Rroxscaffold_7G00167500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
8617642 .. 8621081
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167500.1

Sequence Viewer

Length: 1611 bp
ATGTTCAAAGAAGCTCTGTCAAAGCGAGTCCCTTTTGACCACAACGTACTCGGACGCACGCTTCCATTTTACCCTAGCTGGTCCGAAGTGTACGGGAAGAACTTCTTGTACTGGTTCGGGTCAAAGCCCAGGCTGGCTATAGCCGACCCGGAAATGATCAAACAAGTCCTTATCAATACCAGTGGATCGTTTCAGAGGGTACCTTTAACTCCTTCCTCTAGGGTTCTGTTTGGAGATGGACTTCCTGCGCTCGAAGGCGAAAGATGGGCTTTCCATAGAAAAATTGTAAACCAAGCGTTCAAAATGGAGCGAGTCGAGGATTGGGTGCCACAAATTGTGGACATTACCATGAAGATGATGGAGGAGTGGGAGGGTATAAGGGGAGGAAGAGATGAGTTTGAAATGGAGGTACACAAACAAATGCATGAGGTATCAGCAGATGTTATGTCCAGAACAGTTTTCGGAAGCAGTTTTGAAGAGGGAAAGCGTATTTTCAAATTGCAAAAACAGCAAATGCATCTTTTCCTTAAGGCAGTTCAAAGCATCTATATTCCTGGATTCAGATTTTTGCCTACCAAGGATAACAGAGAAAGGTGGAGACTGAATAAGGAAATCTGTGAATCAATACGGATGTTGATTGCGAATAATAGCAAAAACCTAGAGGAATCAAAAGTTCTGCTGAGTCTATTAATGTCTTCTTACAAGAATCTGGATGGTGTAGAGGAAAAACTAGGGCTACAGGAGATTATAGAAGAATGCAAGGCCTTTTACTTTGTTGGCAAGGAAACAATTGCTAATCTTTTGACTTGGTCACTTATCCTTCTGGCGCGGCATCAGGAATGGCAAAGCAAGGCTAGAGAAGAAGTGATTAGTTTCCTTTGTGGACACAATAAGCATCCAGTCGAAGAGAATTTGAACGACCTCAAGATTGTAAGCATGATAATTAACGAAGCACTTAGACTCTATCCTCCTGGTGTGCTACTAAATAGGCAAACGTCAAAGAAGGTTAAGCTTGGGAGCCTGGAAATTCCTGCTGATACACAACTTGTCGTGCCCTTGATTGCTGTTCATCACGACACTGATATATGGGGTAAAGATGCTAATGAATTCAATCCATCAAGGTTCTTGGAGCCTCGAAGGCATTTAGCCTCGTTTCTTCCATTTGGTTTAGGGACCAGATACTGCCCCGGTCAGAATTTAGCACTTGTTGAAGCAAAACTGGTCTTAGCAATCATCGTCAGACACTATTCTTTCACGGTGTCACCTACATATGTCCATGCCCCAAAGTTGCTTCTACTGTCCGACCCGGATATGGTGAAGGAGGTGCTCATGAATACGAGTGGTTTGTATCAGAAGAACACGTACAACCCTTCTACTAAGATCCTGTTTGCTCAGGGCCTTGCTGGGTTGGCCGGGCTGGGTGCTGAAATTGTGGCTAGTGCCACAAACATGCTTGAGAAATGGGGGAGTTTGAAAGGGGACAAAGATGAGTTTGAGTTGGACGTTCATGAAGAACTTCATGAACTCTTGGCGGATATCATATCTAGGGCAGCCTTTGGAAGTAGTTTTGAGGAAGGAAGCGTATATTCAAATTACAAGACCAGCAGATGA

Protein Analysis

536

Amino Acids

61.23

Weight (kDa)

6.76

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 28 - 422 9.3e-76 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 2 cut(s) 199, 325
AccII CGCG 1 cut(s) 829
AciI CCGC 2 cut(s) 829, 1532
AclWI GGATC 2 cut(s) 193, 1375
AcoI YGGCCR 1 cut(s) 1410
AcsI RAATTY 4 cut(s) 910, 1026, 1106, 1195
AfaI GTAC 6 cut(s) 48, 92, 110, 201, 411, 1364
AfiI CCNNNNNNNGG 1 cut(s) 1312
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 1359
AjnI CCWGG 4 cut(s) 128, 553, 970, 1020
AluBI AGCT 3 cut(s) 14, 78, 1012
AluI AGCT 3 cut(s) 14, 78, 1012
Alw21I GWGCWC 1 cut(s) 1329
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 2 cut(s) 193, 1375
AlwNI CAGNNNCTG 1 cut(s) 1182
AoxI GGCC 3 cut(s) 762, 1396, 1410
ApeKI GCWGC 1 cut(s) 1550
ApoI RAATTY 4 cut(s) 910, 1026, 1106, 1195
AseI ATTAAT 1 cut(s) 689
Asp700I GAANNNNTTC 2 cut(s) 101, 1515
Asp718I GGTACC 1 cut(s) 199
AspLEI GCGC 2 cut(s) 250, 829
AspS9I GGNCC 3 cut(s) 81, 1173, 1396
AsuC2I CCSGG 4 cut(s) 149, 1188, 1307, 1414
AsuHPI GGTGA 2 cut(s) 1254, 1327
AvaII GGWCC 2 cut(s) 81, 1173
BaeGI GKGCMC 1 cut(s) 1056
BanI GGYRCC 2 cut(s) 199, 325
BarI GAAGNNNNNNTAC 2 cut(s) 1346, 1378
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 1329
BbvI GCAGC 1 cut(s) 1562
BccI CCATC 5 cut(s) 230, 258, 352, 707, 1123
BciT130I CCWGG 4 cut(s) 130, 555, 972, 1022
BclI TGATCA 1 cut(s) 156
BcnI CCSGG 4 cut(s) 149, 1188, 1307, 1414
BcoDI GTCTC 1 cut(s) 592
BfaI CTAG 7 cut(s) 75, 219, 659, 731, 855, 1437, 1545
BfmI CTRYAG 2 cut(s) 138, 737
BfrI CTTAAG 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 1138
BisI GCNGC 2 cut(s) 830, 1551
BlsI GCNGC 2 cut(s) 831, 1552
Bme1390I CCNGG 8 cut(s) 130, 149, 555, 972, 1022, 1188, 1307, 1414
Bme18I GGWCC 2 cut(s) 81, 1173
BmgT120I GGNCC 3 cut(s) 81, 1173, 1396
BmiI GGNNCC 5 cut(s) 201, 327, 1019, 1131, 1174
BmrFI CCNGG 8 cut(s) 130, 149, 555, 972, 1022, 1188, 1307, 1414
BmsI GCATC 5 cut(s) 526, 552, 841, 904, 1087
BpiI GAAGAC 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 1392
BpuEI CTTGAG 2 cut(s) 908, 1475
BpuMI CCSGG 4 cut(s) 149, 1188, 1307, 1414
BsaAI YACGTR 1 cut(s) 1362
BsaJI CCNNGG 3 cut(s) 128, 576, 1186
Bsc4I CCNNNNNNNGG 1 cut(s) 1312
Bse1I ACTGG 4 cut(s) 116, 180, 899, 1224
BseBI CCWGG 4 cut(s) 130, 555, 972, 1022
BseDI CCNNGG 3 cut(s) 128, 576, 1186
BseGI GGATG 3 cut(s) 636, 718, 895
BseLI CCNNNNNNNGG 1 cut(s) 1312
BseMII CTCAG 2 cut(s) 671, 1406
BseNI ACTGG 4 cut(s) 116, 180, 899, 1224
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 1056
BseXI GCAGC 1 cut(s) 1562
BseYI CCCAGC 2 cut(s) 1403, 1417
Bsh1236I CGCG 1 cut(s) 829
BshFI GGCC 3 cut(s) 764, 1398, 1412
BshNI GGYRCC 2 cut(s) 199, 325
BsiHKAI GWGCWC 1 cut(s) 1329
BsiSI CCGG 4 cut(s) 149, 1188, 1307, 1413
BslFI GGGAC 3 cut(s) 14, 1186, 1493
BslI CCNNNNNNNGG 1 cut(s) 1312
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 3 cut(s) 14, 1186, 1493
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 3 cut(s) 764, 1398, 1412
Bsp1286I GDGCHC 2 cut(s) 1056, 1329
Bsp143I GATC 3 cut(s) 156, 185, 1380
BspACI CCGC 2 cut(s) 829, 1532
BspANI GGCC 3 cut(s) 764, 1398, 1412
BspCNI CTCAG 2 cut(s) 672, 1405
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 3 cut(s) 1329, 1507, 1519
BspLI GGNNCC 5 cut(s) 201, 327, 1019, 1131, 1174
BspPI GGATC 2 cut(s) 193, 1375
BspT107I GGYRCC 2 cut(s) 199, 325
BspTI CTTAAG 1 cut(s) 527
BsrI ACTGG 4 cut(s) 116, 180, 899, 1224
BssECI CCNNGG 3 cut(s) 128, 576, 1186
BssMI GATC 3 cut(s) 156, 185, 1380
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 4 cut(s) 130, 555, 972, 1022
Bst4CI ACNGT 3 cut(s) 457, 1258, 1299
Bst6I CTCTTC 3 cut(s) 382, 471, 900
BstAFI CTTAAG 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 1362
BstC8I GCNNGC 2 cut(s) 59, 135
BstDEI CTNAG 5 cut(s) 680, 956, 1225, 1377, 1392
BstF5I GGATG 3 cut(s) 636, 718, 895
BstFNI CGCG 1 cut(s) 829
BstHHI GCGC 2 cut(s) 250, 829
BstKTI GATC 3 cut(s) 159, 188, 1383
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 3 cut(s) 156, 185, 1380
BstMWI GCNNNNNNNGC 3 cut(s) 508, 1138, 1409
BstNI CCWGG 4 cut(s) 130, 555, 972, 1022
BstNSI RCATGY 1 cut(s) 1453
BstSCI CCNGG 8 cut(s) 128, 147, 553, 970, 1020, 1186, 1305, 1412
BstSFI CTRYAG 2 cut(s) 138, 737
BstSLI GKGCMC 1 cut(s) 1056
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 1 cut(s) 1562
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 1380
BstYI RGATCY 1 cut(s) 1380
BsuRI GGCC 3 cut(s) 764, 1398, 1412
BtsCI GGATG 3 cut(s) 636, 718, 895
BtsIMutI CAGTG 2 cut(s) 187, 1077
Cac8I GCNNGC 2 cut(s) 59, 135
CaiI CAGNNNCTG 1 cut(s) 1182
CciI TCATGA 3 cut(s) 1329, 1507, 1519
CfoI GCGC 2 cut(s) 250, 829
Cfr13I GGNCC 3 cut(s) 81, 1173, 1396
CseI GACGC 1 cut(s) 63
Csp6I GTAC 6 cut(s) 47, 91, 109, 200, 410, 1363
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 8 cut(s) 349, 425, 937, 1277, 1330, 1450, 1508, 1520
CviQI GTAC 6 cut(s) 47, 91, 109, 200, 410, 1363
DdeI CTNAG 5 cut(s) 680, 956, 1225, 1377, 1392
DpnI GATC 3 cut(s) 158, 187, 1382
DpnII GATC 3 cut(s) 156, 185, 1380
EaeI YGGCCR 1 cut(s) 1410
Eam1104I CTCTTC 3 cut(s) 382, 471, 900
EarI CTCTTC 3 cut(s) 382, 471, 900
EciI GGCGGA 1 cut(s) 1547
Eco130I CCWWGG 1 cut(s) 576
Eco147I AGGCCT 1 cut(s) 764
Eco32I GATATC 1 cut(s) 1537
Eco47I GGWCC 2 cut(s) 81, 1173
EcoO109I RGGNCCY 1 cut(s) 1396
EcoRI GAATTC 1 cut(s) 1106
EcoRII CCWGG 4 cut(s) 128, 553, 970, 1020
EcoRV GATATC 1 cut(s) 1537
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 2 cut(s) 426, 519
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 8 cut(s) 352, 428, 940, 1280, 1333, 1453, 1511, 1523
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 253, 285
FaqI GGGAC 3 cut(s) 14, 1186, 1493
FatI CATG 8 cut(s) 348, 424, 936, 1276, 1329, 1449, 1507, 1519
FauNDI CATATG 1 cut(s) 1270
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 830, 1551
FokI GGATG 3 cut(s) 643, 725, 882
Fsp4HI GCNGC 2 cut(s) 830, 1551
FspBI CTAG 7 cut(s) 75, 219, 659, 731, 855, 1437, 1545
GlaI GCGC 2 cut(s) 249, 828
GluI GCNGC 2 cut(s) 830, 1551
GsaI CCCAGC 2 cut(s) 1407, 1421
HaeIII GGCC 3 cut(s) 764, 1398, 1412
HapII CCGG 4 cut(s) 149, 1188, 1307, 1413
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 250, 829
Hin1II CATG 8 cut(s) 352, 428, 940, 1280, 1333, 1453, 1511, 1523
Hin6I GCGC 2 cut(s) 248, 827
HinP1I GCGC 2 cut(s) 248, 827
HindIII AAGCTT 1 cut(s) 1010
HinfI GANTC 8 cut(s) 27, 312, 558, 620, 665, 682, 706, 960
HpaII CCGG 4 cut(s) 149, 1188, 1307, 1413
HphI GGTGA 2 cut(s) 1254, 1327
Hpy166II GTNNAC 5 cut(s) 91, 289, 340, 412, 884
Hpy188I TCNGA 9 cut(s) 53, 85, 195, 464, 563, 1194, 1241, 1303, 1353
Hpy188III TCNNGA 8 cut(s) 450, 710, 836, 925, 1073, 1330, 1508, 1520
Hpy8I GTNNAC 5 cut(s) 91, 289, 340, 412, 884
HpyAV CCTTC 8 cut(s) 222, 248, 830, 997, 1131, 1312, 1380, 1568
HpyCH4III ACNGT 3 cut(s) 457, 1258, 1299
HpyCH4IV ACGT 4 cut(s) 45, 995, 1361, 1503
HpyCH4V TGCA 4 cut(s) 424, 502, 517, 759
HpyF10VI GCNNNNNNNGC 3 cut(s) 508, 1138, 1409
HpyF3I CTNAG 5 cut(s) 680, 956, 1225, 1377, 1392
HpySE526I ACGT 4 cut(s) 45, 995, 1361, 1503
Hsp92II CATG 8 cut(s) 352, 428, 940, 1280, 1333, 1453, 1511, 1523
HspAI GCGC 2 cut(s) 248, 827
KpnI GGTACC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 3 cut(s) 156, 185, 1380
LmnI GCTCC 3 cut(s) 307, 1017, 1129
Lsp1109I GCAGC 1 cut(s) 1562
LweI GCATC 5 cut(s) 526, 552, 841, 904, 1087
MaeI CTAG 7 cut(s) 75, 219, 659, 731, 855, 1437, 1545
MaeII ACGT 4 cut(s) 45, 995, 1361, 1503
MaeIII GTNAC 2 cut(s) 810, 1260
MalI GATC 3 cut(s) 158, 187, 1382
MboI GATC 3 cut(s) 156, 185, 1380
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 1 cut(s) 1380
MhlI GDGCHC 2 cut(s) 1056, 1329
MlyI GAGTC 4 cut(s) 36, 321, 691, 954
MmeI TCCRAC 2 cut(s) 1326, 1479
Mph1103I ATGCAT 2 cut(s) 426, 519
MroXI GAANNNNTTC 2 cut(s) 101, 1515
MseI TTAA 5 cut(s) 206, 528, 689, 945, 1008
MslI CAYNNNNRTG 3 cut(s) 347, 353, 1448
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 4 cut(s) 149, 1188, 1307, 1413
MspR9I CCNGG 8 cut(s) 130, 149, 555, 972, 1022, 1188, 1307, 1414
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 761
MvaI CCWGG 4 cut(s) 130, 555, 972, 1022
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 3 cut(s) 508, 1138, 1409
NciI CCSGG 4 cut(s) 149, 1188, 1307, 1414
NdeI CATATG 1 cut(s) 1270
NdeII GATC 3 cut(s) 156, 185, 1380
NlaIII CATG 8 cut(s) 352, 428, 940, 1280, 1333, 1453, 1511, 1523
NlaIV GGNNCC 5 cut(s) 201, 327, 1019, 1131, 1174
NmuCI GTSAC 2 cut(s) 810, 1260
NsiI ATGCAT 2 cut(s) 426, 519
NspI RCATGY 1 cut(s) 1453
PagI TCATGA 3 cut(s) 1329, 1507, 1519
PceI AGGCCT 1 cut(s) 764
PctI GAATGC 1 cut(s) 761
PdmI GAANNNNTTC 2 cut(s) 101, 1515
PfeI GAWTC 4 cut(s) 558, 620, 665, 706
PflFI GACNNNGTC 1 cut(s) 808
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 2 cut(s) 831, 1552
PleI GAGTC 4 cut(s) 35, 320, 690, 954
PpsI GAGTC 4 cut(s) 35, 320, 690, 954
Ppu21I YACGTR 1 cut(s) 1362
PshBI ATTAAT 1 cut(s) 689
Psp6I CCWGG 4 cut(s) 128, 553, 970, 1020
PspFI CCCAGC 2 cut(s) 1403, 1417
PspGI CCWGG 4 cut(s) 128, 553, 970, 1020
PspN4I GGNNCC 5 cut(s) 201, 327, 1019, 1131, 1174
PspPI GGNCC 3 cut(s) 81, 1173, 1396
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
PstNI CAGNNNCTG 1 cut(s) 1182
PsuI RGATCY 1 cut(s) 1380
PsyI GACNNNGTC 1 cut(s) 808
RsaI GTAC 6 cut(s) 48, 92, 110, 201, 411, 1364
RsaNI GTAC 6 cut(s) 47, 91, 109, 200, 410, 1363
RseI CAYNNNNRTG 3 cut(s) 347, 353, 1448
SaqAI TTAA 5 cut(s) 206, 528, 689, 945, 1008
SatI GCNGC 2 cut(s) 830, 1551
Sau3AI GATC 3 cut(s) 156, 185, 1380
Sau96I GGNCC 3 cut(s) 81, 1173, 1396
SchI GAGTC 4 cut(s) 36, 321, 691, 954
ScrFI CCNGG 8 cut(s) 130, 149, 555, 972, 1022, 1188, 1307, 1414
SduI GDGCHC 2 cut(s) 1056, 1329
SfaNI GCATC 5 cut(s) 526, 552, 841, 904, 1087
SfcI CTRYAG 2 cut(s) 138, 737
SinI GGWCC 2 cut(s) 81, 1173
SmiMI CAYNNNNRTG 3 cut(s) 347, 353, 1448
SmlI CTYRAG 3 cut(s) 527, 923, 1454
SmoI CTYRAG 3 cut(s) 527, 923, 1454
SseBI AGGCCT 1 cut(s) 764
SsiI CCGC 2 cut(s) 829, 1532
SspMI CTAG 7 cut(s) 75, 219, 659, 731, 855, 1437, 1545
StuI AGGCCT 1 cut(s) 764
StyD4I CCNGG 8 cut(s) 128, 147, 553, 970, 1020, 1186, 1305, 1412
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 3 cut(s) 457, 1258, 1299
TaiI ACGT 4 cut(s) 48, 998, 1364, 1506
TaqI TCGA 4 cut(s) 252, 315, 903, 1135
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 832
TfiI GAWTC 4 cut(s) 558, 620, 665, 706
Tru1I TTAA 5 cut(s) 206, 528, 689, 945, 1008
Tru9I TTAA 5 cut(s) 206, 528, 689, 945, 1008
TscAI CASTG 2 cut(s) 187, 1084
TseFI GTSAC 2 cut(s) 810, 1260
TseI GCWGC 1 cut(s) 1550
Tsp45I GTSAC 2 cut(s) 810, 1260
TspDTI ATGAA 8 cut(s) 365, 1058, 1119, 1346, 1496, 1508, 1524, 1536
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 2 cut(s) 187, 1084
Tth111I GACNNNGTC 1 cut(s) 808
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 81, 1173
VspI ATTAAT 1 cut(s) 689
XapI RAATTY 4 cut(s) 910, 1026, 1106, 1195
XceI RCATGY 1 cut(s) 1453
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmnI GAANNNNTTC 2 cut(s) 101, 1515
XspI CTAG 7 cut(s) 75, 219, 659, 731, 855, 1437, 1545
Zsp2I ATGCAT 2 cut(s) 426, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.