Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008911

Physical Location & Seq

Genomic Coordinates Reverse (-)

63586718 .. 63587404

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG468500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATGATGAGGATCTGCTTGCTCTAATCGTCAATAACATTAGCAACCCAGATGATAGAAGATCGTTTTCGGAGGTCTGCAAGCAATGGCTGAGAGTGGAAGGTCTAAACCGATCATCCCTTCGTCTTCTCCGATCCGAATATCTCCATCAGGTACTCCCTAGATTCCCAAATTTACTCACATTTGAAACTTCCAAGCCTATCACTCAAACCAACCTCAAGTTCATAGCTCAAACTTGTCGCGATCTCGAGGCCATCAACCTCAGTACCAAAGATCACCCTCCATTTAAGAAAAGTCCTGACTATTGGGTCGATGGTATGAGCGTTTTGGCAAAGGGGTGTCCCAAACTATCCCGGGTTATGCTTAGACGGAGATCGGTGAATGTTCATCTTACGTTTTTAAACTCAGCACACAATTTGACACATTTGGATTTGGGACATTGCTTGGTCTTGGACGAAGACCTCGAAGCAATTGGGTCTTGTAGTTCGATTAGCTACTTGAATTTGAAATGGGGTCTAATCACGGATGAAGGATTGGGTTTTCTGGCAAATGGTTCTTGCTCGAAAACCCTCAAGACATTGATCCTTGCTCAGTGTGACGAGATTACAGATGTTGGGGGTCTCGCTTTTGCACAAAATGAGCTGCTTGGAGTAGCTGAATTTGGCTTGGTTGTCAAAAGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

228

Amino Acids

25.48

Weight (kDa)

6.16

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	5 - 39	8.4e-06	F-box
DUF7885	PF25372	133 - 206	3e-06	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008911)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0307011
rosa_laevigata	RLG00000010742 RLG00000010743 RLG00000027492
rosa_multiflora	Rmu_sc0000294.1_g000037 Rmu_sc0005634.1_g000009 Rmu_sc0005634.1_g000010
rosa_roxburghii	Rroxscaffold_4G00292410 Rroxscaffold_7G00161230 Rroxscaffold_7G00161240
rosa_rugosa	Rorug06G0355200
rosa_samantha	Rh1BG285900 Rh1DG317400 Rh6BG433700 Rh6BG433800 Rh6BG434100 Rh6BG501300 Rh6CG481900 Rh6CG482200 Rh6CG482300 Rh6DG468200 Rh6DG468500
rosa_wichuraiana	Rw1G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AccII	CGCG	1 cut(s)	243
AclWI	GGATC	3 cut(s)	21, 129, 577
AcsI	RAATTY	3 cut(s)	172, 502, 659
AfaI	GTAC	2 cut(s)	156, 268
AgsI	TTSAA	3 cut(s)	188, 502, 508
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	4 cut(s)	230, 495, 643, 656
AluI	AGCT	4 cut(s)	230, 495, 643, 656
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	3 cut(s)	21, 129, 577
Ama87I	CYCGRG	2 cut(s)	248, 354
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	3 cut(s)	172, 502, 659
AsuC2I	CCSGG	2 cut(s)	355, 356
AsuHPI	GGTGA	2 cut(s)	269, 391
AvaI	CYCGRG	2 cut(s)	248, 354
BaeI	ACNNNNGTAYC	2 cut(s)	250, 283
BbsI	GAAGAC	2 cut(s)	119, 465
BbvI	GCAGC	1 cut(s)	630
BccI	CCATC	3 cut(s)	156, 263, 308
BcnI	CCSGG	2 cut(s)	355, 356
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
Bme1390I	CCNGG	2 cut(s)	355, 356
BmeT110I	CYCGRG	2 cut(s)	248, 354
BmrFI	CCNGG	2 cut(s)	355, 356
BpiI	GAAGAC	2 cut(s)	119, 465
BpuEI	CTTGAG	2 cut(s)	203, 557
BpuMI	CCSGG	2 cut(s)	355, 356
BsaBI	GATNNNNATC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	92, 439
Bse8I	GATNNNNATC	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	3 cut(s)	10, 116, 532
BseJI	GATNNNNATC	1 cut(s)	12
BseMI	GCAATG	2 cut(s)	92, 439
BseMII	CTCAG	4 cut(s)	83, 277, 420, 605
BseXI	GCAGC	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	254
BsiHKCI	CYCGRG	2 cut(s)	248, 354
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	2 cut(s)	327, 450
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	2 cut(s)	327, 450
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	626
BsoBI	CYCGRG	2 cut(s)	248, 354
Bsp143I	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
Bsp68I	TCGCGA	1 cut(s)	243
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	4 cut(s)	84, 276, 419, 604
BspFNI	CGCG	1 cut(s)	243
BspPI	GGATC	3 cut(s)	21, 129, 577
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	92, 439
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
BstC8I	GCNNGC	2 cut(s)	21, 83
BstDEI	CTNAG	5 cut(s)	92, 263, 365, 406, 591
BstF5I	GGATG	3 cut(s)	10, 116, 532
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	8 cut(s)	16, 65, 116, 137, 247, 277, 377, 585
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
BstSCI	CCNGG	2 cut(s)	353, 354
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	630
BstV2I	GAAGAC	2 cut(s)	119, 465
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	10, 116, 532
BtsIMutI	CAGTG	2 cut(s)	599, 682
BtuMI	TCGCGA	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	21, 83
Cfr9I	CCCGGG	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	155, 267
CviJI	RGCY	8 cut(s)	91, 199, 230, 254, 495, 643, 656, 666
CviKI_1	RGCY	8 cut(s)	91, 199, 230, 254, 495, 643, 656, 666
CviQI	GTAC	2 cut(s)	155, 267
DdeI	CTNAG	5 cut(s)	92, 263, 365, 406, 591
DpnI	GATC	8 cut(s)	15, 64, 115, 136, 246, 276, 376, 584
DpnII	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
DraI	TTTAAA	1 cut(s)	402
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	626
Eco88I	CYCGRG	2 cut(s)	248, 354
FaiI	YATR	3 cut(s)	227, 320, 362
FaqI	GGGAC	2 cut(s)	327, 450
Fnu4HI	GCNGC	1 cut(s)	644
FokI	GGATG	3 cut(s)	17, 103, 539
Fsp4HI	GCNGC	1 cut(s)	644
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	644
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	355
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	2 cut(s)	269, 391
Hpy188I	TCNGA	3 cut(s)	73, 134, 139
Hpy188III	TCNNGA	4 cut(s)	242, 248, 299, 574
HpyAV	CCTTC	3 cut(s)	95, 131, 524
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	81, 632
HpyF3I	CTNAG	5 cut(s)	92, 263, 365, 406, 591
HpySE526I	ACGT	1 cut(s)	395
Kzo9I	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
LpnPI	CCDG	5 cut(s)	63, 137, 312, 368, 530
Lsp1109I	GCAGC	1 cut(s)	630
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	596, 680
MalI	GATC	8 cut(s)	15, 64, 115, 136, 246, 276, 376, 584
MboI	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
MboII	GAAGA	3 cut(s)	72, 119, 470
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	5 cut(s)	172, 415, 471, 502, 659
MnlI	CCTC	8 cut(s)	4, 67, 227, 244, 272, 291, 473, 581
MseI	TTAA	2 cut(s)	288, 401
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	2 cut(s)	355, 356
MunI	CAATTG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	243
NciI	CCSGG	2 cut(s)	355, 356
NdeII	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
NmuCI	GTSAC	2 cut(s)	596, 680
NruI	TCGCGA	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	2 cut(s)	130, 462
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	13
RruI	TCGCGA	1 cut(s)	243
RsaI	GTAC	2 cut(s)	156, 268
RsaNI	GTAC	2 cut(s)	155, 267
SaqAI	TTAA	2 cut(s)	288, 401
SatI	GCNGC	1 cut(s)	644
Sau3AI	GATC	8 cut(s)	13, 62, 113, 134, 244, 274, 374, 582
ScrFI	CCNGG	2 cut(s)	355, 356
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmaI	CCCGGG	1 cut(s)	356
SmlI	CTYRAG	3 cut(s)	218, 248, 572
SmoI	CTYRAG	3 cut(s)	218, 248, 572
Sse9I	AATT	5 cut(s)	172, 415, 471, 502, 659
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	353, 354
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	5 cut(s)	249, 312, 465, 488, 563
TasI	AATT	5 cut(s)	172, 415, 471, 502, 659
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	288, 401
Tru9I	TTAA	2 cut(s)	288, 401
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	2 cut(s)	596, 680
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	2 cut(s)	596, 680
TspDTI	ATGAA	3 cut(s)	214, 377, 543
TspGWI	ACGGA	2 cut(s)	385, 539
TspMI	CCCGGG	1 cut(s)	354
TspRI	CASTG	1 cut(s)	599
XapI	RAATTY	3 cut(s)	172, 502, 659
XhoI	CTCGAG	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	354
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.