Rroxscaffold_7G00161240

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008911
Physical Location & Seq
Forward (+)
4034738 .. 4035643
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161240.1

Sequence Viewer

Length: 906 bp
ATGGATGATGAGGATCTGCTTGCTCTAATCGTCAATAAGATTAGCAACCCAGATGATAGAAGATCGTTTTCGGAGGTCTGCAAGCAATGGCTGAGAGTGGAAGGTCTAAACCGATCATCCCTTCGTCTTCTCCGATCCGAATATCTCCATCAGGCGCTCCCTAGATTCCCAAATTCACTCACATTTGAAACTTCCGAGCCCATCACTCAAACCAACCTCAAGTTCATAGCTCAAACTTGTCGCGATCTCGAGGCCGTCAACCTCAGTACCAAAGATCACCCTCCATTTAAGAAGAGTCCTGACTATTGGGTCGATGGTATGAGCGTTTTGGCAAAGGGTTGTCCCAGACTATCCCGGGTTATGCTTAGACGGAGATCGGTGAATGTTCATCTTAAGTTTTTAAACTCAGCACACAATTTGACACATTTGGATTTGGGACATTGCTTGGTCTTGGACGAAGACCTCGAAGCAATTGGGTCTTGTAGTTCGATTAGCTACTTGAATTTGAAATGGGGTCTAATCACGGATGAAGGATTGGGTTTTCTGGCAAATGGTTCTTGCTCGAAAACCCTCAAGACATTGGTCCTTGCTCAGTGTGACGAGATTGCAGATGTTGGGGTCTCGCTTTTGCACAAAATGAGCTGCTTGGAGTACCTGAATTTGGCTTGGTTGTCAAAAGTTACTGACATTGGAGGTGTCGCAGTCTCGGAAATTGGAACACTTCAGAAATTGAACTTGAGTTCGCTGTATAAAATCTCAGACTGCACCATTGCTGCTCTTGCTGAGAACTGCCGCAACTTGGAGGTGCTTAATATAAGTCGTTGTGCTTTGGTAACTGGAGCTGGTACTCATGCATTTTCAACTCATCCGTACTTAGAATCTCTTGTGTATGATGGGAACACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

301

Amino Acids

33.38

Weight (kDa)

6.14

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 134 - 287 4.6e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccII CGCG 1 cut(s) 243
AciI CCGC 1 cut(s) 793
AclWI GGATC 2 cut(s) 21, 129
AcsI RAATTY 3 cut(s) 172, 502, 658
AcuI CTGAAG 1 cut(s) 707
AfaI GTAC 4 cut(s) 268, 653, 847, 872
AfiI CCNNNNNNNGG 2 cut(s) 661, 799
AflII CTTAAG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 900
AgsI TTSAA 5 cut(s) 188, 502, 508, 733, 861
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 4 cut(s) 230, 495, 642, 842
AluI AGCT 4 cut(s) 230, 495, 642, 842
Alw26I GTCTC 2 cut(s) 625, 709
AlwI GGATC 2 cut(s) 21, 129
Ama87I CYCGRG 2 cut(s) 248, 354
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 642, 773
ApoI RAATTY 3 cut(s) 172, 502, 658
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 583
AsuC2I CCSGG 2 cut(s) 355, 356
AsuHPI GGTGA 2 cut(s) 269, 391
AvaI CYCGRG 2 cut(s) 248, 354
AvaII GGWCC 1 cut(s) 583
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BanII GRGCYC 1 cut(s) 201
BbsI GAAGAC 2 cut(s) 119, 465
BbvI GCAGC 2 cut(s) 629, 760
BccI CCATC 4 cut(s) 156, 209, 308, 887
BceAI ACGGC 1 cut(s) 239
BcnI CCSGG 2 cut(s) 355, 356
BcoDI GTCTC 2 cut(s) 625, 709
BfaI CTAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 158
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 3 cut(s) 643, 774, 793
BlsI GCNGC 3 cut(s) 644, 775, 794
Bme1390I CCNGG 2 cut(s) 355, 356
Bme18I GGWCC 1 cut(s) 583
BmeT110I CYCGRG 2 cut(s) 248, 354
BmgT120I GGNCC 1 cut(s) 583
BmrFI CCNGG 2 cut(s) 355, 356
BoxI GACNNNNGTC 1 cut(s) 581
BpiI GAAGAC 2 cut(s) 119, 465
BpmI CTGGAG 1 cut(s) 858
BpuEI CTTGAG 3 cut(s) 203, 557, 757
BpuMI CCSGG 2 cut(s) 355, 356
BsaAI YACGTR 1 cut(s) 903
BsaBI GATNNNNATC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 661, 799
Bse1I ACTGG 1 cut(s) 841
Bse3DI GCAATG 3 cut(s) 92, 439, 768
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 4 cut(s) 10, 116, 532, 865
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 661, 799
BseMI GCAATG 3 cut(s) 92, 439, 768
BseMII CTCAG 6 cut(s) 83, 277, 420, 605, 771, 774
BseNI ACTGG 1 cut(s) 841
BseXI GCAGC 2 cut(s) 629, 760
BsgI GTGCAG 1 cut(s) 748
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 254
BsiHKCI CYCGRG 2 cut(s) 248, 354
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 2 cut(s) 327, 450
BslI CCNNNNNNNGG 2 cut(s) 661, 799
BsmAI GTCTC 2 cut(s) 625, 709
BsmFI GGGAC 2 cut(s) 327, 450
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 625
BsoBI CYCGRG 2 cut(s) 248, 354
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
Bsp68I TCGCGA 1 cut(s) 243
BspACI CCGC 1 cut(s) 793
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 6 cut(s) 84, 276, 419, 604, 770, 775
BspFNI CGCG 1 cut(s) 243
BspPI GGATC 2 cut(s) 21, 129
BspTI CTTAAG 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 625
BsrDI GCAATG 3 cut(s) 92, 439, 768
BsrI ACTGG 1 cut(s) 841
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
Bst6I CTCTTC 1 cut(s) 287
BstAFI CTTAAG 1 cut(s) 392
BstBAI YACGTR 1 cut(s) 903
BstC8I GCNNGC 2 cut(s) 21, 83
BstDEI CTNAG 8 cut(s) 92, 263, 365, 406, 591, 757, 783, 874
BstF5I GGATG 4 cut(s) 10, 116, 532, 865
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 7 cut(s) 16, 65, 116, 137, 247, 277, 377
BstMAI GTCTC 2 cut(s) 625, 709
BstMBI GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
BstMWI GCNNNNNNNGC 1 cut(s) 779
BstPAI GACNNNNGTC 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 353, 354
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 629, 760
BstV2I GAAGAC 2 cut(s) 119, 465
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 4 cut(s) 10, 116, 532, 865
BtsIMutI CAGTG 1 cut(s) 599
BtuMI TCGCGA 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 21, 83
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 583
Cfr9I CCCGGG 1 cut(s) 354
Csp6I GTAC 4 cut(s) 267, 652, 846, 871
CviAII CATG 1 cut(s) 851
CviJI RGCY 8 cut(s) 91, 199, 230, 254, 495, 642, 665, 842
CviKI_1 RGCY 8 cut(s) 91, 199, 230, 254, 495, 642, 665, 842
CviQI GTAC 4 cut(s) 267, 652, 846, 871
DdeI CTNAG 8 cut(s) 92, 263, 365, 406, 591, 757, 783, 874
DpnI GATC 7 cut(s) 15, 64, 115, 136, 246, 276, 376
DpnII GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
DraI TTTAAA 1 cut(s) 402
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 707
Eco88I CYCGRG 2 cut(s) 248, 354
EcoT22I ATGCAT 1 cut(s) 856
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 1 cut(s) 854
FaiI YATR 7 cut(s) 227, 320, 362, 750, 815, 852, 891
FaqI GGGAC 2 cut(s) 327, 450
FatI CATG 1 cut(s) 850
Fnu4HI GCNGC 3 cut(s) 643, 774, 793
FokI GGATG 4 cut(s) 17, 103, 539, 852
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 643, 774, 793
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 156
GluI GCNGC 3 cut(s) 643, 774, 793
GsuI CTGGAG 1 cut(s) 858
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 355
HhaI GCGC 1 cut(s) 157
Hin1II CATG 1 cut(s) 854
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 3 cut(s) 165, 295, 878
HpaII CCGG 1 cut(s) 355
HphI GGTGA 2 cut(s) 269, 391
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 7 cut(s) 73, 134, 139, 196, 709, 726, 760
Hpy188III TCNNGA 4 cut(s) 242, 248, 299, 574
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 95, 131, 524
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 5 cut(s) 81, 608, 631, 765, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 779
HpyF3I CTNAG 8 cut(s) 92, 263, 365, 406, 591, 757, 783, 874
HpySE526I ACGT 1 cut(s) 902
Hsp92II CATG 1 cut(s) 854
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
LmnI GCTCC 2 cut(s) 162, 839
LpnPI CCDG 9 cut(s) 63, 137, 312, 358, 368, 530, 668, 822, 828
Lsp1109I GCAGC 2 cut(s) 629, 760
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 3 cut(s) 596, 679, 832
MalI GATC 7 cut(s) 15, 64, 115, 136, 246, 276, 376
MboI GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
MboII GAAGA 4 cut(s) 72, 119, 304, 470
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 7 cut(s) 172, 415, 471, 502, 658, 711, 728
MlyI GAGTC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 856
MseI TTAA 4 cut(s) 288, 393, 401, 810
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 2 cut(s) 355, 356
MunI CAATTG 1 cut(s) 471
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 779
NciI CCSGG 2 cut(s) 355, 356
NdeII GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
NlaIII CATG 1 cut(s) 854
NmuCI GTSAC 1 cut(s) 596
NruI TCGCGA 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 856
PaeR7I CTCGAG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 2 cut(s) 130, 462
PfeI GAWTC 2 cut(s) 165, 878
PkrI GCNGC 3 cut(s) 644, 775, 794
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 903
PshAI GACNNNNGTC 1 cut(s) 581
PspPI GGNCC 1 cut(s) 583
PsuI RGATCY 1 cut(s) 13
RruI TCGCGA 1 cut(s) 243
RsaI GTAC 4 cut(s) 268, 653, 847, 872
RsaNI GTAC 4 cut(s) 267, 652, 846, 871
SaqAI TTAA 4 cut(s) 288, 393, 401, 810
SatI GCNGC 3 cut(s) 643, 774, 793
Sau3AI GATC 7 cut(s) 13, 62, 113, 134, 244, 274, 374
Sau96I GGNCC 1 cut(s) 583
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 355, 356
SduI GDGCHC 1 cut(s) 201
Sfr274I CTCGAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 583
SlaI CTCGAG 1 cut(s) 248
SmaI CCCGGG 1 cut(s) 356
SmlI CTYRAG 5 cut(s) 218, 248, 392, 572, 736
SmoI CTYRAG 5 cut(s) 218, 248, 392, 572, 736
Sse9I AATT 7 cut(s) 172, 415, 471, 502, 658, 711, 728
SsiI CCGC 1 cut(s) 793
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 353, 354
TaiI ACGT 1 cut(s) 905
TaqI TCGA 5 cut(s) 249, 312, 465, 488, 563
TasI AATT 7 cut(s) 172, 415, 471, 502, 658, 711, 728
TauI GCSGC 1 cut(s) 795
TfiI GAWTC 2 cut(s) 165, 878
Tru1I TTAA 4 cut(s) 288, 393, 401, 810
Tru9I TTAA 4 cut(s) 288, 393, 401, 810
TscAI CASTG 1 cut(s) 599
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 2 cut(s) 642, 773
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 3 cut(s) 214, 377, 543
TspGWI ACGGA 3 cut(s) 385, 539, 858
TspMI CCCGGG 1 cut(s) 354
TspRI CASTG 1 cut(s) 599
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 583
XapI RAATTY 3 cut(s) 172, 502, 658
XhoI CTCGAG 1 cut(s) 248
XmaI CCCGGG 1 cut(s) 354
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.