATC 4 cut(s) 135, 549, 1146, 1236
BssT1I CCWWGG 2 cut(s) 489, 776
Bst2UI CCWGG 5 cut(s) 43, 62, 218, 364, 715
Bst4CI ACNGT 5 cut(s) 54, 794, 841, 1171, 1229
Bst6I CTCTTC 4 cut(s) 189, 324, 559, 726
BstAFI CTTAAG 1 cut(s) 827
BstDEI CTNAG 7 cut(s) 132, 147, 1031, 1104, 1138, 1195, 1233
BstF5I GGATG 4 cut(s) 325, 462, 965, 1015
BstFNI CGCG 2 cut(s) 116, 531
BstKTI GATC 4 cut(s) 138, 552, 1149, 1239
BstMAI GTCTC 3 cut(s) 596, 686, 783
BstMBI GATC 4 cut(s) 135, 549, 1146, 1236
BstMWI GCNNNNNNNGC 2 cut(s) 206, 1051
BstNI CCWGG 5 cut(s) 43, 62, 218, 364, 715
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 6 cut(s) 41, 60, 216, 362, 466, 713
BstUI CGCG 2 cut(s) 116, 531
BstV1I GCAGC 2 cut(s) 380, 846
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 2 cut(s) 135, 1236
BstYI RGATCY 2 cut(s) 135, 1236
BsuI GTATCC 2 cut(s) 464, 537
BsuRI GGCC 3 cut(s) 40, 153, 933
BtsCI GGATG 4 cut(s) 325, 462, 965, 1015
BtsIMutI CAGTG 3 cut(s) 799, 1028, 1176
BtuMI TCGCGA 1 cut(s) 531
CciI TCATGA 3 cut(s) 84, 325, 337
Cfr13I GGNCC 3 cut(s) 39, 151, 1085
Csp6I GTAC 5 cut(s) 118, 539, 773, 927, 951
CviAII CATG 7 cut(s) 85, 268, 326, 338, 1117, 1144, 1190
CviQI GTAC 5 cut(s) 118, 539, 773, 927, 951
DdeI CTNAG 7 cut(s) 132, 147, 1031, 1104, 1138, 1195, 1233
DpnI GATC 4 cut(s) 137, 551, 1148, 1238
DpnII GATC 4 cut(s) 135, 549, 1146, 1236
Eam1104I CTCTTC 4 cut(s) 189, 324, 559, 726
EarI CTCTTC 4 cut(s) 189, 324, 559, 726
Eco130I CCWWGG 2 cut(s) 489, 776
Eco24I GRGCYC 2 cut(s) 184, 721
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 1085
Eco88I CYCGRG 1 cut(s) 762
EcoO109I RGGNCCY 2 cut(s) 151, 1085
EcoRI GAATTC 1 cut(s) 1019
EcoRII CCWGG 5 cut(s) 41, 60, 216, 362, 713
EcoT14I CCWWGG 2 cut(s) 489, 776
EcoT38I GRGCYC 2 cut(s) 184, 721
ErhI CCWWGG 2 cut(s) 489, 776
FaeI CATG 7 cut(s) 88, 271, 329, 341, 1120, 1147, 1193
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 2 cut(s) 311, 1098
FatI CATG 7 cut(s) 84, 267, 325, 337, 1116, 1143, 1189
FbaI TGATCA 1 cut(s) 549
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 4 cut(s) 351, 369, 860, 863
FokI GGATG 4 cut(s) 332, 449, 952, 1022
FriOI GRGCYC 2 cut(s) 184, 721
Fsp4HI GCNGC 4 cut(s) 351, 369, 860, 863
FspBI CTAG 7 cut(s) 255, 450, 875, 917, 1014, 1058, 1089
GluI GCNGC 4 cut(s) 351, 369, 860, 863
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 3 cut(s) 40, 153, 933
HapII CCGG 1 cut(s) 468
Hin1II CATG 7 cut(s) 88, 271, 329, 341, 1120, 1147, 1193
HinfI GANTC 3 cut(s) 225, 533, 1092
HpaII CCGG 1 cut(s) 468
HphI GGTGA 4 cut(s) 82, 182, 205, 635
Hpy166II GTNNAC 2 cut(s) 460, 953
Hpy188I TCNGA 6 cut(s) 58, 108, 192, 1050, 1107, 1236
Hpy188III TCNNGA 8 cut(s) 85, 326, 338, 530, 553, 617, 743, 764
Hpy8I GTNNAC 2 cut(s) 460, 953
HpyAV CCTTC 8 cut(s) 67, 220, 386, 514, 640, 682, 737, 950
HpyCH4III ACNGT 5 cut(s) 54, 794, 841, 1171, 1229
HpyCH4V TGCA 5 cut(s) 200, 666, 683, 786, 982
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 1051
HpyF3I CTNAG 7 cut(s) 132, 147, 1031, 1104, 1138, 1195, 1233
Hsp92II CATG 7 cut(s) 88, 271, 329, 341, 1120, 1147, 1193
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 4 cut(s) 135, 549, 1146, 1236
LguI GCTCTTC 3 cut(s) 189, 324, 726
LmnI GCTCC 1 cut(s) 1004
Lsp1109I GCAGC 2 cut(s) 380, 846
LweI GCATC 3 cut(s) 748, 1000, 1063
MaeI CTAG 7 cut(s) 255, 450, 875, 917, 1014, 1058, 1089
MaeIII GTNAC 1 cut(s) 835
MalI GATC 4 cut(s) 137, 551, 1148, 1238
MbiI CCGCTC 1 cut(s) 1007
MboI GATC 4 cut(s) 135, 549, 1146, 1236
MboII GAAGA 9 cut(s) 22, 121, 176, 341, 575, 576, 594, 713, 779
MflI RGATCY 2 cut(s) 135, 1236
MhlI GDGCHC 4 cut(s) 84, 184, 721, 1234
MluCI AATT 8 cut(s) 13, 246, 410, 430, 635, 814, 1019, 1108
MluI ACGCGT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 81, 297
MroXI GAANNNNTTC 2 cut(s) 14, 333
MseI TTAA 4 cut(s) 596, 828, 912, 1038
MslI CAYNNNNRTG 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 6 cut(s) 43, 62, 218, 364, 468, 715
Mva1269I GAATGC 1 cut(s) 668
MvaI CCWGG 5 cut(s) 43, 62, 218, 364, 715
MvnI CGCG 2 cut(s) 116, 531
MwoI GCNNNNNNNGC 2 cut(s) 206, 1051
NciI CCSGG 1 cut(s) 468
NdeII GATC 4 cut(s) 135, 549, 1146, 1236
NlaIII CATG 7 cut(s) 88, 271, 329, 341, 1120, 1147, 1193
NlaIV GGNNCC 2 cut(s) 240, 1086
NmuCI GTSAC 1 cut(s) 835
NruI TCGCGA 1 cut(s) 531
NspI RCATGY 1 cut(s) 271
PaeR7I CTCGAG 1 cut(s) 762
PagI TCATGA 3 cut(s) 84, 325, 337
PciSI GCTCTTC 3 cut(s) 189, 324, 726
PctI GAATGC 1 cut(s) 668
PdmI GAANNNNTTC 2 cut(s) 14, 333
PfeI GAWTC 2 cut(s) 533, 1092
PkrI GCNGC 4 cut(s) 352, 370, 861, 864
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 1085
PsiI TTATAA 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 1085
Psp6I CCWGG 5 cut(s) 41, 60, 216, 362, 713
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 5 cut(s) 41, 60, 216, 362, 713
PspN4I GGNNCC 2 cut(s) 240, 1086
PspPI GGNCC 3 cut(s) 39, 151, 1085
PspPPI RGGWCCY 1 cut(s) 1085
PsuI RGATCY 2 cut(s) 135, 1236
RruI TCGCGA 1 cut(s) 531
RsaI GTAC 5 cut(s) 119, 540, 774, 928, 952
RsaNI GTAC 5 cut(s) 118, 539, 773, 927, 951
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 3 cut(s) 189, 324, 726
SaqAI TTAA 4 cut(s) 596, 828, 912, 1038
SatI GCNGC 4 cut(s) 351, 369, 860, 863
Sau3AI GATC 4 cut(s) 135, 549, 1146, 1236
Sau96I GGNCC 3 cut(s) 39, 151, 1085
ScaI AGTACT 1 cut(s) 928
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 6 cut(s) 43, 62, 218, 364, 468, 715
SduI GDGCHC 4 cut(s) 84, 184, 721, 1234
SfaNI GCATC 3 cut(s) 748, 1000, 1063
Sfr274I CTCGAG 1 cut(s) 762
SinI GGWCC 1 cut(s) 1085
SlaI CTCGAG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 272, 762, 827
SmoI CTYRAG 3 cut(s) 272, 762, 827
Sse9I AATT 8 cut(s) 13, 246, 410, 430, 635, 814, 1019, 1108
SsiI CCGC 3 cut(s) 350, 862, 1007
SspMI CTAG 7 cut(s) 255, 450, 875, 917, 1014, 1058, 1089
StyD4I CCNGG 6 cut(s) 41, 60, 216, 362, 466, 713
StyI CCWWGG 2 cut(s) 489, 776
TaaI ACNGT 5 cut(s) 54, 794, 841, 1171, 1229
TaqI TCGA 2 cut(s) 763, 936
TaqII GACCGA 1 cut(s) 1136
TasI AATT 8 cut(s) 13, 246, 410, 430, 635, 814, 1019, 1108
TatI WGTACW 1 cut(s) 926
TauI GCSGC 2 cut(s) 353, 865
TfiI GAWTC 2 cut(s) 533, 1092
Tru1I TTAA 4 cut(s) 596, 828, 912, 1038
Tru9I TTAA 4 cut(s) 596, 828, 912, 1038
TscAI CASTG 3 cut(s) 799, 1035, 1176
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 2 cut(s) 368, 859
Tsp45I GTSAC 1 cut(s) 835
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 3 cut(s) 799, 1035, 1176
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 1 cut(s) 1085
XapI RAATTY 5 cut(s) 13, 430, 814, 1019, 1108
XceI RCATGY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 762
XmiI GTMKAC 1 cut(s) 459
XmnI GAANNNNTTC 2 cut(s) 14, 333
XspI CTAG 7 cut(s) 255, 450, 875, 917, 1014, 1058, 1089
ZrmI AGTACT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.