RLG00000010805

Mitogen-activated protein kinase kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004740
Physical Location & Seq
Forward (+)
4472912 .. 4474009
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010805

Sequence Viewer

Length: 609 bp
ATGTCAAAATTGGGTTCATGGGACGGGGGAGGGTCAATGTCGACATCAAAGAGTGTGTTGGTGGTCAGTGCGATAGGATTCACTTCAGATGGGTTTAGATCGTTGCACGGGTCCGTCGTTGGCTCTAGTGGTGGCGGCGGCAACCTTTGTACCGTAACAACTACGGGCAATCATCTTCCTAATTCCCCCAATTCAATAATACTGCGGTCCAGCAGCTACAAGCCCTTCAATGACTCTGTGGAGCGAGCCCTCAACCATCACATTCGCCTCATGCACCGCTCCAGTGCCACCTTCTTCATCTTGGGCGTCACTGGCAATGTGTACACTGCCATCATAACAAGTTACCCTAAATGCAGCTGCCCCGACCCTGTAACACCATGCAAGCATTTGTTGTTTGTGTATATCCAAGTGTTGGGTCTTTCAGCCCATGATAAGTCTTTTAGGGAGGGCTCATTCTCGCATTGGGAGTGGAGCACATGCTGGGGCACGACACGCTGCCTGAATCTCGGGGTGGAGAAAACGTGTGGCAATAGTTTCATCAGCTGTATGATTTTCAGGGGAAGCAGTGGCAGTAGGGGTCTTCTTCGTCGTCAAAGCCAAGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0000209 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004706 GO:0004709 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006508 GO:0006511 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007254 GO:0007256 GO:0007346 GO:0008150 GO:0008152 GO:0008289 GO:0008432 GO:0009056 GO:0009057 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010639 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016567 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030163 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031434 GO:0032147 GO:0032231 GO:0032232 GO:0032268 GO:0032270 GO:0032446 GO:0032872 GO:0032874 GO:0032956 GO:0032970 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043506 GO:0043507 GO:0043549 GO:0043632 GO:0043900 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0046328 GO:0046330 GO:0046625 GO:0046777 GO:0046782 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048583 GO:0048584 GO:0050434 GO:0050789 GO:0050790 GO:0050792 GO:0050794 GO:0050896 GO:0051019 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051259 GO:0051338 GO:0051347 GO:0051403 GO:0051493 GO:0051494 GO:0051603 GO:0051716 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0065009 GO:0070302 GO:0070304 GO:0070647 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0080134 GO:0080135 GO:0110053 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902533 GO:1902680 GO:1902903 GO:1902904 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM zf-RING_2

Protein Analysis

203

Amino Acids

21.85

Weight (kDa)

9.28

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 279
AccI GTMKAC 1 cut(s) 41
AciI CCGC 4 cut(s) 135, 138, 205, 277
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 2 cut(s) 151, 323
AfiI CCNNNNNNNGG 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 521
AgsI TTSAA 2 cut(s) 195, 229
AluBI AGCT 3 cut(s) 216, 357, 543
AluI AGCT 3 cut(s) 216, 357, 543
Alw21I GWGCWC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 506
ApeKI GCWGC 4 cut(s) 213, 354, 357, 495
AspS9I GGNCC 2 cut(s) 111, 207
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 2 cut(s) 111, 207
BaeGI GKGCMC 1 cut(s) 488
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BanII GRGCYC 2 cut(s) 250, 452
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 4 cut(s) 225, 344, 366, 482
BccI CCATC 3 cut(s) 83, 264, 338
BfaI CTAG 1 cut(s) 126
BisI GCNGC 6 cut(s) 136, 139, 214, 355, 358, 496
BlsI GCNGC 6 cut(s) 137, 140, 215, 356, 359, 497
Bme18I GGWCC 2 cut(s) 111, 207
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 111, 207
BmiI GGNNCC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 282, 316
Bse3DI GCAATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 2 cut(s) 282, 316
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 4 cut(s) 225, 344, 366, 482
BseYI CCCAGC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 4 cut(s) 250, 452, 476, 488
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 4 cut(s) 135, 138, 205, 277
BspLI GGNNCC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 2 cut(s) 282, 316
BssMI GATC 1 cut(s) 98
BssNI GRCGYC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 246, 383
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 312, 492
BstNSI RCATGY 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 488
BstV1I GCAGC 4 cut(s) 225, 344, 366, 482
BstV2I GAAGAC 1 cut(s) 572
BtsI GCAGTG 2 cut(s) 324, 571
BtsIMutI CAGTG 5 cut(s) 73, 289, 309, 324, 571
Cac8I GCNNGC 2 cut(s) 246, 383
Cfr13I GGNCC 2 cut(s) 111, 207
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 150, 322
CviAII CATG 5 cut(s) 18, 271, 378, 428, 477
CviJI RGCY 9 cut(s) 123, 216, 223, 248, 357, 425, 450, 543, 597
CviKI_1 RGCY 9 cut(s) 123, 216, 223, 248, 357, 425, 450, 543, 597
CviQI GTAC 2 cut(s) 150, 322
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 250, 452
Eco47I GGWCC 2 cut(s) 111, 207
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 506
EcoT38I GRGCYC 2 cut(s) 250, 452
FaeI CATG 5 cut(s) 21, 274, 381, 431, 480
FaiI YATR 8 cut(s) 19, 272, 335, 379, 402, 429, 478, 548
FaqI GGGAC 1 cut(s) 35
FatI CATG 5 cut(s) 17, 270, 377, 427, 476
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 6 cut(s) 136, 139, 214, 355, 358, 496
FriOI GRGCYC 2 cut(s) 250, 452
Fsp4HI GCNGC 6 cut(s) 136, 139, 214, 355, 358, 496
FspBI CTAG 1 cut(s) 126
GluI GCNGC 6 cut(s) 136, 139, 214, 355, 358, 496
GsaI CCCAGC 1 cut(s) 484
GsuI CTGGAG 1 cut(s) 265
HgaI GACGC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 5 cut(s) 21, 274, 381, 431, 480
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 3 cut(s) 78, 233, 502
Hpy166II GTNNAC 3 cut(s) 42, 322, 324
Hpy188I TCNGA 1 cut(s) 88
Hpy8I GTNNAC 3 cut(s) 42, 322, 324
Hpy99I CGWCG 2 cut(s) 119, 591
HpyAV CCTTC 2 cut(s) 235, 301
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 4 cut(s) 106, 274, 354, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 312, 492
HpySE526I ACGT 1 cut(s) 521
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 5 cut(s) 21, 274, 381, 431, 480
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 3 cut(s) 241, 284, 471
LpnPI CCDG 7 cut(s) 223, 295, 297, 381, 466, 512, 541
Lsp1109I GCAGC 4 cut(s) 225, 344, 366, 482
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 4 cut(s) 154, 307, 341, 370
MalI GATC 1 cut(s) 100
MbiI CCGCTC 1 cut(s) 279
MboI GATC 1 cut(s) 98
MboII GAAGA 4 cut(s) 167, 286, 572, 575
MhlI GDGCHC 4 cut(s) 250, 452, 476, 488
MluCI AATT 3 cut(s) 8, 181, 190
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 4 cut(s) 23, 260, 278, 439
MspA1I CMGCKG 2 cut(s) 357, 543
MwoI GCNNNNNNNGC 2 cut(s) 312, 492
NdeII GATC 1 cut(s) 98
NlaIII CATG 5 cut(s) 21, 274, 381, 431, 480
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 480
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 78, 502
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 6 cut(s) 137, 140, 215, 356, 359, 497
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 111, 207
PvuII CAGCTG 2 cut(s) 357, 543
RsaI GTAC 2 cut(s) 151, 323
RsaNI GTAC 2 cut(s) 150, 322
SalI GTCGAC 1 cut(s) 40
SatI GCNGC 6 cut(s) 136, 139, 214, 355, 358, 496
Sau3AI GATC 1 cut(s) 98
Sau96I GGNCC 2 cut(s) 111, 207
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 4 cut(s) 250, 452, 476, 488
SetI ASST 6 cut(s) 147, 218, 293, 359, 524, 545
SinI GGWCC 2 cut(s) 111, 207
Sse9I AATT 3 cut(s) 8, 181, 190
SsiI CCGC 4 cut(s) 135, 138, 205, 277
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 524
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 8, 181, 190
TatI WGTACW 1 cut(s) 321
TauI GCSGC 2 cut(s) 138, 141
TfiI GAWTC 2 cut(s) 78, 502
TscAI CASTG 5 cut(s) 73, 289, 316, 331, 571
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 4 cut(s) 213, 354, 357, 495
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 6, 286, 526
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 5 cut(s) 73, 289, 316, 331, 571
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 111, 207
XceI RCATGY 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 41
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.