RchiOBHm_Chr6g0306391

Mitogen-activated protein kinase kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004740
Physical Location & Seq
Reverse (-)
65122601 .. 65123002
402 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27541

Sequence Viewer

Length: 402 bp
ATGTGTACACTGTCACATTGTCCACCGAGTCAACATGCTCGTGCCCTGACGTACGTTGTCTCCCCCTGCAAGCACCTGCTGTTTGTGTATCGCCAAGTATTGGGTGTTTGTATCGACACCCGTTGTGTTAGGAGGAGTGCACTCCATCCGAGCGAGGTGAGCTGGCTGTTGGGGCTGCCCATGTCGCGCGCATCACTGGCTGAGGATAGTGTCCGAAAGTGGTTTCATCAGCTCCATCCTCTTGGAAAGAAACAGCAGCAGCAGGAGAGGTCTTTCTCATCGAGGCCAAGCCTAAGTCTGCGAATTGAAGATGGTAGCTGCTGCCCTGTTTGCTTGGATGAGATAAGAAAGAGAGATAAATTCAAGTACATGTGCTGCTTACGACTAGGGACGATTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0000209 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004706 GO:0004709 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006508 GO:0006511 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007254 GO:0007256 GO:0007346 GO:0008150 GO:0008152 GO:0008289 GO:0008432 GO:0009056 GO:0009057 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010639 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031434 GO:0032147 GO:0032231 GO:0032232 GO:0032268 GO:0032270 GO:0032446 GO:0032872 GO:0032874 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043506 GO:0043507 GO:0043549 GO:0043632 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0046328 GO:0046330 GO:0046625 GO:0046777 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048583 GO:0048584 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051019 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051259 GO:0051338 GO:0051347 GO:0051403 GO:0051493 GO:0051494 GO:0051603 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0065009 GO:0070302 GO:0070304 GO:0070647 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0080134 GO:0080135 GO:0110053 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902533 GO:1902680 GO:1902903 GO:1902904 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM zf-RING_2

Protein Analysis

133

Amino Acids

15.3

Weight (kDa)

9.38

Isoelectric Point (pI)

75.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 84
AccB7I CCANNNNNTGG 1 cut(s) 100
AccII CGCG 2 cut(s) 187, 189
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 3 cut(s) 7, 53, 368
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 308, 364
AluBI AGCT 3 cut(s) 162, 232, 318
AluI AGCT 3 cut(s) 162, 232, 318
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 138
AoxI GGCC 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 6 cut(s) 175, 256, 259, 318, 321, 375
ApoI RAATTY 1 cut(s) 359
AspLEI GCGC 2 cut(s) 189, 191
AsuHPI GGTGA 1 cut(s) 169
BaeGI GKGCMC 2 cut(s) 46, 142
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 6 cut(s) 162, 268, 271, 305, 308, 362
BccI CCATC 3 cut(s) 153, 243, 305
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 84
BisI GCNGC 6 cut(s) 176, 257, 260, 319, 322, 376
BlsI GCNGC 6 cut(s) 177, 258, 261, 320, 323, 377
BmsI GCATC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 145, 235, 343
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 201
BsePI GCGCGC 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 2 cut(s) 46, 142
BseXI GCAGC 6 cut(s) 162, 268, 271, 305, 308, 362
Bsh1236I CGCG 2 cut(s) 187, 189
BshFI GGCC 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 142
BsiWI CGTACG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 46, 142
Bsp1407I TGTACA 1 cut(s) 5
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 2 cut(s) 187, 189
BspMI ACCTGC 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 5
BsrI ACTGG 1 cut(s) 201
BssHII GCGCGC 1 cut(s) 187
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 71, 164, 189
BstDEI CTNAG 2 cut(s) 201, 293
BstF5I GGATG 3 cut(s) 145, 235, 343
BstFNI CGCG 2 cut(s) 187, 189
BstHHI GCGC 2 cut(s) 189, 191
BstMAI GTCTC 1 cut(s) 64
BstMWI GCNNNNNNNGC 5 cut(s) 159, 172, 184, 197, 330
BstNSI RCATGY 2 cut(s) 38, 373
BstSLI GKGCMC 2 cut(s) 46, 142
BstUI CGCG 2 cut(s) 187, 189
BstV1I GCAGC 6 cut(s) 162, 268, 271, 305, 308, 362
BstXI CCANNNNNNTGG 1 cut(s) 242
BsuRI GGCC 1 cut(s) 286
BtsCI GGATG 3 cut(s) 145, 235, 343
BtsIMutI CAGTG 2 cut(s) 8, 194
BveI ACCTGC 1 cut(s) 84
Cac8I GCNNGC 3 cut(s) 71, 164, 189
CfoI GCGC 2 cut(s) 189, 191
Csp6I GTAC 3 cut(s) 6, 52, 367
CviAII CATG 3 cut(s) 35, 181, 370
CviJI RGCY 8 cut(s) 162, 166, 175, 200, 232, 286, 291, 318
CviKI_1 RGCY 8 cut(s) 162, 166, 175, 200, 232, 286, 291, 318
CviQI GTAC 3 cut(s) 6, 52, 367
DdeI CTNAG 2 cut(s) 201, 293
FaeI CATG 3 cut(s) 38, 184, 373
FaiI YATR 3 cut(s) 36, 182, 371
FatI CATG 3 cut(s) 34, 180, 369
Fnu4HI GCNGC 6 cut(s) 176, 257, 260, 319, 322, 376
FokI GGATG 3 cut(s) 132, 222, 350
Fsp4HI GCNGC 6 cut(s) 176, 257, 260, 319, 322, 376
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 188, 190
GluI GCNGC 6 cut(s) 176, 257, 260, 319, 322, 376
HaeIII GGCC 1 cut(s) 286
HhaI GCGC 2 cut(s) 189, 191
Hin1II CATG 3 cut(s) 38, 184, 373
Hin6I GCGC 2 cut(s) 187, 189
HinP1I GCGC 2 cut(s) 187, 189
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HinfI GANTC 2 cut(s) 28, 394
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 5 cut(s) 6, 8, 23, 32, 140
Hpy188I TCNGA 2 cut(s) 150, 215
Hpy8I GTNNAC 5 cut(s) 6, 8, 23, 32, 140
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 2 cut(s) 50, 54
HpyCH4V TGCA 2 cut(s) 69, 140
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 172, 184, 197, 330
HpyF3I CTNAG 2 cut(s) 201, 293
HpySE526I ACGT 2 cut(s) 50, 54
Hsp92II CATG 3 cut(s) 38, 184, 373
HspAI GCGC 2 cut(s) 187, 189
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 7 cut(s) 59, 79, 89, 148, 182, 248, 339
Lsp1109I GCAGC 6 cut(s) 162, 268, 271, 305, 308, 362
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 50, 54
MaeIII GTNAC 1 cut(s) 12
MboII GAAGA 1 cut(s) 320
MhlI GDGCHC 2 cut(s) 46, 142
MluCI AATT 2 cut(s) 303, 359
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 6 cut(s) 126, 148, 196, 249, 261, 276
MslI CAYNNNNRTG 1 cut(s) 39
MvnI CGCG 2 cut(s) 187, 189
MwoI GCNNNNNNNGC 5 cut(s) 159, 172, 184, 197, 330
NlaIII CATG 3 cut(s) 38, 184, 373
NmuCI GTSAC 1 cut(s) 12
NspI RCATGY 2 cut(s) 38, 373
PaqCI CACCTGC 1 cut(s) 84
PauI GCGCGC 1 cut(s) 187
PciI ACATGT 1 cut(s) 369
PfeI GAWTC 1 cut(s) 394
Pfl23II CGTACG 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 6 cut(s) 177, 258, 261, 320, 323, 377
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PscI ACATGT 1 cut(s) 369
PspLI CGTACG 1 cut(s) 51
PteI GCGCGC 1 cut(s) 187
RsaI GTAC 3 cut(s) 7, 53, 368
RsaNI GTAC 3 cut(s) 6, 52, 367
RseI CAYNNNNRTG 1 cut(s) 39
SatI GCNGC 6 cut(s) 176, 257, 260, 319, 322, 376
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 2 cut(s) 46, 142
SetI ASST 8 cut(s) 53, 57, 78, 159, 164, 234, 272, 320
SfaNI GCATC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 2 cut(s) 303, 359
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 2 cut(s) 53, 57
TaqI TCGA 2 cut(s) 114, 281
TasI AATT 2 cut(s) 303, 359
TatI WGTACW 2 cut(s) 5, 366
TfiI GAWTC 1 cut(s) 394
TscAI CASTG 2 cut(s) 15, 201
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 6 cut(s) 175, 256, 259, 318, 321, 375
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 2 cut(s) 215, 386
TspRI CASTG 2 cut(s) 15, 201
Van91I CCANNNNNTGG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 138
XapI RAATTY 1 cut(s) 359
XceI RCATGY 2 cut(s) 38, 373
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.