RchiOBHm_Chr6g0307011

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008911
Physical Location & Seq
Reverse (-)
65556074 .. 65557404
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27602

Sequence Viewer

Length: 291 bp
ATGGCAAAGTTTCACGGTCATGATGGTGGGTCAAAATTGTTGACTACCCCCACACCGGGTGAGGATGAACCAGCACTAATGGTCAACAAGGTTAGCGACCCGGCTGATCGGAAATCGTTCTCGGAGGTCTGCAAGCTATGGTATAAAGTGGAGAGTCTAAACCGATCATCACTTCGTCTTCTCGGTCCCAATTTTCCCCGTCAGGTACTCCCAAGATTCCCAAATTTAGTCAAATTCGAGACATCCCACTCCATCACGGACGATGATCTGGAATTTTTGGGCCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

96

Amino Acids

10.79

Weight (kDa)

6.27

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 31 - 56 9.8e-08 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 223, 233, 272
AdeI CACNNNGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 55, 56
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 233
AoxI GGCC 1 cut(s) 280
ApoI RAATTY 3 cut(s) 223, 233, 272
Asp700I GAANNNNTTC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 185, 280
AsuC2I CCSGG 2 cut(s) 57, 101
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 2 cut(s) 17, 260
BcnI CCSGG 2 cut(s) 57, 101
BcoDI GTCTC 1 cut(s) 233
Bme1390I CCNGG 2 cut(s) 57, 101
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 185, 280
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 57, 101
BpiI GAAGAC 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 57, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 56
BseGI GGATG 2 cut(s) 70, 242
BseLI CCNNNNNNNGG 2 cut(s) 55, 56
BshFI GGCC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 56, 101
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 55, 56
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 171
BsnI GGCC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 106, 164, 265
BspANI GGCC 1 cut(s) 282
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 187
BssMI GATC 3 cut(s) 106, 164, 265
Bst4CI ACNGT 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 134
BstF5I GGATG 2 cut(s) 70, 242
BstKTI GATC 3 cut(s) 109, 167, 268
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 3 cut(s) 106, 164, 265
BstSCI CCNGG 2 cut(s) 55, 99
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 2 cut(s) 70, 242
Cac8I GCNNGC 1 cut(s) 134
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 185, 280
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 20
CviJI RGCY 3 cut(s) 104, 136, 282
CviKI_1 RGCY 3 cut(s) 104, 136, 282
CviQI GTAC 1 cut(s) 206
DpnI GATC 3 cut(s) 108, 166, 267
DpnII GATC 3 cut(s) 106, 164, 265
DraIII CACNNNGTG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 185
FaeI CATG 1 cut(s) 23
FaiI YATR 3 cut(s) 21, 139, 144
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 19
FokI GGATG 2 cut(s) 77, 229
HaeIII GGCC 1 cut(s) 282
HapII CCGG 2 cut(s) 56, 101
Hin1II CATG 1 cut(s) 23
HincII GTYRAC 2 cut(s) 42, 85
HindII GTYRAC 2 cut(s) 42, 85
HinfI GANTC 2 cut(s) 154, 216
HpaII CCGG 2 cut(s) 56, 101
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 42, 85
Hpy188I TCNGA 2 cut(s) 111, 124
Hpy188III TCNNGA 3 cut(s) 20, 238, 269
Hpy8I GTNNAC 2 cut(s) 42, 85
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 132
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 3 cut(s) 106, 164, 265
LpnPI CCDG 5 cut(s) 69, 84, 114, 188, 254
MalI GATC 3 cut(s) 108, 166, 267
MboI GATC 3 cut(s) 106, 164, 265
MboII GAAGA 1 cut(s) 170
MluCI AATT 5 cut(s) 35, 190, 223, 233, 272
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 2 cut(s) 55, 118
MroXI GAANNNNTTC 1 cut(s) 116
MslI CAYNNNNRTG 2 cut(s) 18, 24
MspI CCGG 2 cut(s) 56, 101
MspR9I CCNGG 2 cut(s) 57, 101
NciI CCSGG 2 cut(s) 57, 101
NdeII GATC 3 cut(s) 106, 164, 265
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 187
PagI TCATGA 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 216
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 185, 280
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 2 cut(s) 18, 24
Sau3AI GATC 3 cut(s) 106, 164, 265
Sau96I GGNCC 2 cut(s) 185, 280
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 57, 101
SetI ASST 4 cut(s) 93, 129, 138, 207
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 18, 24
Sse9I AATT 5 cut(s) 35, 190, 223, 233, 272
StyD4I CCNGG 2 cut(s) 55, 99
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 173
TasI AATT 5 cut(s) 35, 190, 223, 233, 272
TfiI GAWTC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 3 cut(s) 223, 233, 272
XmnI GAANNNNTTC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.