Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00067

Orthogroup ID

OG0003244

Physical Location & Seq

Genomic Coordinates Forward (+)

17036 .. 17577

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCTTCTTACAAAGGTCAAGATGGTGAGGAGGAGAAATTAGAGGAGGAGGAGGTCATAGATGAATGCAAGACATTCTACTTTGTAAGGAGGACAACTGCCAATATCTCAACCTGGGCTCTTCTCCTTCTAGCAAAGCATCAGGAATGGCAAGTCAAAGCTCGAGAAGAAGTACTACGGATTTGCAGAGACAGTGGACTTCCAATCGCACAGAATTTGAACAACCTTAGGATTGTGACTATGATAATCAATGAAACGCTGCGGCTTTACCCTCTAGCCCCATTTATAATGAGGGAAACACTAACAAGGGTTAAGCTAGGTGGTAGTCCTGGCCTCGACCTTCCTGCTGGTACACAGCTCTATTCAGCCTTGATTGCTCTACAACACGACACAGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

133

Amino Acids

15.19

Weight (kDa)

5.23

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	7 - 132	1.6e-24	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75130
fragaria_vesca	FvH4_2g40040 FvH4_2g40040 FvH4_2g40051
malus_domestica	MD08G1032800.v1.1 MD08G1032900.v1.1 MD08G1033000.v1.1 MD15G1029500.v1.1 MD15G1029600.v1.1
prunus_persica	Prupe.1G381900_v2.0.a1 Prupe.1G381900_v2.0.a1
pyrus_communis	pycom08g02610
rosa_chinensis	RchiOBHm_Chr6g0300691 RchiOBHm_Chr6g0300701 RchiOBHm_Chr6g0300711
rosa_laevigata	RLG00000011309 RLG00000011310 RLG00000011311
rosa_multiflora	Rmu_sc0004226.1_g000009 Rmu_sc0014374.1_g000005 Rmu_sc0014374.1_g000013 Rmu_sc0014374.1_g000014
rosa_roxburghii	Rroxscaffold_7G00167490 Rroxscaffold_7G00167500 Rroxscaffold_7G00167510
rosa_rugosa	Rorug06G0298300 Rorug06G0298400 Rorug06G0298500 Rorug06G0298600
rosa_samantha	Rh6BG418400 Rh6BG418500 Rh6CG425900 Rh6DG411300 Rh6DG411400
rosa_wichuraiana	Rw0G002170 Rw6G035980 Rw6G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AciI	CCGC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	2 cut(s)	174, 352
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	113, 328
AluBI	AGCT	3 cut(s)	161, 316, 358
AluI	AGCT	3 cut(s)	161, 316, 358
Alw26I	GTCTC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	162
AxyI	CCTNAGG	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	2 cut(s)	115, 330
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	3 cut(s)	131, 275, 317
BisI	GCNGC	2 cut(s)	260, 263
BlsI	GCNGC	2 cut(s)	261, 264
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	115, 330
BmeT110I	CYCGRG	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	115, 330
BmsI	GCATC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	114
Bse21I	CCTNAGG	1 cut(s)	227
BseBI	CCWGG	2 cut(s)	115, 330
BseDI	CCNNGG	1 cut(s)	114
BseRI	GAGGAG	5 cut(s)	44, 47, 59, 62, 65
BseXI	GCAGC	1 cut(s)	246
BshFI	GGCC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	333
BspQI	GCTCTTC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	115, 330
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	115, 330
BstSCI	CCNGG	2 cut(s)	113, 328
BstV1I	GCAGC	1 cut(s)	246
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	173, 351
CviJI	RGCY	8 cut(s)	119, 161, 265, 278, 316, 333, 358, 368
CviKI_1	RGCY	8 cut(s)	119, 161, 265, 278, 316, 333, 358, 368
CviQI	GTAC	2 cut(s)	173, 351
DdeI	CTNAG	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	121
Eco81I	CCTNAGG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	113, 328
EcoT38I	GRGCYC	1 cut(s)	121
FaiI	YATR	3 cut(s)	59, 242, 287
Fnu4HI	GCNGC	2 cut(s)	260, 263
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	260, 263
FspBI	CTAG	3 cut(s)	131, 275, 317
GluI	GCNGC	2 cut(s)	260, 263
HaeIII	GGCC	1 cut(s)	333
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	197, 353
Hpy188III	TCNNGA	3 cut(s)	20, 143, 164
Hpy8I	GTNNAC	2 cut(s)	197, 353
HpyAV	CCTTC	2 cut(s)	137, 350
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	69, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	227
LguI	GCTCTTC	1 cut(s)	126
LpnPI	CCDG	7 cut(s)	100, 127, 128, 315, 333, 342, 357
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	3 cut(s)	131, 275, 317
MaeIII	GTNAC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	113, 179
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	2 cut(s)	38, 214
MseI	TTAA	1 cut(s)	312
MspR9I	CCNGG	2 cut(s)	115, 330
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	115, 330
MwoI	GCNNNNNNNGC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	126
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	261, 264
PsiI	TTATAA	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	113, 328
PspGI	CCWGG	2 cut(s)	113, 328
RsaI	GTAC	2 cut(s)	174, 352
RsaNI	GTAC	2 cut(s)	173, 351
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	260, 263
ScaI	AGTACT	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	115, 330
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	9 cut(s)	19, 57, 116, 163, 228, 318, 322, 342, 360
SfaNI	GCATC	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	162
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
Sse9I	AATT	2 cut(s)	38, 214
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	3 cut(s)	131, 275, 317
StyD4I	CCNGG	2 cut(s)	113, 328
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	163, 336
TasI	AATT	2 cut(s)	38, 214
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	78, 267
TspGWI	ACGGA	1 cut(s)	193
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	214
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	3 cut(s)	131, 275, 317
ZrmI	AGTACT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.