Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004226.1

Orthogroup ID

OG0003244

Physical Location & Seq

Genomic Coordinates Forward (+)

12411 .. 12716

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004226.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtcttcttacaaaggtcaagatggtgaggaggagaaattagaggaggaggaggtcatagatgaatgcaagacattctactttgcagggaaggagacaactgccaatatctcaacctgggctcttctccttctagcaaagcatcaggaatggcaagtcaaagctcgagaagaagtactacggatttgcagagacagtggacttccaatcgcacagaatttgaacaaccttagtgttgatattggctttcacttgatgggcttggcccaagttggtatcccatgtgagctgcatgtgctaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

101

Amino Acids

11.35

Weight (kDa)

4.74

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75130
fragaria_vesca	FvH4_2g40040 FvH4_2g40040 FvH4_2g40051
malus_domestica	MD08G1032800.v1.1 MD08G1032900.v1.1 MD08G1033000.v1.1 MD15G1029500.v1.1 MD15G1029600.v1.1
prunus_persica	Prupe.1G381900_v2.0.a1 Prupe.1G381900_v2.0.a1
pyrus_communis	pycom08g02610
rosa_chinensis	RchiOBHm_Chr6g0300691 RchiOBHm_Chr6g0300701 RchiOBHm_Chr6g0300711
rosa_laevigata	RLG00000011309 RLG00000011310 RLG00000011311
rosa_multiflora	Rmu_sc0004226.1_g000009 Rmu_sc0014374.1_g000005 Rmu_sc0014374.1_g000013 Rmu_sc0014374.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167490 Rroxscaffold_7G00167500 Rroxscaffold_7G00167510
rosa_rugosa	Rorug06G0298300 Rorug06G0298400 Rorug06G0298500 Rorug06G0298600
rosa_samantha	Rh6BG418400 Rh6BG418500 Rh6CG425900 Rh6DG411300 Rh6DG411400
rosa_wichuraiana	Rw0G002170 Rw6G035980 Rw6G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	217
AfaI	GTAC	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	164, 289
AluI	AGCT	2 cut(s)	164, 289
Alw26I	GTCTC	2 cut(s)	89, 186
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	124
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	17, 250
BciT130I	CCWGG	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	89, 186
BfaI	CTAG	2 cut(s)	134, 299
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
BmcAI	AGTACT	1 cut(s)	177
Bme1390I	CCNGG	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	117
BseRI	GAGGAG	5 cut(s)	44, 47, 59, 62, 65
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	89, 186
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	230
BstMAI	GTCTC	2 cut(s)	89, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	2 cut(s)	282, 293
CviJI	RGCY	6 cut(s)	122, 164, 246, 261, 266, 289
CviKI_1	RGCY	6 cut(s)	122, 164, 246, 261, 266, 289
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	2 cut(s)	285, 296
FaiI	YATR	3 cut(s)	59, 283, 294
FatI	CATG	2 cut(s)	281, 292
Fnu4HI	GCNGC	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	2 cut(s)	134, 299
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	285, 296
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188III	TCNNGA	3 cut(s)	20, 146, 167
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	85, 140
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	69, 86, 189, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	285, 296
LguI	GCTCTTC	1 cut(s)	129
LpnPI	CCDG	4 cut(s)	72, 103, 130, 131
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	134, 299
MboII	GAAGA	2 cut(s)	116, 182
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	38, 217
MnlI	CCTC	6 cut(s)	22, 25, 37, 40, 43, 46
MseI	TTAA	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	295
NlaIII	CATG	2 cut(s)	285, 296
NspI	RCATGY	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	304
SatI	GCNGC	1 cut(s)	290
Sau96I	GGNCC	1 cut(s)	265
ScaI	AGTACT	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	7 cut(s)	19, 57, 119, 166, 231, 291, 304
SfaNI	GCATC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	38, 217
SspMI	CTAG	2 cut(s)	134, 299
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	166
TasI	AATT	2 cut(s)	38, 217
TatI	WGTACW	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	1 cut(s)	217
XceI	RCATGY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	165
XspI	CTAG	2 cut(s)	134, 299
ZrmI	AGTACT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.