Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003244

Physical Location & Seq

Genomic Coordinates Reverse (-)

59714688 .. 59717997

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG411300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGTTCAAAGAAGCTCAGTCAAAGCGAGTCCCTTTTGACCACAACGTACTCGGACGCACGCTTCCATTTTACCCTAGCTGGTCCAAAGTGTACGGGAAGAACTTCTTGTACTGGTTCGGGTCAAAGCCCAGGCTGGCTATAGCCGACCCGGAAATGATCAAACAAGTCCTTATCAATACCAGTGGATCGTTTCAGAGGGTACCTTTAACTCCTTCCTCTAGGGTTCTCTTTGGAGATGGACTTCCTGCGCTCGAAGGTGAAAGATGGGCTTTCCATAGAAAAATTGTAAACCAAGCCTTCAAAATGGAGCGAGTCGAGGATTGGGTGCCACAAATTGTGGACATTACCAAGAAGATGATGGAGGAGTGGGAGGATATAAGGGGAGGAAGAGATGAGTTTGAAATGGAGGTACACAAACAAATGCATGAGGTATCAGCAGATGTTATGTCCAGAACAGTTTTCGGAAGCAGTTTTGAAGAGGGAAAGCGTATTTTCAACTTGCAAAAACTGCAAATGCATCTTTTCCTTAAGGCAGTTCAGAGCATCTATATTCCTGGATTCAGATTTTTGCCTACCAAGGATAACAGAGAGAGATGGAGACTAAATAAGGAAATCTGTGAATCAATACGGATGTTGATTGTGAATAATAGCAAAAACCTAGAGGAATCAAAAGTTCTGCTGAGTCTATTAATGTCTTCTTACAAGAATCTGGATGGTGTAGAGGAAAAACTAGGGCTACAGGAGATTATAGAAGAATGCAAGGCCTTTTACTTTGTTGGCAAGGAAACAATTGCTAATCTTTTGACTTGGTCACTTATCCTTCTGGCGCGGCATCAGGAATGGCAAAGCAAGGCTAGAGAAGAAGTGATTAGTTTCCTTTGTGGACACAATAAGCATCCAGTCGAAGAGAATTTGAACGACCTCAAGATTGTAAGCATGATAATTAACGAAGCACTTAGACTCTATCCTCCTGGTGTGCTACTAAATAGGCAAACATCAAAGAAGGTTAAGCTTGGGAGCCTGGAAATTCCTGCTGATACACAACTTGTCGTGCCCTTGATTGCTGTTCATCACGACACTGATATATGGGGTAAAGATGCCAATGAATTCAATCCATCAAGGTTCTTGGAGCCTCGAAGGCATTTAGCCTCGTTTCTTCCATTTGGTTTAGGGACCAGATACTGCCCCGGTCAGAATTTAGCACTTGTTGAAGCAAAACTGGTCTTAGCAATCATCGTCAGACACTATTCTTTCACGGTGTCACCTACATATGTCCATGCCCCAAAGTTTATGTCGGCATGCATGATGCTTCTTCTTCTTCCTCTTGCTTTTATTCTTGTCTATCTCTTAAAATTCGCGTACTCAACGTTGTGGCTCCCATGGAGAGTTCAAAAGCATTTTCAGAGGCAAGGTATTAGAGGCCCCGGCTACCGTCCGATCACCGGAAACTCGGCCGACTTTCGCCGTCTGTTTGAAGAAGCTCAGTCCAAGGCAATGCCCTTCCACCACGACATCATCCAACGGGTGGCTCCGTTCTACCACAGATGGTCCCGCATGTACGGGAAGGATTTCTTGTACTGGTTCGGGTCGAGGCCCAGGCTTCTACTGTCCGACCCGGATATGGTGAAGGAGGTGCTCATGAATACGAGTGGTTTGTATCAGAAGAACGCGTACAACCCTTCTACTAAGATCCTGTTTGCTCAGGGCCTTGCTGGGTTGGCCGGTGAGAAATGGGCTCTTCACCGGAGGATTGCAACCCGAGCCTTCACCGTGGAGAGAGTCAAGGGCTGGGTGCCTGAAATTGTGGCTACTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

605

Amino Acids

70.09

Weight (kDa)

9.51

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	28 - 439	1.7e-76	Cytochrome P450
p450	PF00067	512 - 592	6.5e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75130
fragaria_vesca	FvH4_2g40040 FvH4_2g40040 FvH4_2g40051
malus_domestica	MD08G1032800.v1.1 MD08G1032900.v1.1 MD08G1033000.v1.1 MD15G1029500.v1.1 MD15G1029600.v1.1
prunus_persica	Prupe.1G381900_v2.0.a1 Prupe.1G381900_v2.0.a1
pyrus_communis	pycom08g02610
rosa_chinensis	RchiOBHm_Chr6g0300691 RchiOBHm_Chr6g0300701 RchiOBHm_Chr6g0300711
rosa_laevigata	RLG00000011309 RLG00000011310 RLG00000011311
rosa_multiflora	Rmu_sc0004226.1_g000009 Rmu_sc0014374.1_g000005 Rmu_sc0014374.1_g000013 Rmu_sc0014374.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167490 Rroxscaffold_7G00167500 Rroxscaffold_7G00167510
rosa_rugosa	Rorug06G0298300 Rorug06G0298400 Rorug06G0298500 Rorug06G0298600
rosa_samantha	Rh6BG418400 Rh6BG418500 Rh6CG425900 Rh6DG411300 Rh6DG411400
rosa_wichuraiana	Rw0G002170 Rw6G035980 Rw6G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	199
AccB1I	GGYRCC	3 cut(s)	199, 325, 1792
AccB7I	CCANNNNNTGG	1 cut(s)	1525
AccII	CGCG	3 cut(s)	829, 1358, 1670
AciI	CCGC	2 cut(s)	829, 1552
AclI	AACGTT	1 cut(s)	1367
AclWI	GGATC	2 cut(s)	193, 1684
AcoI	YGGCCR	2 cut(s)	1452, 1719
AcsI	RAATTY	5 cut(s)	910, 1026, 1106, 1195, 1352
AfaI	GTAC	9 cut(s)	48, 92, 110, 201, 411, 1361, 1559, 1577, 1673
AfiI	CCNNNNNNNGG	3 cut(s)	1442, 1525, 1621
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	1668
AjnI	CCWGG	5 cut(s)	128, 553, 970, 1020, 1595
AluBI	AGCT	4 cut(s)	14, 78, 1012, 1481
AluI	AGCT	4 cut(s)	14, 78, 1012, 1481
Alw21I	GWGCWC	1 cut(s)	1638
Alw26I	GTCTC	1 cut(s)	592
AlwI	GGATC	2 cut(s)	193, 1684
AlwNI	CAGNNNCTG	1 cut(s)	1182
Ama87I	CYCGRG	1 cut(s)	1758
AoxI	GGCC	6 cut(s)	762, 1420, 1452, 1592, 1705, 1719
ApoI	RAATTY	5 cut(s)	910, 1026, 1106, 1195, 1352
ArsI	GACNNNNNNTTYG	2 cut(s)	1277, 1309
AseI	ATTAAT	1 cut(s)	689
Asp700I	GAANNNNTTC	2 cut(s)	101, 1568
Asp718I	GGTACC	1 cut(s)	199
AspLEI	GCGC	2 cut(s)	250, 829
AspS9I	GGNCC	6 cut(s)	81, 1173, 1421, 1548, 1593, 1705
AsuC2I	CCSGG	4 cut(s)	149, 1188, 1425, 1616
AsuHPI	GGTGA	7 cut(s)	269, 1254, 1432, 1636, 1733, 1736, 1759
AvaI	CYCGRG	1 cut(s)	1758
AvaII	GGWCC	3 cut(s)	81, 1173, 1548
BaeGI	GKGCMC	1 cut(s)	1056
BanI	GGYRCC	3 cut(s)	199, 325, 1792
BanII	GRGCYC	1 cut(s)	1738
BarI	GAAGNNNNNNTAC	2 cut(s)	1655, 1687
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	1638
BccI	CCATC	7 cut(s)	230, 258, 352, 588, 707, 1123, 1539
BceAI	ACGGC	1 cut(s)	1449
BciT130I	CCWGG	5 cut(s)	130, 555, 972, 1022, 1597
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	4 cut(s)	149, 1188, 1425, 1616
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	6 cut(s)	75, 219, 659, 731, 855, 1816
BfmI	CTRYAG	2 cut(s)	138, 737
BfrI	CTTAAG	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	1138
BisI	GCNGC	1 cut(s)	830
BlsI	GCNGC	1 cut(s)	831
Bme1390I	CCNGG	9 cut(s)	130, 149, 555, 972, 1022, 1188, 1425, 1597, 1616
Bme18I	GGWCC	3 cut(s)	81, 1173, 1548
BmeT110I	CYCGRG	1 cut(s)	1758
BmgT120I	GGNCC	6 cut(s)	81, 1173, 1421, 1548, 1593, 1705
BmrFI	CCNGG	9 cut(s)	130, 149, 555, 972, 1022, 1188, 1425, 1597, 1616
BmsI	GCATC	6 cut(s)	526, 552, 841, 904, 1087, 1296
BpiI	GAAGAC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	1701
BpuEI	CTTGAG	1 cut(s)	908
BpuMI	CCSGG	4 cut(s)	149, 1188, 1425, 1616
BsaJI	CCNNGG	8 cut(s)	128, 576, 1186, 1379, 1423, 1488, 1595, 1770
BsaWI	WCCGGW	2 cut(s)	1442, 1743
Bsc4I	CCNNNNNNNGG	3 cut(s)	1442, 1525, 1621
Bse118I	RCCGGY	1 cut(s)	1721
Bse1I	ACTGG	6 cut(s)	116, 180, 899, 1224, 1583, 1816
Bse3DI	GCAATG	1 cut(s)	1500
BseBI	CCWGG	5 cut(s)	130, 555, 972, 1022, 1597
BseDI	CCNNGG	8 cut(s)	128, 576, 1186, 1379, 1423, 1488, 1595, 1770
BseGI	GGATG	4 cut(s)	636, 718, 895, 1515
BseLI	CCNNNNNNNGG	3 cut(s)	1442, 1525, 1621
BseMI	GCAATG	1 cut(s)	1500
BseMII	CTCAG	4 cut(s)	29, 671, 1496, 1715
BseNI	ACTGG	6 cut(s)	116, 180, 899, 1224, 1583, 1816
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	1056
BseX3I	CGGCCG	1 cut(s)	1452
BseYI	CCCAGC	2 cut(s)	1712, 1788
Bsh1236I	CGCG	3 cut(s)	829, 1358, 1670
Bsh1285I	CGRYCG	1 cut(s)	1455
BshFI	GGCC	6 cut(s)	764, 1422, 1454, 1594, 1707, 1721
BshNI	GGYRCC	3 cut(s)	199, 325, 1792
BsiEI	CGRYCG	1 cut(s)	1455
BsiHKAI	GWGCWC	1 cut(s)	1638
BsiHKCI	CYCGRG	1 cut(s)	1758
BsiSI	CCGG	7 cut(s)	149, 1188, 1425, 1443, 1616, 1722, 1744
BslFI	GGGAC	3 cut(s)	14, 1186, 1534
BslI	CCNNNNNNNGG	3 cut(s)	1442, 1525, 1621
BsmAI	GTCTC	1 cut(s)	592
BsmFI	GGGAC	3 cut(s)	14, 1186, 1534
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	6 cut(s)	764, 1422, 1454, 1594, 1707, 1721
BsoBI	CYCGRG	1 cut(s)	1758
Bsp1286I	GDGCHC	3 cut(s)	1056, 1638, 1738
Bsp143I	GATC	4 cut(s)	156, 185, 1437, 1689
Bsp19I	CCATGG	1 cut(s)	1379
BspACI	CCGC	2 cut(s)	829, 1552
BspANI	GGCC	6 cut(s)	764, 1422, 1454, 1594, 1707, 1721
BspCNI	CTCAG	4 cut(s)	28, 672, 1495, 1714
BspFNI	CGCG	3 cut(s)	829, 1358, 1670
BspHI	TCATGA	1 cut(s)	1638
BspPI	GGATC	2 cut(s)	193, 1684
BspQI	GCTCTTC	1 cut(s)	1743
BspT107I	GGYRCC	3 cut(s)	199, 325, 1792
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	1500
BsrFI	RCCGGY	1 cut(s)	1721
BsrI	ACTGG	6 cut(s)	116, 180, 899, 1224, 1583, 1816
BssAI	RCCGGY	1 cut(s)	1721
BssECI	CCNNGG	8 cut(s)	128, 576, 1186, 1379, 1423, 1488, 1595, 1770
BssMI	GATC	4 cut(s)	156, 185, 1437, 1689
BssT1I	CCWWGG	3 cut(s)	576, 1379, 1488
Bst2UI	CCWGG	5 cut(s)	130, 555, 972, 1022, 1597
Bst4CI	ACNGT	5 cut(s)	457, 1258, 1433, 1608, 1771
Bst6I	CTCTTC	4 cut(s)	382, 471, 900, 1743
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	59, 135, 1300
BstDEI	CTNAG	7 cut(s)	15, 680, 956, 1225, 1482, 1686, 1701
BstDSI	CCRYGG	2 cut(s)	1379, 1770
BstF5I	GGATG	4 cut(s)	636, 718, 895, 1515
BstFNI	CGCG	3 cut(s)	829, 1358, 1670
BstHHI	GCGC	2 cut(s)	250, 829
BstKTI	GATC	4 cut(s)	159, 188, 1440, 1692
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	4 cut(s)	156, 185, 1437, 1689
BstMCI	CGRYCG	1 cut(s)	1455
BstMWI	GCNNNNNNNGC	4 cut(s)	508, 1138, 1718, 1760
BstNI	CCWGG	5 cut(s)	130, 555, 972, 1022, 1597
BstNSI	RCATGY	2 cut(s)	1302, 1558
BstSCI	CCNGG	9 cut(s)	128, 147, 553, 970, 1020, 1186, 1423, 1595, 1614
BstSFI	CTRYAG	2 cut(s)	138, 737
BstSLI	GKGCMC	1 cut(s)	1056
BstUI	CGCG	3 cut(s)	829, 1358, 1670
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	1689
BstYI	RGATCY	1 cut(s)	1689
BstZI	CGGCCG	1 cut(s)	1452
BsuRI	GGCC	6 cut(s)	764, 1422, 1454, 1594, 1707, 1721
BtgI	CCRYGG	2 cut(s)	1379, 1770
BtsCI	GGATG	4 cut(s)	636, 718, 895, 1515
BtsIMutI	CAGTG	2 cut(s)	187, 1077
Cac8I	GCNNGC	3 cut(s)	59, 135, 1300
CaiI	CAGNNNCTG	1 cut(s)	1182
CciI	TCATGA	1 cut(s)	1638
CfoI	GCGC	2 cut(s)	250, 829
Cfr10I	RCCGGY	1 cut(s)	1721
Cfr13I	GGNCC	6 cut(s)	81, 1173, 1421, 1548, 1593, 1705
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	9 cut(s)	47, 91, 109, 200, 410, 1360, 1558, 1576, 1672
CspCI	CAANNNNNGTGG	2 cut(s)	163, 198
CviAII	CATG	8 cut(s)	425, 937, 1277, 1299, 1303, 1380, 1555, 1639
CviQI	GTAC	9 cut(s)	47, 91, 109, 200, 410, 1360, 1558, 1576, 1672
DdeI	CTNAG	7 cut(s)	15, 680, 956, 1225, 1482, 1686, 1701
DpnI	GATC	4 cut(s)	158, 187, 1439, 1691
DpnII	GATC	4 cut(s)	156, 185, 1437, 1689
EaeI	YGGCCR	2 cut(s)	1452, 1719
EagI	CGGCCG	1 cut(s)	1452
Eam1104I	CTCTTC	4 cut(s)	382, 471, 900, 1743
EarI	CTCTTC	4 cut(s)	382, 471, 900, 1743
EclXI	CGGCCG	1 cut(s)	1452
Eco130I	CCWWGG	3 cut(s)	576, 1379, 1488
Eco147I	AGGCCT	1 cut(s)	764
Eco24I	GRGCYC	1 cut(s)	1738
Eco47I	GGWCC	3 cut(s)	81, 1173, 1548
Eco52I	CGGCCG	1 cut(s)	1452
Eco88I	CYCGRG	1 cut(s)	1758
EcoO109I	RGGNCCY	2 cut(s)	1421, 1705
EcoRI	GAATTC	1 cut(s)	1106
EcoRII	CCWGG	5 cut(s)	128, 553, 970, 1020, 1595
EcoT14I	CCWWGG	3 cut(s)	576, 1379, 1488
EcoT22I	ATGCAT	3 cut(s)	426, 519, 1304
EcoT38I	GRGCYC	1 cut(s)	1738
ErhI	CCWWGG	3 cut(s)	576, 1379, 1488
FaeI	CATG	8 cut(s)	428, 940, 1280, 1302, 1306, 1383, 1558, 1642
FalI	AAGNNNNNCTT	6 cut(s)	89, 121, 253, 285, 1556, 1588
FaqI	GGGAC	3 cut(s)	14, 1186, 1534
FatI	CATG	8 cut(s)	424, 936, 1276, 1298, 1302, 1379, 1554, 1638
FauI	CCCGC	1 cut(s)	1559
FauNDI	CATATG	1 cut(s)	1270
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	830
FokI	GGATG	4 cut(s)	643, 725, 882, 1502
FriOI	GRGCYC	1 cut(s)	1738
Fsp4HI	GCNGC	1 cut(s)	830
FspBI	CTAG	6 cut(s)	75, 219, 659, 731, 855, 1816
GlaI	GCGC	2 cut(s)	249, 828
GluI	GCNGC	1 cut(s)	830
GsaI	CCCAGC	2 cut(s)	1716, 1792
HaeIII	GGCC	6 cut(s)	764, 1422, 1454, 1594, 1707, 1721
HapII	CCGG	7 cut(s)	149, 1188, 1425, 1443, 1616, 1722, 1744
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	2 cut(s)	250, 829
Hin1II	CATG	8 cut(s)	428, 940, 1280, 1302, 1306, 1383, 1558, 1642
Hin6I	GCGC	2 cut(s)	248, 827
HinP1I	GCGC	2 cut(s)	248, 827
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	9 cut(s)	27, 312, 558, 620, 665, 682, 706, 960, 1779
HpaII	CCGG	7 cut(s)	149, 1188, 1425, 1443, 1616, 1722, 1744
HphI	GGTGA	7 cut(s)	269, 1254, 1432, 1636, 1733, 1736, 1759
Hpy166II	GTNNAC	5 cut(s)	91, 289, 340, 412, 884
Hpy188III	TCNNGA	6 cut(s)	450, 710, 836, 925, 1073, 1639
Hpy8I	GTNNAC	5 cut(s)	91, 289, 340, 412, 884
HpyCH4III	ACNGT	5 cut(s)	457, 1258, 1433, 1608, 1771
HpyCH4IV	ACGT	2 cut(s)	45, 1367
HpyCH4V	TGCA	7 cut(s)	424, 502, 511, 517, 759, 1302, 1754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	508, 1138, 1718, 1760
HpyF3I	CTNAG	7 cut(s)	15, 680, 956, 1225, 1482, 1686, 1701
HpySE526I	ACGT	2 cut(s)	45, 1367
Hsp92II	CATG	8 cut(s)	428, 940, 1280, 1302, 1306, 1383, 1558, 1642
HspAI	GCGC	2 cut(s)	248, 827
KpnI	GGTACC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	156, 185, 1437, 1689
LguI	GCTCTTC	1 cut(s)	1743
LmnI	GCTCC	5 cut(s)	307, 1017, 1129, 1380, 1534
LweI	GCATC	6 cut(s)	526, 552, 841, 904, 1087, 1296
MaeI	CTAG	6 cut(s)	75, 219, 659, 731, 855, 1816
MaeII	ACGT	2 cut(s)	45, 1367
MaeIII	GTNAC	2 cut(s)	810, 1260
MalI	GATC	4 cut(s)	158, 187, 1439, 1691
MboI	GATC	4 cut(s)	156, 185, 1437, 1689
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	1 cut(s)	1689
MhlI	GDGCHC	3 cut(s)	1056, 1638, 1738
MluI	ACGCGT	1 cut(s)	1668
MlyI	GAGTC	5 cut(s)	36, 321, 691, 954, 1788
MmeI	TCCRAC	2 cut(s)	1543, 1635
Mph1103I	ATGCAT	3 cut(s)	426, 519, 1304
MroXI	GAANNNNTTC	2 cut(s)	101, 1568
MseI	TTAA	6 cut(s)	206, 528, 689, 945, 1008, 1349
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	7 cut(s)	149, 1188, 1425, 1443, 1616, 1722, 1744
MspR9I	CCNGG	9 cut(s)	130, 149, 555, 972, 1022, 1188, 1425, 1597, 1616
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	5 cut(s)	130, 555, 972, 1022, 1597
MvnI	CGCG	3 cut(s)	829, 1358, 1670
MwoI	GCNNNNNNNGC	4 cut(s)	508, 1138, 1718, 1760
NciI	CCSGG	4 cut(s)	149, 1188, 1425, 1616
NcoI	CCATGG	1 cut(s)	1379
NdeI	CATATG	1 cut(s)	1270
NdeII	GATC	4 cut(s)	156, 185, 1437, 1689
NlaIII	CATG	8 cut(s)	428, 940, 1280, 1302, 1306, 1383, 1558, 1642
NmeAIII	GCCGAG	1 cut(s)	1430
NmuCI	GTSAC	2 cut(s)	810, 1260
NsiI	ATGCAT	3 cut(s)	426, 519, 1304
NspI	RCATGY	2 cut(s)	1302, 1558
PaeI	GCATGC	1 cut(s)	1302
PagI	TCATGA	1 cut(s)	1638
PceI	AGGCCT	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	1743
PctI	GAATGC	1 cut(s)	761
PdmI	GAANNNNTTC	2 cut(s)	101, 1568
PfeI	GAWTC	4 cut(s)	558, 620, 665, 706
PflFI	GACNNNGTC	1 cut(s)	808
PflMI	CCANNNNNTGG	1 cut(s)	1525
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	831
PleI	GAGTC	5 cut(s)	35, 320, 690, 954, 1787
PpsI	GAGTC	5 cut(s)	35, 320, 690, 954, 1787
PshBI	ATTAAT	1 cut(s)	689
Psp1406I	AACGTT	1 cut(s)	1367
Psp6I	CCWGG	5 cut(s)	128, 553, 970, 1020, 1595
PspFI	CCCAGC	2 cut(s)	1712, 1788
PspGI	CCWGG	5 cut(s)	128, 553, 970, 1020, 1595
PspPI	GGNCC	6 cut(s)	81, 1173, 1421, 1548, 1593, 1705
PsrI	GAACNNNNNNTAC	2 cut(s)	92, 124
PstNI	CAGNNNCTG	1 cut(s)	1182
PsuI	RGATCY	1 cut(s)	1689
PsyI	GACNNNGTC	1 cut(s)	808
RsaI	GTAC	9 cut(s)	48, 92, 110, 201, 411, 1361, 1559, 1577, 1673
RsaNI	GTAC	9 cut(s)	47, 91, 109, 200, 410, 1360, 1558, 1576, 1672
SapI	GCTCTTC	1 cut(s)	1743
SaqAI	TTAA	6 cut(s)	206, 528, 689, 945, 1008, 1349
SatI	GCNGC	1 cut(s)	830
Sau3AI	GATC	4 cut(s)	156, 185, 1437, 1689
Sau96I	GGNCC	6 cut(s)	81, 1173, 1421, 1548, 1593, 1705
SchI	GAGTC	5 cut(s)	36, 321, 691, 954, 1788
ScrFI	CCNGG	9 cut(s)	130, 149, 555, 972, 1022, 1188, 1425, 1597, 1616
SduI	GDGCHC	3 cut(s)	1056, 1638, 1738
SfaNI	GCATC	6 cut(s)	526, 552, 841, 904, 1087, 1296
SfcI	CTRYAG	2 cut(s)	138, 737
SinI	GGWCC	3 cut(s)	81, 1173, 1548
SmlI	CTYRAG	2 cut(s)	527, 923
SmoI	CTYRAG	2 cut(s)	527, 923
SphI	GCATGC	1 cut(s)	1302
SseBI	AGGCCT	1 cut(s)	764
SsiI	CCGC	2 cut(s)	829, 1552
SspMI	CTAG	6 cut(s)	75, 219, 659, 731, 855, 1816
StuI	AGGCCT	1 cut(s)	764
StyD4I	CCNGG	9 cut(s)	128, 147, 553, 970, 1020, 1186, 1423, 1595, 1614
StyI	CCWWGG	3 cut(s)	576, 1379, 1488
TaaI	ACNGT	5 cut(s)	457, 1258, 1433, 1608, 1771
TaiI	ACGT	2 cut(s)	48, 1370
TaqI	TCGA	5 cut(s)	252, 315, 903, 1135, 1589
TatI	WGTACW	2 cut(s)	108, 1575
TauI	GCSGC	1 cut(s)	832
TfiI	GAWTC	4 cut(s)	558, 620, 665, 706
Tru1I	TTAA	6 cut(s)	206, 528, 689, 945, 1008, 1349
Tru9I	TTAA	6 cut(s)	206, 528, 689, 945, 1008, 1349
TscAI	CASTG	2 cut(s)	187, 1084
TseFI	GTSAC	2 cut(s)	810, 1260
Tsp45I	GTSAC	2 cut(s)	810, 1260
TspDTI	ATGAA	3 cut(s)	1058, 1119, 1655
TspGWI	ACGGA	2 cut(s)	643, 1521
TspRI	CASTG	2 cut(s)	187, 1084
Tth111I	GACNNNGTC	1 cut(s)	808
Van91I	CCANNNNNTGG	1 cut(s)	1525
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	81, 1173, 1548
VspI	ATTAAT	1 cut(s)	689
XapI	RAATTY	5 cut(s)	910, 1026, 1106, 1195, 1352
XceI	RCATGY	2 cut(s)	1302, 1558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmnI	GAANNNNTTC	2 cut(s)	101, 1568
XspI	CTAG	6 cut(s)	75, 219, 659, 731, 855, 1816
Zsp2I	ATGCAT	3 cut(s)	426, 519, 1304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.