Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003244

Physical Location & Seq

Genomic Coordinates Forward (+)

8626946 .. 8630586

Gene Structure 3641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGAAGCAGGTGCGGTCACTATGGCTCACACTCGAACACCGAGCAGCAATACTGCAATCGGGGCATTTGAAACCGAAGGGCCGGGGAAAATTCCCACTCCACTCCTGAAAAAGAAGGGACCATTATATCTCATTACTTTTATAATGTGGGAAACACTAACAAGGGTTAAACTAGGTGGTAGTCCTGGCCTCGACCTTCCTGCTGGTACAGAGCTGTACTCAGCCTTGATTGCTCTGCAACACGACACTGAGATTTGGGGAGCGGATGCTAGTGAATTCAATCCACTGAGATTTAACGAGCCTCGGAAGCATCTAGCTTCACACTTCCCATTTGGGTTGGGACCTAGAATCTGTGCAGCTCAGAATTTTGCAATGACCGAGCTAAAAGTAATCTTAGCCATGATCGTTCAGCATTATTCTTTCACAGTGTCGCCAACTTATGTTCATGCCCTAGTTATGTCTGTAAATGTTCAGCCTCAATACGGTGCTCAGATCCTCTTTAGCAGGATTTCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

173

Amino Acids

18.84

Weight (kDa)

7.92

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	53 - 147	1.1e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75130
fragaria_vesca	FvH4_2g40040 FvH4_2g40040 FvH4_2g40051
malus_domestica	MD08G1032800.v1.1 MD08G1032900.v1.1 MD08G1033000.v1.1 MD15G1029500.v1.1 MD15G1029600.v1.1
prunus_persica	Prupe.1G381900_v2.0.a1 Prupe.1G381900_v2.0.a1
pyrus_communis	pycom08g02610
rosa_chinensis	RchiOBHm_Chr6g0300691 RchiOBHm_Chr6g0300701 RchiOBHm_Chr6g0300711
rosa_laevigata	RLG00000011309 RLG00000011310 RLG00000011311
rosa_multiflora	Rmu_sc0004226.1_g000009 Rmu_sc0014374.1_g000005 Rmu_sc0014374.1_g000013 Rmu_sc0014374.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167490 Rroxscaffold_7G00167500 Rroxscaffold_7G00167510
rosa_rugosa	Rorug06G0298300 Rorug06G0298400 Rorug06G0298500 Rorug06G0298600
rosa_samantha	Rh6BG418400 Rh6BG418500 Rh6CG425900 Rh6DG411300 Rh6DG411400
rosa_wichuraiana	Rw0G002170 Rw6G035980 Rw6G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AccBSI	CCGCTC	1 cut(s)	266
AciI	CCGC	3 cut(s)	5, 17, 266
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	3 cut(s)	93, 278, 367
AfaI	GTAC	2 cut(s)	211, 221
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	74, 283
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	4 cut(s)	217, 320, 362, 385
AluI	AGCT	4 cut(s)	217, 320, 362, 385
Alw21I	GWGCWC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	2 cut(s)	83, 190
ApeKI	GCWGC	2 cut(s)	48, 359
ApoI	RAATTY	3 cut(s)	93, 278, 367
AspS9I	GGNCC	3 cut(s)	83, 122, 344
AsuC2I	CCSGG	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	122, 344
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	60, 371
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	5 cut(s)	176, 273, 317, 348, 455
BfuAI	ACCTGC	1 cut(s)	2
BisI	GCNGC	2 cut(s)	49, 360
BlsI	GCNGC	2 cut(s)	50, 361
Bme1390I	CCNGG	2 cut(s)	87, 189
Bme18I	GGWCC	2 cut(s)	122, 344
BmgT120I	GGNCC	3 cut(s)	83, 122, 344
BmiI	GGNNCC	2 cut(s)	123, 345
BmrFI	CCNGG	2 cut(s)	87, 189
BmsI	GCATC	2 cut(s)	259, 322
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	86, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	86, 305
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	5 cut(s)	237, 243, 281, 377, 506
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	60, 371
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	85, 192
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	135, 357
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	135, 357
BsnI	GGCC	2 cut(s)	85, 192
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	405, 495
BspACI	CCGC	3 cut(s)	5, 17, 266
BspANI	GGCC	2 cut(s)	85, 192
BspCNI	CTCAG	5 cut(s)	236, 244, 282, 376, 505
BspLI	GGNNCC	2 cut(s)	123, 345
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	1 cut(s)	490
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	2 cut(s)	86, 305
BssMI	GATC	2 cut(s)	405, 495
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	430, 488
BstDEI	CTNAG	6 cut(s)	223, 252, 290, 363, 397, 492
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	2 cut(s)	408, 498
BstMBI	GATC	2 cut(s)	405, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 233, 310
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	2 cut(s)	85, 187
BstV1I	GCAGC	2 cut(s)	60, 371
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	85, 192
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	3 cut(s)	249, 287, 435
BveI	ACCTGC	1 cut(s)	2
Cfr13I	GGNCC	3 cut(s)	83, 122, 344
Csp6I	GTAC	2 cut(s)	210, 220
CviAII	CATG	2 cut(s)	403, 449
CviQI	GTAC	2 cut(s)	210, 220
DdeI	CTNAG	6 cut(s)	223, 252, 290, 363, 397, 492
DpnI	GATC	2 cut(s)	407, 497
DpnII	GATC	2 cut(s)	405, 495
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	122, 344
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	406, 452
FaiI	YATR	7 cut(s)	26, 130, 146, 404, 444, 450, 461
FaqI	GGGAC	2 cut(s)	135, 357
FatI	CATG	2 cut(s)	402, 448
Fnu4HI	GCNGC	2 cut(s)	49, 360
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	49, 360
FspBI	CTAG	5 cut(s)	176, 273, 317, 348, 455
GluI	GCNGC	2 cut(s)	49, 360
HaeIII	GGCC	2 cut(s)	85, 192
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	406, 452
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	1 cut(s)	86
Hpy188I	TCNGA	3 cut(s)	309, 366, 495
Hpy188III	TCNNGA	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	74, 112, 209
HpyCH4III	ACNGT	2 cut(s)	430, 488
HpyCH4V	TGCA	4 cut(s)	59, 241, 359, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 233, 310
HpyF3I	CTNAG	6 cut(s)	223, 252, 290, 363, 397, 492
Hsp92II	CATG	2 cut(s)	406, 452
Kzo9I	GATC	2 cut(s)	405, 495
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	7 cut(s)	99, 122, 174, 192, 201, 216, 493
Lsp1109I	GCAGC	2 cut(s)	60, 371
LweI	GCATC	2 cut(s)	259, 322
MaeI	CTAG	5 cut(s)	176, 273, 317, 348, 455
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	407, 497
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	2 cut(s)	405, 495
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	3 cut(s)	93, 278, 367
MnlI	CCTC	4 cut(s)	203, 315, 489, 509
MseI	TTAA	2 cut(s)	171, 297
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	87, 189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	65, 233, 310
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	405, 495
NlaIII	CATG	2 cut(s)	406, 452
NlaIV	GGNNCC	2 cut(s)	123, 345
NmuCI	GTSAC	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	2
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	50, 361
PpuMI	RGGWCCY	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	123, 345
PspPI	GGNCC	3 cut(s)	83, 122, 344
PspPPI	RGGWCCY	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	2 cut(s)	211, 221
RsaNI	GTAC	2 cut(s)	210, 220
SaqAI	TTAA	2 cut(s)	171, 297
SatI	GCNGC	2 cut(s)	49, 360
Sau3AI	GATC	2 cut(s)	405, 495
Sau96I	GGNCC	3 cut(s)	83, 122, 344
ScrFI	CCNGG	2 cut(s)	87, 189
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	8 cut(s)	16, 181, 201, 219, 322, 349, 364, 387
SfaNI	GCATC	2 cut(s)	259, 322
SinI	GGWCC	2 cut(s)	122, 344
Sse9I	AATT	3 cut(s)	93, 278, 367
SsiI	CCGC	3 cut(s)	5, 17, 266
SspMI	CTAG	5 cut(s)	176, 273, 317, 348, 455
StyD4I	CCNGG	2 cut(s)	85, 187
TaaI	ACNGT	2 cut(s)	430, 488
TaqI	TCGA	2 cut(s)	37, 195
TaqII	GACCGA	1 cut(s)	395
TasI	AATT	3 cut(s)	93, 278, 367
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	2 cut(s)	171, 297
Tru9I	TTAA	2 cut(s)	171, 297
TscAI	CASTG	3 cut(s)	256, 294, 435
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	48, 359
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	3 cut(s)	256, 294, 435
VpaK11BI	GGWCC	2 cut(s)	122, 344
XapI	RAATTY	3 cut(s)	93, 278, 367
XspI	CTAG	5 cut(s)	176, 273, 317, 348, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.