Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003244

Physical Location & Seq

Genomic Coordinates Reverse (-)

60567410 .. 60569606

Gene Structure 2197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTACGGGAAGACTTTCCTCTACTGGTTCGGGCCCAATCCCAGGCTGGCAATATCCGACCCGGATTTGATCAAAGAAGTCCTTGTCAATTCCAGTGGGTCGTTTCAAAAGATACCCTTTACCCCTTTAACCAAAAACCTCTTCGGAGAAGGACTCGTAGGCCTCGAAGGCGATGATTGGGCCTTTCATAGAAGGATCGTCAACCAGGCCTTCAAAATGGAGCGGGTCAAGGGTTGGGTGCCTGAAATTGTGGGGAGTGCCATGAAGGTGTTGGAGAAGTGGGAGGGTATAAGAGGAGAGAAAGATGAGTTTGAGATGGATGTGCACAAAGAATTTCATGATCTTTCTGCTGATGTTATATCGAGAACAGCTTTTGGAAGCAGTTTTGAGGAGGGAAAGCGAATTTTCAACTTGCAAGAACAACAAATGCATCTTTTCTCTAAGGCGGTTAGGAGCATCTACATTCCTGGATTCAGGTTTTTACCCACCAAGAATAACAGAGAAAGGTGGAGACTACAAAAGGAAACTAGTGAATCAATACGGATGTTGATCTTGAATAGTCCCAAAACAAGAGAAGATTCAACAAATCTACTCAGTCTGTTAATGTCTTCTTACAAGAACCAGAGTGGTGAAGAAGAAAAATTAGGGTTAGAGGATATAATAGCTGAATGCAAGACCTTCTACCTTGCAGGAAGTGAAACAACTGCTTCTCTTTTGACTTGGGCACTTCTCCTTCTAGCCCGCCATCAGGATTGGCAAAGCAAGGCTAGGGAAGAAGTGATTCGCGCTAGCGGAGACAATAAGCTTCCTACTGCAGAGAATTTGAATGATCTTAAGATTGTAAGCCTGATAGTTAACGAAACACTTAGACTCTACCCTCCAGCTGTGATGCTAATGAGGCAAACATCAAAGAAGGTTAAGCTTGGGGACCTTGACATTCCTGCTCACACACAACTCTACTTGGCCTTGACTGCTGTCCATCACGACACTGAGATATGGGGAGAAGATGCTAATGAGTTCAATCCCTTGAGGTTTTCAGAGCCTCGAAAGCATTTAGCCTCATTCCTTCCATTTGGTCTGGGGCCTAGAATCTGCCAGGTCAAAACTTGGCTCTGGTTGAAGCAAAACTGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

378

Amino Acids

43.49

Weight (kDa)

7.14

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 365	2.1e-73	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75130
fragaria_vesca	FvH4_2g40040 FvH4_2g40040 FvH4_2g40051
malus_domestica	MD08G1032800.v1.1 MD08G1032900.v1.1 MD08G1033000.v1.1 MD15G1029500.v1.1 MD15G1029600.v1.1
prunus_persica	Prupe.1G381900_v2.0.a1 Prupe.1G381900_v2.0.a1
pyrus_communis	pycom08g02610
rosa_chinensis	RchiOBHm_Chr6g0300691 RchiOBHm_Chr6g0300701 RchiOBHm_Chr6g0300711
rosa_laevigata	RLG00000011309 RLG00000011310 RLG00000011311
rosa_multiflora	Rmu_sc0004226.1_g000009 Rmu_sc0014374.1_g000005 Rmu_sc0014374.1_g000013 Rmu_sc0014374.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167490 Rroxscaffold_7G00167500 Rroxscaffold_7G00167510
rosa_rugosa	Rorug06G0298300 Rorug06G0298400 Rorug06G0298500 Rorug06G0298600
rosa_samantha	Rh6BG418400 Rh6BG418500 Rh6CG425900 Rh6DG411300 Rh6DG411400
rosa_wichuraiana	Rw0G002170 Rw6G035980 Rw6G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccBSI	CCGCTC	1 cut(s)	223
AccII	CGCG	1 cut(s)	786
AciI	CCGC	4 cut(s)	223, 446, 742, 792
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	3 cut(s)	332, 402, 820
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	42, 748
AflII	CTTAAG	1 cut(s)	833
AgsI	TTSAA	8 cut(s)	107, 214, 409, 556, 582, 826, 1021, 1120
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	4 cut(s)	41, 204, 466, 1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	5 cut(s)	371, 665, 805, 884, 922
AluI	AGCT	5 cut(s)	371, 665, 805, 884, 922
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	505, 789
Alw44I	GTGCAC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	6 cut(s)	32, 160, 180, 207, 963, 1082
ApaI	GGGCCC	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	332, 402, 820
Asp700I	GAANNNNTTC	2 cut(s)	14, 780
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	5 cut(s)	32, 33, 180, 928, 1082
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	641
AsuNHI	GCTAGC	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	928
BaeGI	GKGCMC	3 cut(s)	36, 327, 727
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	36
BbsI	GAAGAC	2 cut(s)	17, 600
Bbv12I	GWGCWC	1 cut(s)	327
BccI	CCATC	3 cut(s)	310, 753, 987
BciT130I	CCWGG	4 cut(s)	43, 206, 468, 1097
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	505, 789
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	5 cut(s)	528, 737, 768, 789, 1086
BfmI	CTRYAG	1 cut(s)	813
BfrI	CTTAAG	1 cut(s)	833
BglI	GCCNNNNNGGC	1 cut(s)	168
Bme1390I	CCNGG	5 cut(s)	43, 62, 206, 468, 1097
Bme18I	GGWCC	1 cut(s)	928
BmgT120I	GGNCC	5 cut(s)	32, 33, 180, 928, 1082
BmiI	GGNNCC	4 cut(s)	34, 240, 929, 1083
BmrFI	CCNGG	5 cut(s)	43, 62, 206, 468, 1097
BmsI	GCATC	4 cut(s)	439, 465, 879, 997
BmtI	GCTAGC	1 cut(s)	792
BoxI	GACNNNNGTC	1 cut(s)	974
BpiI	GAAGAC	2 cut(s)	17, 600
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpmI	CTGGAG	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	1048
BpuMI	CCSGG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 748
Bse1I	ACTGG	3 cut(s)	29, 93, 1133
Bse8I	GATNNNNATC	1 cut(s)	548
BseBI	CCWGG	4 cut(s)	43, 206, 468, 1097
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	325, 549
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	42, 748
BseMII	CTCAG	2 cut(s)	607, 981
BseNI	ACTGG	3 cut(s)	29, 93, 1133
BseRI	GAGGAG	2 cut(s)	309, 404
BseSI	GKGCMC	3 cut(s)	36, 327, 727
Bsh1236I	CGCG	1 cut(s)	786
BshFI	GGCC	6 cut(s)	34, 162, 182, 209, 965, 1084
BshNI	GGYRCC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	2 cut(s)	546, 941
BslI	CCNNNNNNNGG	2 cut(s)	42, 748
BsmAI	GTCTC	2 cut(s)	505, 789
BsmFI	GGGAC	2 cut(s)	546, 941
BsmI	GAATGC	1 cut(s)	674
BsnI	GGCC	6 cut(s)	34, 162, 182, 209, 965, 1084
Bsp120I	GGGCCC	1 cut(s)	32
Bsp1286I	GDGCHC	3 cut(s)	36, 327, 727
Bsp143I	GATC	5 cut(s)	69, 195, 340, 549, 829
BspACI	CCGC	4 cut(s)	223, 446, 742, 792
BspANI	GGCC	6 cut(s)	34, 162, 182, 209, 965, 1084
BspCNI	CTCAG	2 cut(s)	606, 982
BspFNI	CGCG	1 cut(s)	786
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	4 cut(s)	34, 240, 929, 1083
BspMAI	CTGCAG	1 cut(s)	817
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	238
BspTI	CTTAAG	1 cut(s)	833
BsrBI	CCGCTC	1 cut(s)	223
BsrI	ACTGG	3 cut(s)	29, 93, 1133
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	5 cut(s)	69, 195, 340, 549, 829
Bst2UI	CCWGG	4 cut(s)	43, 206, 468, 1097
Bst6I	CTCTTC	1 cut(s)	146
BstAFI	CTTAAG	1 cut(s)	833
BstC8I	GCNNGC	3 cut(s)	48, 742, 790
BstDEI	CTNAG	5 cut(s)	441, 593, 866, 990, 1134
BstF5I	GGATG	2 cut(s)	325, 549
BstFNI	CGCG	1 cut(s)	786
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	5 cut(s)	72, 198, 343, 552, 832
BstMAI	GTCTC	2 cut(s)	505, 789
BstMBI	GATC	5 cut(s)	69, 195, 340, 549, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 898, 971, 1048
BstNI	CCWGG	4 cut(s)	43, 206, 468, 1097
BstPAI	GACNNNNGTC	1 cut(s)	974
BstSCI	CCNGG	5 cut(s)	41, 60, 204, 466, 1095
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	3 cut(s)	36, 327, 727
BstUI	CGCG	1 cut(s)	786
BstV2I	GAAGAC	2 cut(s)	17, 600
BsuRI	GGCC	6 cut(s)	34, 162, 182, 209, 965, 1084
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	325, 549
BtsIMutI	CAGTG	2 cut(s)	100, 987
Cac8I	GCNNGC	3 cut(s)	48, 742, 790
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	788
Cfr13I	GGNCC	5 cut(s)	32, 33, 180, 928, 1082
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	2 cut(s)	262, 338
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	5 cut(s)	441, 593, 866, 990, 1134
DpnI	GATC	5 cut(s)	71, 197, 342, 551, 831
DpnII	GATC	5 cut(s)	69, 195, 340, 549, 829
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco147I	AGGCCT	2 cut(s)	162, 209
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	928
EcoO109I	RGGNCCY	2 cut(s)	928, 1082
EcoRII	CCWGG	4 cut(s)	41, 204, 466, 1095
EcoT22I	ATGCAT	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	2 cut(s)	265, 341
FaiI	YATR	7 cut(s)	189, 263, 290, 339, 359, 659, 997
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 101, 133
FaqI	GGGAC	2 cut(s)	546, 941
FatI	CATG	2 cut(s)	261, 337
FauI	CCCGC	2 cut(s)	216, 749
FbaI	TGATCA	1 cut(s)	69
FokI	GGATG	2 cut(s)	332, 556
FriOI	GRGCYC	1 cut(s)	36
FspBI	CTAG	5 cut(s)	528, 737, 768, 789, 1086
GlaI	GCGC	1 cut(s)	787
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	6 cut(s)	34, 162, 182, 209, 965, 1084
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	788
Hin1II	CATG	2 cut(s)	265, 341
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HincII	GTYRAC	2 cut(s)	202, 856
HindII	GTYRAC	2 cut(s)	202, 856
HindIII	AAGCTT	2 cut(s)	803, 920
HinfI	GANTC	7 cut(s)	153, 471, 533, 578, 781, 870, 1089
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	3 cut(s)	202, 325, 856
Hpy188I	TCNGA	3 cut(s)	58, 146, 1039
Hpy188III	TCNNGA	5 cut(s)	338, 363, 553, 749, 983
Hpy8I	GTNNAC	3 cut(s)	202, 325, 856
HpyAV	CCTTC	9 cut(s)	143, 161, 186, 220, 259, 688, 743, 907, 1076
HpyCH4V	TGCA	6 cut(s)	325, 415, 430, 672, 689, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 898, 971, 1048
HpyF3I	CTNAG	5 cut(s)	441, 593, 866, 990, 1134
Hsp92II	CATG	2 cut(s)	265, 341
HspAI	GCGC	1 cut(s)	786
Ksp22I	TGATCA	1 cut(s)	69
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	5 cut(s)	69, 195, 340, 549, 829
LmnI	GCTCC	2 cut(s)	220, 453
LweI	GCATC	4 cut(s)	439, 465, 879, 997
MaeI	CTAG	5 cut(s)	528, 737, 768, 789, 1086
MalI	GATC	5 cut(s)	71, 197, 342, 551, 831
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	5 cut(s)	69, 195, 340, 549, 829
MboII	GAAGA	8 cut(s)	22, 133, 587, 600, 644, 647, 785, 1016
MhlI	GDGCHC	3 cut(s)	36, 327, 727
MluCI	AATT	6 cut(s)	88, 246, 332, 402, 641, 820
MlyI	GAGTC	2 cut(s)	147, 864
MmeI	TCCRAC	2 cut(s)	81, 252
Mph1103I	ATGCAT	1 cut(s)	432
MroXI	GAANNNNTTC	2 cut(s)	14, 780
MseI	TTAA	5 cut(s)	128, 602, 834, 855, 918
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	1 cut(s)	833
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	5 cut(s)	43, 62, 206, 468, 1097
Mva1269I	GAATGC	1 cut(s)	674
MvaI	CCWGG	4 cut(s)	43, 206, 468, 1097
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	4 cut(s)	168, 898, 971, 1048
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	5 cut(s)	69, 195, 340, 549, 829
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	2 cut(s)	265, 341
NlaIV	GGNNCC	4 cut(s)	34, 240, 929, 1083
NsiI	ATGCAT	1 cut(s)	432
PagI	TCATGA	1 cut(s)	337
PceI	AGGCCT	2 cut(s)	162, 209
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	1 cut(s)	674
PdmI	GAANNNNTTC	2 cut(s)	14, 780
PfeI	GAWTC	5 cut(s)	471, 533, 578, 781, 1089
PfoI	TCCNGGA	1 cut(s)	466
PleI	GAGTC	2 cut(s)	147, 864
PpsI	GAGTC	2 cut(s)	147, 864
PpuMI	RGGWCCY	1 cut(s)	928
PshAI	GACNNNNGTC	1 cut(s)	974
Psp5II	RGGWCCY	1 cut(s)	928
Psp6I	CCWGG	4 cut(s)	41, 204, 466, 1095
PspGI	CCWGG	4 cut(s)	41, 204, 466, 1095
PspN4I	GGNNCC	4 cut(s)	34, 240, 929, 1083
PspOMI	GGGCCC	1 cut(s)	32
PspPI	GGNCC	5 cut(s)	32, 33, 180, 928, 1082
PspPPI	RGGWCCY	1 cut(s)	928
PstI	CTGCAG	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	5 cut(s)	128, 602, 834, 855, 918
Sau3AI	GATC	5 cut(s)	69, 195, 340, 549, 829
Sau96I	GGNCC	5 cut(s)	32, 33, 180, 928, 1082
SchI	GAGTC	2 cut(s)	147, 864
ScrFI	CCNGG	5 cut(s)	43, 62, 206, 468, 1097
SduI	GDGCHC	3 cut(s)	36, 327, 727
SfaNI	GCATC	4 cut(s)	439, 465, 879, 997
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	833, 1027
SmoI	CTYRAG	2 cut(s)	833, 1027
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	6 cut(s)	88, 246, 332, 402, 641, 820
SseBI	AGGCCT	2 cut(s)	162, 209
SsiI	CCGC	4 cut(s)	223, 446, 742, 792
SspMI	CTAG	5 cut(s)	528, 737, 768, 789, 1086
StuI	AGGCCT	2 cut(s)	162, 209
StyD4I	CCNGG	5 cut(s)	41, 60, 204, 466, 1095
TaqI	TCGA	3 cut(s)	165, 362, 1045
TasI	AATT	6 cut(s)	88, 246, 332, 402, 641, 820
TfiI	GAWTC	5 cut(s)	471, 533, 578, 781, 1089
Tru1I	TTAA	5 cut(s)	128, 602, 834, 855, 918
Tru9I	TTAA	5 cut(s)	128, 602, 834, 855, 918
TscAI	CASTG	2 cut(s)	100, 994
TspDTI	ATGAA	3 cut(s)	176, 278, 326
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	2 cut(s)	100, 994
Vha464I	CTTAAG	1 cut(s)	833
VneI	GTGCAC	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	928
XapI	RAATTY	3 cut(s)	332, 402, 820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	43, 268
XmnI	GAANNNNTTC	2 cut(s)	14, 780
XspI	CTAG	5 cut(s)	528, 737, 768, 789, 1086
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.