Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003244

Physical Location & Seq

Genomic Coordinates Forward (+)

45123759 .. 45127457

Gene Structure 3699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0298500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCCGATTTATTTACTGTCGAGAGGGAAGAAATTTTGGATTGTTGCGAAAGGTTGTGGGTGGGAAGAATTGATTATGGTGTGTGAATCATATACTGTGGGGGATGTAAAGAAGATGGTTGAGAATTTTGCTCAGGTGAAGAGTGAAGGACTGGTGCTTTTTCGGGGCGGAAATGATATGGTTTGTCTTGATGATGATGGGAAGCCCCTTGTGTTTTATGATGTAGTAGAGAAATCTACGATTTGGATACTTGGTTTGGCTGTGAAATTGACCATCAAGATGCCACAGGCTGGAGATGTGGTGACCCTCAGTGCTTATAGGGTCAACACCGTAAAGGACATCAAGTCTTATATATTTGAGAAGATGGGGATCCCATTTAGCAGTCAGAAGCTTTTCTATAGGGGGATTTTTCTTGCTGATGAGGCTGATTCCCTAGATGGCTACAACATGGAAGGTAATTGTGATATTTTTGCAACTTTTGGATCAGGAGATGATGATGAACAAGTTCTAGATGTTGAAAAAATAAAGTTAATTTTCAAGGGAGACTCCCATTTGCATGTGTTCAAGGTGGAATGCTCAATTTACGAAAAATCAGAAAGCGAGTTGGATGTCGAAGAGTCGGAGGAGGAAACATTTGTACTCCAGTTGATATCTTCGAATACCATATTGGACGTCAAGACAGCAGTTCAGAGCCTGAAGAGCTTCCCAGTTTGTTCCCAGCAGCTATACTGTCATGAAAGATTGCTGAAAGATTGGAAAAATCTTTGGGAGAGCAGTGTTGTTACAAAGTGGTTATTTGTTAGCTCTCAATTAACAATGTTCTTTGAGACACCAAACCATAAGAAGGTTGTAATCAAACCTAGCAGTAGAAATGCAGTTCATAACATTTTGTACATGATTCCCAAACAAGCCCTCGACAAAATCAATTGGAAGCCAAGGCTCTTCCTTGATGGTAATGTTCTCCCAGAGCACAAAACCCTGGCTCAGTTGGGTGTTCAGTCAGGTGTGGTTTTATGGTTGGACGGTCTTGTGCAGATTGATGTCACCAGGCCAAATGGTGCAACCATTCATGTGAATATGAACCTTTCTTACAAAATCAAAGCTGTCAAGGAGAAAATTGAACAAGAATGTGGTATCTCTATTGGACTACAAAGACTTACTTATGGTGGTGATGAACTTAATGATGATATAACTTTAGGGCAGTATGAGGAAGTTTTGGGTAATCTGTGGGCTTTAAGGTGGAAGTTTTGTCATAGTTCCTGGTCGTTCTTCTATCCTTCATACCAAGTCAACAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

433

Amino Acids

49.32

Weight (kDa)

5.44

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	90 - 155	7.6e-08	Ubiquitin family
ubiquitin	PF00240	351 - 402	2.1e-09	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75130
fragaria_vesca	FvH4_2g40040 FvH4_2g40040 FvH4_2g40051
malus_domestica	MD08G1032800.v1.1 MD08G1032900.v1.1 MD08G1033000.v1.1 MD15G1029500.v1.1 MD15G1029600.v1.1
prunus_persica	Prupe.1G381900_v2.0.a1 Prupe.1G381900_v2.0.a1
pyrus_communis	pycom08g02610
rosa_chinensis	RchiOBHm_Chr6g0300691 RchiOBHm_Chr6g0300701 RchiOBHm_Chr6g0300711
rosa_laevigata	RLG00000011309 RLG00000011310 RLG00000011311
rosa_multiflora	Rmu_sc0004226.1_g000009 Rmu_sc0014374.1_g000005 Rmu_sc0014374.1_g000013 Rmu_sc0014374.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167490 Rroxscaffold_7G00167500 Rroxscaffold_7G00167510
rosa_rugosa	Rorug06G0298300 Rorug06G0298400 Rorug06G0298500 Rorug06G0298600
rosa_samantha	Rh6BG418400 Rh6BG418500 Rh6CG425900 Rh6DG411300 Rh6DG411400
rosa_wichuraiana	Rw0G002170 Rw6G035980 Rw6G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	675
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	3 cut(s)	364, 377, 490
AcsI	RAATTY	2 cut(s)	32, 124
AcuI	CTGAAG	1 cut(s)	716
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	2 cut(s)	639, 893
AfiI	CCNNNNNNNGG	2 cut(s)	290, 844
AgsI	TTSAA	4 cut(s)	518, 538, 565, 1121
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	978, 1046, 1259
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	5 cut(s)	391, 702, 724, 804, 1103
AluI	AGCT	5 cut(s)	391, 702, 724, 804, 1103
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	2 cut(s)	537, 821
AlwI	GGATC	3 cut(s)	364, 377, 490
AlwNI	CAGNNNCTG	1 cut(s)	694
AoxI	GGCC	1 cut(s)	1049
ApeKI	GCWGC	1 cut(s)	721
ApoI	RAATTY	2 cut(s)	32, 124
Asp700I	GAANNNNTTC	3 cut(s)	392, 504, 701
AsuHPI	GGTGA	4 cut(s)	148, 313, 1036, 1181
AsuII	TTCGAA	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	6 cut(s)	109, 191, 281, 358, 431, 944
BciT130I	CCWGG	3 cut(s)	980, 1048, 1261
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	537, 821
BfaI	CTAG	3 cut(s)	434, 509, 861
BfmI	CTRYAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	1296
BisI	GCNGC	1 cut(s)	722
BlsI	GCNGC	1 cut(s)	723
Bme1390I	CCNGG	3 cut(s)	980, 1048, 1261
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	3 cut(s)	980, 1048, 1261
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	701
BpmI	CTGGAG	2 cut(s)	312, 626
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	656
BsaBI	GATNNNNATC	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	935, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 844
Bse1I	ACTGG	3 cut(s)	156, 643, 707
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	3 cut(s)	980, 1048, 1261
BseDI	CCNNGG	2 cut(s)	935, 978
BseGI	GGATG	2 cut(s)	109, 613
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	290, 844
BseMII	CTCAG	3 cut(s)	146, 322, 998
BseNI	ACTGG	3 cut(s)	156, 643, 707
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	1 cut(s)	733
BseYI	CCCAGC	1 cut(s)	717
BsgI	GTGCAG	1 cut(s)	1052
BshFI	GGCC	1 cut(s)	1051
BsiHKAI	GWGCWC	1 cut(s)	972
BslI	CCNNNNNNNGG	2 cut(s)	290, 844
BsmAI	GTCTC	2 cut(s)	537, 821
BsmI	GAATGC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	1051
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	3 cut(s)	369, 482, 1296
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	1051
BspCNI	CTCAG	3 cut(s)	145, 321, 997
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	3 cut(s)	364, 377, 490
BspQI	GCTCTTC	2 cut(s)	692, 947
BspT104I	TTCGAA	1 cut(s)	656
BsrGI	TGTACA	1 cut(s)	891
BsrI	ACTGG	3 cut(s)	156, 643, 707
BssECI	CCNNGG	2 cut(s)	935, 978
BssMI	GATC	3 cut(s)	369, 482, 1296
BssNI	GRCGYC	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	935
Bst2UI	CCWGG	3 cut(s)	980, 1048, 1261
Bst4CI	ACNGT	5 cut(s)	18, 97, 331, 731, 1025
Bst6I	CTCTTC	4 cut(s)	134, 609, 692, 947
BstACI	GRCGYC	1 cut(s)	672
BstAUI	TGTACA	1 cut(s)	891
BstBI	TTCGAA	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	132, 308, 984
BstEII	GGTNACC	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	109, 613
BstKTI	GATC	3 cut(s)	372, 485, 1299
BstMAI	GTCTC	2 cut(s)	537, 821
BstMBI	GATC	3 cut(s)	369, 482, 1296
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 699
BstNI	CCWGG	3 cut(s)	980, 1048, 1261
BstNSI	RCATGY	1 cut(s)	560
BstPI	GGTNACC	1 cut(s)	301
BstSCI	CCNGG	3 cut(s)	978, 1046, 1259
BstSFI	CTRYAG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	733
BstX2I	RGATCY	2 cut(s)	369, 1296
BstYI	RGATCY	2 cut(s)	369, 1296
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	1051
BtsCI	GGATG	2 cut(s)	109, 613
BtsI	GCAGTG	1 cut(s)	781
BtsIMutI	CAGTG	2 cut(s)	316, 781
CaiI	CAGNNNCTG	1 cut(s)	694
CciI	TCATGA	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	638, 892
CviAII	CATG	5 cut(s)	448, 557, 734, 895, 1070
CviQI	GTAC	2 cut(s)	638, 892
DdeI	CTNAG	3 cut(s)	132, 308, 984
DpnI	GATC	3 cut(s)	371, 484, 1298
DpnII	GATC	3 cut(s)	369, 482, 1296
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	4 cut(s)	134, 609, 692, 947
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	4 cut(s)	134, 609, 692, 947
EciI	GGCGGA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	935
Eco32I	GATATC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	716
Eco91I	GGTNACC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	301
EcoRII	CCWGG	3 cut(s)	978, 1046, 1259
EcoRV	GATATC	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	935
ErhI	CCWWGG	1 cut(s)	935
FaeI	CATG	5 cut(s)	451, 560, 737, 898, 1073
FalI	AAGNNNNNCTT	2 cut(s)	1144, 1176
FatI	CATG	5 cut(s)	447, 556, 733, 894, 1069
Fnu4HI	GCNGC	1 cut(s)	722
FokI	GGATG	2 cut(s)	116, 620
Fsp4HI	GCNGC	1 cut(s)	722
FspBI	CTAG	3 cut(s)	434, 509, 861
GluI	GCNGC	1 cut(s)	722
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	2 cut(s)	312, 626
HaeIII	GGCC	1 cut(s)	1051
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	5 cut(s)	451, 560, 737, 898, 1073
HincII	GTYRAC	2 cut(s)	325, 1291
HindII	GTYRAC	2 cut(s)	325, 1291
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	86, 428, 545, 617, 898
HphI	GGTGA	4 cut(s)	148, 313, 1036, 1181
Hpy166II	GTNNAC	2 cut(s)	325, 1291
Hpy188I	TCNGA	5 cut(s)	387, 595, 622, 690, 1301
Hpy188III	TCNNGA	7 cut(s)	21, 188, 277, 486, 509, 676, 734
Hpy8I	GTNNAC	2 cut(s)	325, 1291
HpyAV	CCTTC	4 cut(s)	140, 446, 838, 1287
HpyCH4III	ACNGT	5 cut(s)	18, 97, 331, 731, 1025
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	5 cut(s)	473, 556, 875, 1033, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 699
HpyF3I	CTNAG	3 cut(s)	132, 308, 984
HpySE526I	ACGT	1 cut(s)	672
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	5 cut(s)	451, 560, 737, 898, 1073
Kzo9I	GATC	3 cut(s)	369, 482, 1296
LguI	GCTCTTC	2 cut(s)	692, 947
Lsp1109I	GCAGC	1 cut(s)	733
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	3 cut(s)	434, 509, 861
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	3 cut(s)	301, 781, 1042
MalI	GATC	3 cut(s)	371, 484, 1298
MboI	GATC	3 cut(s)	369, 482, 1296
MfeI	CAATTG	1 cut(s)	925
MflI	RGATCY	2 cut(s)	369, 1296
MhlI	GDGCHC	1 cut(s)	972
MlyI	GAGTC	2 cut(s)	539, 626
MmeI	TCCRAC	3 cut(s)	585, 600, 999
MnlI	CCTC	7 cut(s)	17, 317, 415, 616, 619, 923, 1201
MroXI	GAANNNNTTC	3 cut(s)	392, 504, 701
MseI	TTAA	4 cut(s)	530, 812, 1179, 1235
MslI	CAYNNNNRTG	3 cut(s)	278, 555, 1070
MspR9I	CCNGG	3 cut(s)	980, 1048, 1261
MunI	CAATTG	1 cut(s)	925
Mva1269I	GAATGC	1 cut(s)	578
MvaI	CCWGG	3 cut(s)	980, 1048, 1261
MwoI	GCNNNNNNNGC	2 cut(s)	422, 699
NdeII	GATC	3 cut(s)	369, 482, 1296
NlaIII	CATG	5 cut(s)	451, 560, 737, 898, 1073
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	2 cut(s)	301, 1042
NspI	RCATGY	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	656
PagI	TCATGA	1 cut(s)	733
PciSI	GCTCTTC	2 cut(s)	692, 947
PctI	GAATGC	1 cut(s)	578
PdmI	GAANNNNTTC	3 cut(s)	392, 504, 701
PfeI	GAWTC	3 cut(s)	86, 428, 898
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	723
PleI	GAGTC	2 cut(s)	539, 625
PpsI	GAGTC	2 cut(s)	539, 625
Psp6I	CCWGG	3 cut(s)	978, 1046, 1259
PspEI	GGTNACC	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	3 cut(s)	978, 1046, 1259
PspN4I	GGNNCC	1 cut(s)	371
PsrI	GAACNNNNNNTAC	2 cut(s)	1073, 1105
PstNI	CAGNNNCTG	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	369, 1296
RsaI	GTAC	2 cut(s)	639, 893
RsaNI	GTAC	2 cut(s)	638, 892
RseI	CAYNNNNRTG	3 cut(s)	278, 555, 1070
SapI	GCTCTTC	2 cut(s)	692, 947
SaqAI	TTAA	4 cut(s)	530, 812, 1179, 1235
SatI	GCNGC	1 cut(s)	722
Sau3AI	GATC	3 cut(s)	369, 482, 1296
SchI	GAGTC	2 cut(s)	539, 626
ScrFI	CCNGG	3 cut(s)	980, 1048, 1261
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	397
SfuI	TTCGAA	1 cut(s)	656
SmiMI	CAYNNNNRTG	3 cut(s)	278, 555, 1070
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	3 cut(s)	434, 509, 861
StyD4I	CCNGG	3 cut(s)	978, 1046, 1259
StyI	CCWWGG	1 cut(s)	935
TaaI	ACNGT	5 cut(s)	18, 97, 331, 731, 1025
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	4 cut(s)	20, 612, 656, 915
TatI	WGTACW	2 cut(s)	637, 891
TfiI	GAWTC	3 cut(s)	86, 428, 898
Tru1I	TTAA	4 cut(s)	530, 812, 1179, 1235
Tru9I	TTAA	4 cut(s)	530, 812, 1179, 1235
TscAI	CASTG	2 cut(s)	316, 781
TseFI	GTSAC	2 cut(s)	301, 1042
TseI	GCWGC	1 cut(s)	721
Tsp45I	GTSAC	2 cut(s)	301, 1042
TspDTI	ATGAA	7 cut(s)	513, 750, 869, 1058, 1094, 1188, 1269
TspRI	CASTG	2 cut(s)	316, 781
Van91I	CCANNNNNTGG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	32, 124
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	560
XmnI	GAANNNNTTC	3 cut(s)	392, 504, 701
XspI	CTAG	3 cut(s)	434, 509, 861
ZraI	GACGTC	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.