Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004740

Physical Location & Seq

Genomic Coordinates Forward (+)

4474048 .. 4475164

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGGAAGCAAGACAAGGTGGTGGCTTGTGGGACGTGTAGAAACCCGATACATGAGGAATGTTTCTTGAAGTGGAAGAGGAGCGCGAGGAAGAAGCCAGCTTATTGTGTGATGTGCAGGGCAAGATGGGGTTCGATTCAGCAGGAGCAGGAGAAGTACTTGAACTTGGTGGCTTACGCCAGTACTAGCGAGGAGGAGGAGGAAGATGATGAGGACGAAGACGAGAGAAGTGATCTTGTGCTTTTTAAAGAAAACCTGTTGAAGAGAAGGATTCAGGAGATGGAAAAAGAGCATCTCAGTTCTACTATATACAATGTATACTATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000209 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004706 GO:0004709 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006508 GO:0006511 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007254 GO:0007256 GO:0007346 GO:0008150 GO:0008152 GO:0008289 GO:0008432 GO:0009056 GO:0009057 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010639 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031434 GO:0032147 GO:0032231 GO:0032232 GO:0032268 GO:0032270 GO:0032446 GO:0032872 GO:0032874 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043506 GO:0043507 GO:0043549 GO:0043632 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0046328 GO:0046330 GO:0046625 GO:0046777 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048583 GO:0048584 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051019 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051259 GO:0051338 GO:0051347 GO:0051403 GO:0051493 GO:0051494 GO:0051603 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0065009 GO:0070302 GO:0070304 GO:0070647 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0080134 GO:0080135 GO:0110053 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902533 GO:1902680 GO:1902903 GO:1902904 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SWIM zf-RING_2

Protein Analysis

110

Amino Acids

13.0

Weight (kDa)

5.29

Isoelectric Point (pI)

76.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11620 AT5G11620
fragaria_vesca	FvH4_2g35480
malus_domestica	MD08G1113400.v1.1 MD15G1092800.v1.1
prunus_persica	Prupe.1G447700_v2.0.a1
pyrus_communis	pycom08g09400
rosa_chinensis	RchiOBHm_Chr6g0306281 RchiOBHm_Chr6g0306291 RchiOBHm_Chr6g0306391 RchiOBHm_Chr6g0306401
rosa_laevigata	RLG00000010800 RLG00000010801 RLG00000010805 RLG00000010806
rosa_multiflora	Rmu_sc0002971.1_g000026 Rmu_sc0002971.1_g000027 Rmu_sc0003473.1_g000010
rosa_roxburghii	Rroxscaffold_7G00161810
rosa_rugosa	Rorug06G0348800 Rorug06G0348900 Rorug06G0351900
rosa_samantha	Rh6AG461200 Rh6AG461300 Rh6BG440000 Rh6CG475400 Rh6DG461700 Rh6DG462100 Rh6DG462200 Rh6DG465300
rosa_wichuraiana	Rw6G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	158, 184
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	70, 163, 262
AjiI	CACGTC	1 cut(s)	36
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	225
BccI	CCATC	2 cut(s)	120, 274
BfaI	CTAG	1 cut(s)	186
BmcAI	AGTACT	2 cut(s)	158, 184
BmgBI	CACGTC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	4 cut(s)	94, 206, 209, 212
BsgI	GTGCAG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	232
BssNAI	GTATAC	1 cut(s)	319
Bst1107I	GTATAC	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	71, 257
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	225
BstZ17I	GTATAC	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	157, 183
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	4 cut(s)	26, 97, 101, 173
CviKI_1	RGCY	4 cut(s)	26, 97, 101, 173
CviQI	GTAC	2 cut(s)	157, 183
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraI	TTTAAA	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	71, 257
EarI	CTCTTC	2 cut(s)	71, 257
FaeI	CATG	1 cut(s)	56
FaiI	YATR	5 cut(s)	54, 308, 310, 319, 324
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	136, 271
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	67, 275
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	81, 145
LpnPI	CCDG	7 cut(s)	103, 111, 128, 134, 193, 260, 269
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	35
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	5 cut(s)	88, 103, 215, 230, 274
MnlI	CCTC	8 cut(s)	49, 72, 81, 184, 187, 190, 193, 205
MseI	TTAA	2 cut(s)	246, 328
MvnI	CGCG	1 cut(s)	86
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	136, 271
RsaI	GTAC	2 cut(s)	158, 184
RsaNI	GTAC	2 cut(s)	157, 183
SaqAI	TTAA	2 cut(s)	246, 328
Sau3AI	GATC	1 cut(s)	232
ScaI	AGTACT	2 cut(s)	158, 184
SetI	ASST	4 cut(s)	21, 38, 103, 258
SfaNI	GCATC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	186
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	134
TatI	WGTACW	2 cut(s)	156, 182
TfiI	GAWTC	2 cut(s)	136, 271
Tru1I	TTAA	2 cut(s)	246, 328
Tru9I	TTAA	2 cut(s)	246, 328
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	2 cut(s)	158, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.