Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004740

Physical Location & Seq

Genomic Coordinates Reverse (-)

65033469 .. 65034001

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27530

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGGAAGCAAGACAAGGTGGTCACTTGTGGGACGTGTAGAAACCCGATACATGAGGAATGTTTCTTGAAGTGGAAGAGGAGCGCGAGGAAGAAGCCAACTTATTGTGTGATGTGCAGGGCAAGATGGGGTTCGATTCAGCAGGAGCAGGAAAAGTACTTGAACTTGGTGGTACTAGCGAGGAGGAGGAGGAAGATGATGAGGACGAAGACGAGTATGAACGATGATCTGCACTGTGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000209 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004706 GO:0004709 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006508 GO:0006511 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007254 GO:0007256 GO:0007346 GO:0008150 GO:0008152 GO:0008289 GO:0008432 GO:0009056 GO:0009057 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010639 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031434 GO:0032147 GO:0032231 GO:0032232 GO:0032268 GO:0032270 GO:0032446 GO:0032872 GO:0032874 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043506 GO:0043507 GO:0043549 GO:0043632 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0046328 GO:0046330 GO:0046625 GO:0046777 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048583 GO:0048584 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051019 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051259 GO:0051338 GO:0051347 GO:0051403 GO:0051493 GO:0051494 GO:0051603 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0065009 GO:0070302 GO:0070304 GO:0070647 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0080134 GO:0080135 GO:0110053 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902533 GO:1902680 GO:1902903 GO:1902904 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIM zf-RING_2

Protein Analysis

81

Amino Acids

9.65

Weight (kDa)

9.86

Isoelectric Point (pI)

70.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11620 AT5G11620
fragaria_vesca	FvH4_2g35480
malus_domestica	MD08G1113400.v1.1 MD15G1092800.v1.1
prunus_persica	Prupe.1G447700_v2.0.a1
pyrus_communis	pycom08g09400
rosa_chinensis	RchiOBHm_Chr6g0306281 RchiOBHm_Chr6g0306291 RchiOBHm_Chr6g0306391 RchiOBHm_Chr6g0306401
rosa_laevigata	RLG00000010800 RLG00000010801 RLG00000010805 RLG00000010806
rosa_multiflora	Rmu_sc0002971.1_g000026 Rmu_sc0002971.1_g000027 Rmu_sc0003473.1_g000010
rosa_roxburghii	Rroxscaffold_7G00161810
rosa_rugosa	Rorug06G0348800 Rorug06G0348900 Rorug06G0351900
rosa_samantha	Rh6AG461200 Rh6AG461300 Rh6BG440000 Rh6CG475400 Rh6DG461700 Rh6DG462100 Rh6DG462200 Rh6DG465300
rosa_wichuraiana	Rw6G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	158, 174
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	70, 163
AjiI	CACGTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	215
BccI	CCATC	2 cut(s)	120, 233
BfaI	CTAG	1 cut(s)	176
BmcAI	AGTACT	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	215
BseRI	GAGGAG	4 cut(s)	94, 196, 199, 202
BsgI	GTGCAG	2 cut(s)	136, 215
Bsh1236I	CGCG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	86
BssMI	GATC	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	232
CfoI	GCGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	157, 173
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	1 cut(s)	97
CviKI_1	RGCY	1 cut(s)	97
CviQI	GTAC	2 cut(s)	157, 173
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
FaeI	CATG	1 cut(s)	56
FaiI	YATR	2 cut(s)	54, 218
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	52
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	117, 232
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	81, 145
LpnPI	CCDG	3 cut(s)	103, 128, 134
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	88, 103, 205, 220
MnlI	CCTC	8 cut(s)	49, 72, 81, 174, 177, 180, 183, 195
MseI	TTAA	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	86
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	158, 174
RsaNI	GTAC	2 cut(s)	157, 173
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	226
ScaI	AGTACT	1 cut(s)	158
SetI	ASST	2 cut(s)	21, 38
SmiMI	CAYNNNNRTG	1 cut(s)	237
SspMI	CTAG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	134
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	239
XspI	CTAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.